Wall clock time and date at job start Tue Mar 31 2020 16:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47493 * 2 1 4 4 N 1.46504 * 109.47077 * 179.97438 * 3 2 1 5 5 C 1.37092 * 119.99967 * 86.63308 * 4 3 2 6 6 H 1.08005 * 119.99542 * 219.01066 * 5 4 3 7 7 C 1.38943 * 120.00680 * 39.00756 * 5 4 3 8 8 N 1.31419 * 119.99762 * 20.23335 * 7 5 4 9 9 Si 1.86802 * 120.00587 * 200.23759 * 7 5 4 10 10 H 1.48496 * 109.47101 * 89.99467 * 9 7 5 11 11 H 1.48503 * 109.47229 * 209.99873 * 9 7 5 12 12 H 1.48505 * 109.46581 * 329.99985 * 9 7 5 13 13 C 1.34775 * 119.99882 * 266.62403 * 4 3 2 14 14 O 1.21293 * 120.00071 * 179.97438 * 13 4 3 15 15 C 1.50699 * 120.00164 * 0.02562 * 13 4 3 16 16 H 1.09008 * 109.47289 * 39.99402 * 15 13 4 17 17 C 1.53001 * 109.47107 * 279.99676 * 15 13 4 18 18 S 1.81396 * 109.47498 * 159.99565 * 15 13 4 19 19 O 1.42097 * 108.57866 * 296.30397 * 18 15 13 20 20 O 1.42100 * 108.57946 * 67.32778 * 18 15 13 21 21 C 1.81396 * 101.92245 * 181.81563 * 18 15 13 22 22 C 1.53183 * 109.54517 * 182.60054 * 21 18 15 23 23 C 1.53103 * 109.15947 * 183.24256 * 22 21 18 24 24 O 1.42898 * 109.48812 * 57.47543 * 23 22 21 25 25 C 1.42909 * 114.09752 * 298.88971 * 24 23 22 26 26 C 1.53091 * 109.41514 * 61.15933 * 25 24 23 27 27 H 1.08999 * 109.47383 * 300.01025 * 1 2 3 28 28 H 1.09008 * 109.46622 * 60.00391 * 1 2 3 29 29 H 1.08992 * 109.47568 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47383 * 239.98975 * 2 1 3 31 31 H 1.09008 * 109.46622 * 119.99609 * 2 1 3 32 32 H 1.08994 * 109.47279 * 59.99428 * 3 2 1 33 33 H 1.09000 * 109.47063 * 299.99727 * 3 2 1 34 34 H 0.97000 * 119.99990 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.46976 * 59.86753 * 17 15 13 36 36 H 1.08995 * 109.47732 * 179.86879 * 17 15 13 37 37 H 1.08998 * 109.46995 * 299.86853 * 17 15 13 38 38 H 1.08995 * 109.54841 * 302.77733 * 21 18 15 39 39 H 1.09007 * 109.52214 * 303.06448 * 22 21 18 40 40 H 1.09005 * 109.52044 * 63.24789 * 22 21 18 41 41 H 1.09001 * 109.40502 * 297.49231 * 23 22 21 42 42 H 1.09000 * 109.48882 * 177.51009 * 23 22 21 43 43 H 1.09000 * 109.47781 * 301.17678 * 25 24 23 44 44 H 1.09003 * 109.48745 * 181.14514 * 25 24 23 45 45 H 1.08996 * 109.52087 * 182.48571 * 26 25 24 46 46 H 1.08997 * 109.57783 * 62.32651 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4423 0.0006 5 6 4.1910 1.3724 -1.1843 6 1 5.0905 0.7784 -1.2533 7 6 3.7293 2.0655 -2.2965 8 7 2.9035 3.0764 -2.1444 9 14 4.2821 1.5604 -4.0078 10 1 3.3399 0.5512 -4.5546 11 1 4.3004 2.7519 -4.8939 12 1 5.6456 0.9764 -3.9352 13 6 4.1785 1.5112 1.1661 14 8 5.3914 1.5107 1.1666 15 6 3.4244 1.5877 2.4686 16 1 2.5611 0.9234 2.4283 17 6 2.9520 3.0243 2.7008 18 16 4.5134 1.0821 3.8284 19 8 4.8713 -0.2800 3.6392 20 8 5.5387 2.0552 3.9731 21 6 3.4037 1.1947 5.2589 22 6 4.1790 0.8592 6.5366 23 6 3.2171 0.8776 7.7276 24 8 2.1544 -0.0493 7.4964 25 6 1.3657 0.2435 6.3412 26 6 2.2527 0.1974 5.0943 27 1 -0.3634 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5140 -0.8899 31 1 1.8932 -0.5138 0.8901 32 1 1.6767 1.9563 0.8899 33 1 1.6768 1.9563 -0.8900 34 1 2.5808 3.5601 -2.9209 35 1 2.2995 3.3290 1.8825 36 1 2.4046 3.0793 3.6417 37 1 3.8154 3.6883 2.7434 38 1 3.0026 2.2057 5.3306 39 1 4.6229 -0.1321 6.4437 40 1 4.9653 1.5984 6.6903 41 1 2.8058 1.8801 7.8455 42 1 3.7543 0.5963 8.6333 43 1 0.9302 1.2377 6.4410 44 1 0.5691 -0.4947 6.2481 45 1 1.6625 0.4636 4.2175 46 1 2.6564 -0.8075 4.9703 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331097253.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:03 Heat of formation + Delta-G solvation = -155.579020 kcal Electronic energy + Delta-G solvation = -29053.544271 eV Core-core repulsion = 25070.806803 eV Total energy + Delta-G solvation = -3982.737468 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.49779 -38.99241 -36.66723 -35.70856 -35.44181 -34.34009 -33.23705 -32.49556 -31.44772 -31.14862 -26.12128 -25.73185 -25.24036 -24.21219 -23.58436 -21.03925 -20.98106 -19.67338 -18.32588 -17.50139 -16.94036 -16.49282 -16.36839 -15.97904 -15.70253 -15.39053 -15.03259 -14.92057 -14.37212 -14.24161 -14.12690 -13.92364 -13.83493 -13.32051 -13.03485 -12.72597 -12.41667 -12.36945 -12.04739 -11.78723 -11.74311 -11.71281 -11.60025 -11.57628 -11.49854 -11.33224 -11.27158 -11.13003 -11.05068 -10.74310 -10.52297 -10.43009 -10.38374 -10.19923 -10.02507 -9.60023 -9.08603 -8.74986 -7.60163 -6.45169 -4.12569 0.15508 2.99761 3.10241 3.20776 3.25822 3.56765 3.59591 3.76478 3.96092 4.06516 4.26302 4.50535 4.55596 4.66312 4.70005 4.86210 4.89971 5.03555 5.08032 5.11962 5.18080 5.25009 5.34756 5.35816 5.36039 5.49712 5.57835 5.60539 5.64030 5.67780 5.80185 5.82072 5.91063 6.02429 6.22215 6.32220 6.37944 6.48797 6.81529 6.87688 7.12523 7.48825 8.08060 8.31894 8.98718 9.20418 9.77182 10.57886 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.019235 B = 0.003957 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.307877 B = 7074.345664 C = 7867.555027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.142 4.142 3 C 0.092 3.908 4 N -0.419 5.419 5 C -0.310 4.310 6 H 0.095 0.905 7 C 0.042 3.958 8 N -0.865 5.865 9 Si 0.921 3.079 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.266 1.266 13 C 0.481 3.519 14 O -0.568 6.568 15 C -0.596 4.596 16 H 0.140 0.860 17 C -0.134 4.134 18 S 2.446 3.554 19 O -0.930 6.930 20 O -0.919 6.919 21 C -0.591 4.591 22 C -0.143 4.143 23 C 0.071 3.929 24 O -0.380 6.380 25 C 0.069 3.931 26 C -0.147 4.147 27 H 0.048 0.952 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.113 0.887 34 H 0.270 0.730 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.138 0.862 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.055 0.945 42 H 0.101 0.899 43 H 0.055 0.945 44 H 0.101 0.899 45 H 0.089 0.911 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.350 -2.142 14.364 17.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.181 4.181 3 C -0.032 4.032 4 N -0.136 5.136 5 C -0.439 4.439 6 H 0.113 0.887 7 C -0.164 4.164 8 N -0.502 5.502 9 Si 0.747 3.253 10 H -0.201 1.201 11 H -0.208 1.208 12 H -0.191 1.191 13 C 0.266 3.734 14 O -0.452 6.452 15 C -0.707 4.707 16 H 0.158 0.842 17 C -0.193 4.193 18 S 2.626 3.374 19 O -0.927 6.927 20 O -0.916 6.916 21 C -0.698 4.698 22 C -0.182 4.182 23 C -0.007 4.007 24 O -0.299 6.299 25 C -0.008 4.008 26 C -0.185 4.185 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.131 0.869 34 H 0.080 0.920 35 H 0.108 0.892 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.156 0.844 39 H 0.106 0.894 40 H 0.111 0.889 41 H 0.073 0.927 42 H 0.119 0.881 43 H 0.073 0.927 44 H 0.119 0.881 45 H 0.108 0.892 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.994 -2.395 14.299 16.556 hybrid contribution -0.817 0.407 -1.130 1.453 sum -8.811 -1.988 13.169 15.969 Atomic orbital electron populations 1.21688 0.96186 1.00912 1.01533 1.21963 0.94912 0.99020 1.02177 1.21858 0.81974 0.95146 1.04257 1.43321 1.04675 1.61550 1.04094 1.19536 1.10917 1.28225 0.85177 0.88720 1.25429 0.96887 0.93516 1.00531 1.69886 1.32708 1.16349 1.31264 0.86004 0.79672 0.78221 0.81372 1.20147 1.20849 1.19070 1.19007 0.87303 0.83312 0.83744 1.90678 1.13008 1.55281 1.86269 1.30506 1.16528 1.08359 1.15355 0.84165 1.21613 1.03328 0.91264 1.03045 1.07832 0.77036 0.75713 0.76851 1.93524 1.80549 1.34119 1.84465 1.93529 1.50929 1.62328 1.84766 1.30478 1.13298 1.08330 1.17699 1.22021 0.98801 1.04290 0.93040 1.22491 0.87921 0.93408 0.96896 1.87941 1.44337 1.52229 1.45383 1.22503 0.92747 1.01493 0.84076 1.22113 0.95999 0.99708 1.00726 0.93255 0.92624 0.93216 0.91160 0.93196 0.92597 0.86925 0.92009 0.89185 0.91590 0.90026 0.84383 0.89375 0.88884 0.92659 0.88120 0.92690 0.88119 0.89241 0.88665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 37.16 0.37 -1.57 16 2 C -0.14 -2.44 6.15 -26.73 -0.16 -2.61 16 3 C 0.09 1.85 4.60 -4.04 -0.02 1.83 16 4 N -0.42 -10.34 2.51 -114.81 -0.29 -10.63 16 5 C -0.31 -8.45 8.86 -14.94 -0.13 -8.59 16 6 H 0.10 2.72 7.79 -52.48 -0.41 2.31 16 7 C 0.04 1.07 5.01 -17.47 -0.09 0.98 16 8 N -0.86 -22.30 11.45 55.50 0.64 -21.66 16 9 Si 0.92 20.15 29.60 -169.99 -5.03 15.12 16 10 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 11 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 12 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 13 C 0.48 11.81 6.81 -10.99 -0.07 11.73 16 14 O -0.57 -16.47 15.61 -0.48 -0.01 -16.47 16 15 C -0.60 -10.54 1.92 -27.88 -0.05 -10.60 16 16 H 0.14 1.99 5.25 -51.92 -0.27 1.72 16 17 C -0.13 -1.98 8.65 37.16 0.32 -1.66 16 18 S 2.45 43.21 3.16 -107.50 -0.34 42.87 16 19 O -0.93 -19.36 17.73 -57.83 -1.03 -20.39 16 20 O -0.92 -19.34 17.43 -61.88 -1.08 -20.42 16 21 C -0.59 -6.72 2.30 -26.54 -0.06 -6.78 16 22 C -0.14 -1.53 5.44 -26.58 -0.14 -1.67 16 23 C 0.07 0.62 6.84 37.21 0.25 0.88 16 24 O -0.38 -4.00 10.77 -35.23 -0.38 -4.38 16 25 C 0.07 0.59 6.84 37.20 0.25 0.85 16 26 C -0.15 -1.46 5.16 -26.59 -0.14 -1.59 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.05 0.81 7.50 -51.92 -0.39 0.42 16 32 H 0.06 0.97 4.67 -51.93 -0.24 0.72 16 33 H 0.11 2.52 5.56 -51.93 -0.29 2.23 16 34 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 35 H 0.09 1.37 6.41 -51.93 -0.33 1.03 16 36 H 0.07 0.63 6.57 -51.93 -0.34 0.29 16 37 H 0.08 1.32 8.01 -51.93 -0.42 0.91 16 38 H 0.14 1.18 6.79 -51.93 -0.35 0.82 16 39 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.09 0.70 6.81 -51.93 -0.35 0.35 16 46 H 0.09 1.04 7.90 -51.93 -0.41 0.63 16 LS Contribution 371.07 15.07 5.59 5.59 Total: -1.00 -36.32 371.07 -8.77 -45.09 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -7.17 Total: 4.05 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: 0.33 Total: -18.78 kcal Atomic # 7 Polarization: -32.64 SS G_CDS: 0.35 Total: -32.30 kcal Atomic # 8 Polarization: -59.17 SS G_CDS: -2.49 Total: -61.66 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.03 Total: 15.12 kcal Atomic # 16 Polarization: 43.21 SS G_CDS: -0.34 Total: 42.87 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.32 -8.77 -45.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331097253.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.486 kcal (2) G-P(sol) polarization free energy of solvation -36.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds