Wall clock time and date at job start Tue Mar 31 2020 18:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46778 * 2 1 4 4 N 1.46494 * 109.47124 * 119.99908 * 2 1 3 5 5 C 1.34780 * 120.00332 * 275.00157 * 4 2 1 6 6 O 1.21596 * 119.99507 * 0.02562 * 5 4 2 7 7 N 1.34768 * 120.00292 * 180.02562 * 5 4 2 8 8 C 1.40201 * 120.00142 * 180.02562 * 7 5 4 9 9 C 1.40396 * 125.97176 * 359.97438 * 8 7 5 10 10 C 1.35243 * 107.86896 * 179.97438 * 9 8 7 11 11 N 1.34962 * 107.85356 * 0.22585 * 10 9 8 12 12 C 1.46501 * 125.97082 * 179.76577 * 11 10 9 13 13 C 1.50703 * 109.46706 * 125.00181 * 12 11 10 14 14 H 1.07992 * 120.00189 * 0.02562 * 13 12 11 15 15 C 1.37883 * 119.99721 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00333 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99825 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47276 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47061 * 120.00332 * 17 15 13 20 20 H 1.48495 * 109.47500 * 240.00143 * 17 15 13 21 21 N 1.31202 * 125.97171 * 179.97438 * 8 7 5 22 22 C 1.50702 * 109.47355 * 240.00294 * 2 1 3 23 23 C 1.38632 * 120.79654 * 264.71715 * 22 2 1 24 24 C 1.38191 * 119.18872 * 179.79994 * 23 22 2 25 25 N 1.31873 * 120.82447 * 0.48354 * 24 23 22 26 26 C 1.31843 * 121.74853 * 359.74721 * 25 24 23 27 27 C 1.38461 * 120.72448 * 0.02562 * 26 25 24 28 28 F 1.35103 * 120.44633 * 180.02562 * 27 26 25 29 29 H 1.09007 * 109.46819 * 60.00290 * 1 2 3 30 30 H 1.08998 * 109.46592 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47286 * 299.99833 * 1 2 3 32 32 H 0.96998 * 120.00015 * 95.00182 * 4 2 1 33 33 H 0.96998 * 120.00056 * 359.97438 * 7 5 4 34 34 H 1.08003 * 126.06768 * 359.93842 * 9 8 7 35 35 H 1.08002 * 126.06857 * 179.97438 * 10 9 8 36 36 H 1.09000 * 109.47836 * 245.00121 * 12 11 10 37 37 H 1.08997 * 109.47518 * 5.00660 * 12 11 10 38 38 H 0.96995 * 120.00331 * 179.97438 * 16 15 13 39 39 H 1.07995 * 120.40923 * 0.02750 * 23 22 2 40 40 H 1.08002 * 119.59189 * 180.25619 * 24 23 22 41 41 H 1.08000 * 119.63798 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1470 -0.0182 2.3572 6 8 1.8574 1.1614 2.4118 7 7 2.5967 -0.6534 3.4574 8 6 2.7301 0.0458 4.6653 9 6 2.4336 1.4028 4.8696 10 6 2.6940 1.6941 6.1644 11 7 3.1433 0.5690 6.7593 12 6 3.5470 0.4395 8.1616 13 6 2.7661 -0.6756 8.8081 14 1 2.0419 -1.2323 8.2320 15 6 2.9770 -0.9857 10.1350 16 7 3.8592 -0.3081 10.8365 17 14 2.0085 -2.3674 10.9365 18 1 1.0860 -2.9683 9.9399 19 1 2.9465 -3.4067 11.4318 20 1 1.2236 -1.8262 12.0750 21 7 3.1538 -0.4535 5.8021 22 6 2.0324 -0.7103 -1.2305 23 6 2.3724 -2.0536 -1.1855 24 6 2.8256 -2.6729 -2.3348 25 7 2.9455 -2.0001 -3.4626 26 6 2.6366 -0.7209 -3.5435 27 6 2.1715 -0.0339 -2.4349 28 9 1.8562 1.2767 -2.5243 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 2.2490 -1.6317 1.1526 33 1 2.8275 -1.5945 3.4139 34 1 2.0638 2.0921 4.1249 35 1 2.5690 2.6571 6.6371 36 1 4.6123 0.2148 8.2139 37 1 3.3467 1.3742 8.6853 38 1 4.0073 -0.5260 11.7700 39 1 2.2807 -2.6101 -0.2646 40 1 3.0883 -3.7201 -2.3082 41 1 2.7483 -0.2030 -4.4846 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338407756.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:11 Heat of formation + Delta-G solvation = 53.915454 kcal Electronic energy + Delta-G solvation = -26994.807972 eV Core-core repulsion = 22826.836112 eV Total energy + Delta-G solvation = -4167.971860 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.45386 -41.04658 -40.57263 -39.61582 -36.61690 -34.72015 -33.44684 -32.65449 -31.54360 -30.96803 -29.97579 -29.27871 -26.66168 -25.24911 -24.25337 -23.27836 -22.36927 -21.23703 -20.46913 -19.96699 -18.60442 -18.08442 -17.52827 -17.04674 -16.59898 -16.47312 -16.32626 -15.75414 -15.53077 -14.96981 -14.82752 -14.57293 -14.33971 -14.24609 -14.11640 -13.88894 -13.65840 -13.27023 -12.84724 -12.68687 -12.40300 -12.35557 -12.23630 -11.81603 -11.69334 -11.07379 -10.89881 -10.47065 -10.29077 -10.27065 -10.19633 -10.14151 -9.73923 -9.58483 -9.49920 -9.39947 -8.64959 -8.13300 -7.44850 -6.25494 -4.30435 0.35644 0.44094 2.20813 2.61158 3.03637 3.07080 3.21029 3.28619 3.34343 3.43541 3.52963 3.73598 3.81006 3.91653 4.12452 4.18342 4.27970 4.33355 4.76109 4.81513 4.91370 5.08785 5.09723 5.17928 5.26407 5.35011 5.45170 5.59986 5.78093 5.85235 6.02625 6.08458 6.21931 6.49180 6.52215 6.83598 6.95926 7.07378 7.24836 7.44992 7.67996 7.77707 7.92193 8.04710 8.48055 8.63751 8.79768 9.35193 10.83254 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.023897 B = 0.002053 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.432606 B =13638.352599 C =14206.471853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.204 3.796 3 H 0.110 0.890 4 N -0.742 5.742 5 C 0.716 3.284 6 O -0.562 6.562 7 N -0.641 5.641 8 C 0.274 3.726 9 C -0.286 4.286 10 C 0.051 3.949 11 N -0.320 5.320 12 C 0.258 3.742 13 C -0.527 4.527 14 H 0.069 0.931 15 C 0.061 3.939 16 N -0.895 5.895 17 Si 0.908 3.092 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.282 1.282 21 N -0.306 5.306 22 C -0.078 4.078 23 C -0.141 4.141 24 C 0.096 3.904 25 N -0.459 5.459 26 C 0.080 3.920 27 C 0.059 3.941 28 F -0.123 7.123 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.396 0.604 33 H 0.407 0.593 34 H 0.161 0.839 35 H 0.168 0.832 36 H 0.045 0.955 37 H 0.057 0.943 38 H 0.267 0.733 39 H 0.144 0.856 40 H 0.167 0.833 41 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.835 -2.116 -26.820 27.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.099 3.901 3 H 0.128 0.872 4 N -0.400 5.400 5 C 0.416 3.584 6 O -0.437 6.437 7 N -0.291 5.291 8 C 0.020 3.980 9 C -0.317 4.317 10 C -0.099 4.099 11 N -0.102 5.102 12 C 0.140 3.860 13 C -0.566 4.566 14 H 0.087 0.913 15 C -0.142 4.142 16 N -0.533 5.533 17 Si 0.735 3.265 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.208 1.208 21 N -0.138 5.138 22 C -0.087 4.087 23 C -0.161 4.161 24 C -0.061 4.061 25 N -0.167 5.167 26 C -0.079 4.079 27 C 0.037 3.963 28 F -0.101 7.101 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.232 0.768 33 H 0.241 0.759 34 H 0.178 0.822 35 H 0.185 0.815 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.162 0.838 40 H 0.184 0.816 41 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -3.260 -2.438 -26.594 26.904 hybrid contribution -0.829 -0.343 0.930 1.292 sum -4.090 -2.781 -25.665 26.137 Atomic orbital electron populations 1.22190 0.93091 1.02829 1.03686 1.19504 0.94668 0.96701 0.79225 0.87221 1.45121 1.72679 1.13703 1.08499 1.15533 0.78370 0.84913 0.79629 1.90886 1.55423 1.13789 1.83608 1.41325 1.68178 1.13316 1.06289 1.18760 1.02170 0.91445 0.85607 1.21505 1.17736 0.95522 0.96977 1.22562 1.00367 0.93317 0.93613 1.49061 1.46660 1.04313 1.10125 1.19748 0.97089 0.99471 0.69648 1.21296 1.22807 1.16946 0.95509 0.91258 1.24955 0.95386 0.96956 0.96871 1.69923 1.33664 1.40531 1.09225 0.86275 0.79728 0.81414 0.79092 1.19590 1.20709 1.20763 1.77318 1.27327 1.13225 0.95885 1.20559 0.98437 0.95003 0.94714 1.21888 0.99874 0.93593 1.00787 1.22880 0.95068 1.00683 0.87463 1.67761 1.13899 1.07262 1.27796 1.22971 0.96229 0.90820 0.97832 1.18568 1.02738 0.79691 0.95346 1.91559 1.90300 1.31625 1.96649 0.91266 0.92003 0.90365 0.76830 0.75873 0.82173 0.81495 0.93730 0.92510 0.92378 0.83819 0.81569 0.81265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 9.47 37.16 0.35 -0.96 16 2 C 0.20 1.80 2.62 -69.08 -0.18 1.62 16 3 H 0.11 1.19 7.31 -51.93 -0.38 0.81 16 4 N -0.74 -6.78 5.01 -59.81 -0.30 -7.08 16 5 C 0.72 9.90 8.50 -86.92 -0.74 9.17 16 6 O -0.56 -9.66 13.13 5.28 0.07 -9.59 16 7 N -0.64 -9.49 5.45 -15.51 -0.08 -9.58 16 8 C 0.27 5.40 8.11 -154.36 -1.25 4.15 16 9 C -0.29 -5.63 9.61 -39.84 -0.38 -6.01 16 10 C 0.05 1.02 11.44 -17.24 -0.20 0.82 16 11 N -0.32 -7.37 3.67 -62.56 -0.23 -7.60 16 12 C 0.26 6.51 6.26 -5.19 -0.03 6.48 16 13 C -0.53 -14.56 9.23 -34.44 -0.32 -14.88 16 14 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -25.19 13.29 55.43 0.74 -24.46 16 17 Si 0.91 21.20 29.54 -169.99 -5.02 16.18 16 18 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 N -0.31 -6.95 12.42 31.44 0.39 -6.56 16 22 C -0.08 -0.57 5.10 -104.25 -0.53 -1.10 16 23 C -0.14 -0.78 9.31 -39.45 -0.37 -1.15 16 24 C 0.10 0.55 11.18 -17.55 -0.20 0.36 16 25 N -0.46 -3.53 10.36 -13.20 -0.14 -3.67 16 26 C 0.08 0.56 11.17 -17.46 -0.20 0.37 16 27 C 0.06 0.46 7.29 -39.28 -0.29 0.17 16 28 F -0.12 -1.07 16.71 2.25 0.04 -1.03 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.40 2.40 6.30 -40.82 -0.26 2.14 16 33 H 0.41 4.73 8.84 -40.82 -0.36 4.37 16 34 H 0.16 3.09 5.91 -52.48 -0.31 2.78 16 35 H 0.17 2.71 8.06 -52.49 -0.42 2.28 16 36 H 0.04 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 38 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 39 H 0.14 0.44 6.18 -52.49 -0.32 0.12 16 40 H 0.17 0.51 8.06 -52.49 -0.42 0.09 16 41 H 0.17 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 361.10 15.07 5.44 5.44 Total: -1.00 -33.86 361.10 -8.07 -41.93 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -4.56 Total: 5.40 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -4.42 Total: 0.60 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: 0.38 Total: -58.94 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.07 Total: -9.59 kcal Atomic # 9 Polarization: -1.07 SS G_CDS: 0.04 Total: -1.03 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.86 -8.07 -41.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338407756.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.849 kcal (2) G-P(sol) polarization free energy of solvation -33.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds