Wall clock time and date at job start Tue Mar 31 2020 18:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46778 * 2 1 4 4 N 1.46494 * 109.47124 * 119.99908 * 2 1 3 5 5 C 1.34780 * 120.00332 * 275.00157 * 4 2 1 6 6 O 1.21596 * 119.99507 * 0.02562 * 5 4 2 7 7 N 1.34768 * 120.00292 * 180.02562 * 5 4 2 8 8 C 1.40201 * 120.00142 * 180.02562 * 7 5 4 9 9 C 1.40396 * 125.97176 * 359.97438 * 8 7 5 10 10 C 1.35243 * 107.86896 * 179.97438 * 9 8 7 11 11 N 1.34962 * 107.85356 * 0.22585 * 10 9 8 12 12 C 1.46501 * 125.97082 * 179.76577 * 11 10 9 13 13 C 1.50703 * 109.46706 * 125.00181 * 12 11 10 14 14 H 1.07992 * 120.00189 * 0.02562 * 13 12 11 15 15 C 1.37883 * 119.99721 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00333 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99825 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47276 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47061 * 120.00332 * 17 15 13 20 20 H 1.48495 * 109.47500 * 240.00143 * 17 15 13 21 21 N 1.31202 * 125.97171 * 179.97438 * 8 7 5 22 22 C 1.50702 * 109.47355 * 240.00294 * 2 1 3 23 23 C 1.38632 * 120.79654 * 264.71715 * 22 2 1 24 24 C 1.38191 * 119.18872 * 179.79994 * 23 22 2 25 25 N 1.31873 * 120.82447 * 0.48354 * 24 23 22 26 26 C 1.31843 * 121.74853 * 359.74721 * 25 24 23 27 27 C 1.38461 * 120.72448 * 0.02562 * 26 25 24 28 28 F 1.35103 * 120.44633 * 180.02562 * 27 26 25 29 29 H 1.09007 * 109.46819 * 60.00290 * 1 2 3 30 30 H 1.08998 * 109.46592 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47286 * 299.99833 * 1 2 3 32 32 H 0.96998 * 120.00015 * 95.00182 * 4 2 1 33 33 H 0.96998 * 120.00056 * 359.97438 * 7 5 4 34 34 H 1.08003 * 126.06768 * 359.93842 * 9 8 7 35 35 H 1.08002 * 126.06857 * 179.97438 * 10 9 8 36 36 H 1.09000 * 109.47836 * 245.00121 * 12 11 10 37 37 H 1.08997 * 109.47518 * 5.00660 * 12 11 10 38 38 H 0.96995 * 120.00331 * 179.97438 * 16 15 13 39 39 H 1.07995 * 120.40923 * 0.02750 * 23 22 2 40 40 H 1.08002 * 119.59189 * 180.25619 * 24 23 22 41 41 H 1.08000 * 119.63798 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1470 -0.0182 2.3572 6 8 1.8574 1.1614 2.4118 7 7 2.5967 -0.6534 3.4574 8 6 2.7301 0.0458 4.6653 9 6 2.4336 1.4028 4.8696 10 6 2.6940 1.6941 6.1644 11 7 3.1433 0.5690 6.7593 12 6 3.5470 0.4395 8.1616 13 6 2.7661 -0.6756 8.8081 14 1 2.0419 -1.2323 8.2320 15 6 2.9770 -0.9857 10.1350 16 7 3.8592 -0.3081 10.8365 17 14 2.0085 -2.3674 10.9365 18 1 1.0860 -2.9683 9.9399 19 1 2.9465 -3.4067 11.4318 20 1 1.2236 -1.8262 12.0750 21 7 3.1538 -0.4535 5.8021 22 6 2.0324 -0.7103 -1.2305 23 6 2.3724 -2.0536 -1.1855 24 6 2.8256 -2.6729 -2.3348 25 7 2.9455 -2.0001 -3.4626 26 6 2.6366 -0.7209 -3.5435 27 6 2.1715 -0.0339 -2.4349 28 9 1.8562 1.2767 -2.5243 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 2.2490 -1.6317 1.1526 33 1 2.8275 -1.5945 3.4139 34 1 2.0638 2.0921 4.1249 35 1 2.5690 2.6571 6.6371 36 1 4.6123 0.2148 8.2139 37 1 3.3467 1.3742 8.6853 38 1 4.0073 -0.5260 11.7700 39 1 2.2807 -2.6101 -0.2646 40 1 3.0883 -3.7201 -2.3082 41 1 2.7483 -0.2030 -4.4846 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338407756.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:10 Heat of formation + Delta-G solvation = 31.591407 kcal Electronic energy + Delta-G solvation = -26995.776015 eV Core-core repulsion = 22826.836112 eV Total energy + Delta-G solvation = -4168.939903 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.06054 -42.27378 -41.48485 -40.71333 -37.49224 -36.13757 -35.29556 -33.62115 -32.52647 -32.01059 -31.00992 -30.68327 -28.50961 -25.95236 -25.15931 -24.62516 -23.48427 -22.31693 -21.76391 -21.35891 -19.65405 -18.77321 -18.65390 -18.25488 -18.10399 -17.50353 -16.98147 -16.93090 -16.73503 -16.36127 -15.83950 -15.74701 -15.58755 -15.17684 -14.95750 -14.70229 -14.49515 -14.31555 -14.28592 -14.01140 -13.79866 -13.63033 -13.19933 -13.08107 -12.92648 -12.72564 -12.39601 -12.29718 -12.05340 -11.65134 -11.38757 -11.16278 -10.87155 -10.71878 -10.70909 -10.36241 -10.01689 -9.72899 -9.06490 -8.32094 -6.46096 -0.14412 -0.07709 1.03083 1.09723 1.38077 1.39466 1.52443 1.68354 2.05408 2.36233 2.38207 2.56601 2.93316 2.99496 3.05417 3.14675 3.49439 3.66244 3.76607 3.96558 4.10749 4.14697 4.28943 4.41693 4.52658 4.68925 4.71626 4.75359 4.78661 4.86733 4.92836 4.96034 5.03743 5.11999 5.18557 5.37872 5.54973 5.57834 5.74177 5.85894 5.96839 6.29761 6.63438 6.71942 6.77055 7.13118 7.23859 7.36503 8.75594 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.023897 B = 0.002053 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.432606 B =13638.352599 C =14206.471853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.207 3.793 3 H 0.087 0.913 4 N -0.717 5.717 5 C 0.716 3.284 6 O -0.596 6.596 7 N -0.633 5.633 8 C 0.285 3.715 9 C -0.293 4.293 10 C 0.056 3.944 11 N -0.345 5.345 12 C 0.272 3.728 13 C -0.545 4.545 14 H 0.053 0.947 15 C 0.017 3.983 16 N -0.921 5.921 17 Si 0.973 3.027 18 H -0.274 1.274 19 H -0.273 1.273 20 H -0.271 1.271 21 N -0.345 5.345 22 C -0.084 4.084 23 C -0.135 4.135 24 C 0.097 3.903 25 N -0.479 5.479 26 C 0.077 3.923 27 C 0.043 3.957 28 F -0.133 7.133 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.414 0.586 33 H 0.422 0.578 34 H 0.167 0.833 35 H 0.200 0.800 36 H 0.022 0.978 37 H 0.058 0.942 38 H 0.272 0.728 39 H 0.171 0.829 40 H 0.196 0.804 41 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.477 -3.742 -27.827 28.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.102 3.898 3 H 0.105 0.895 4 N -0.376 5.376 5 C 0.416 3.584 6 O -0.473 6.473 7 N -0.285 5.285 8 C 0.029 3.971 9 C -0.324 4.324 10 C -0.093 4.093 11 N -0.127 5.127 12 C 0.153 3.847 13 C -0.583 4.583 14 H 0.071 0.929 15 C -0.184 4.184 16 N -0.560 5.560 17 Si 0.797 3.203 18 H -0.198 1.198 19 H -0.199 1.199 20 H -0.196 1.196 21 N -0.176 5.176 22 C -0.093 4.093 23 C -0.155 4.155 24 C -0.059 4.059 25 N -0.188 5.188 26 C -0.081 4.081 27 C 0.021 3.979 28 F -0.112 7.112 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.254 0.746 33 H 0.260 0.740 34 H 0.184 0.816 35 H 0.217 0.783 36 H 0.039 0.961 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.189 0.811 40 H 0.213 0.787 41 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -3.900 -4.099 -27.661 28.234 hybrid contribution -0.626 0.168 1.075 1.255 sum -4.526 -3.931 -26.586 27.254 Atomic orbital electron populations 1.22133 0.92509 1.03665 1.02984 1.19434 0.95079 0.95805 0.79456 0.89535 1.44902 1.71289 1.14404 1.07042 1.15662 0.77949 0.84598 0.80216 1.90861 1.56756 1.15485 1.84211 1.41293 1.68171 1.13970 1.05059 1.19045 0.99997 0.91796 0.86264 1.21682 1.17871 0.95794 0.97028 1.23150 0.98713 0.93695 0.93717 1.48815 1.48738 1.05486 1.09652 1.19339 0.95440 0.98767 0.71122 1.21427 1.23039 1.17806 0.96032 0.92884 1.25757 0.96205 0.99162 0.97237 1.70000 1.34564 1.41724 1.09713 0.85285 0.78398 0.78532 0.78098 1.19817 1.19867 1.19631 1.77237 1.29521 1.14070 0.96809 1.20466 0.99326 0.95812 0.93732 1.22160 0.98678 0.92725 1.01912 1.23405 0.93848 1.01852 0.86839 1.67816 1.14545 1.07517 1.28904 1.23217 0.95746 0.90846 0.98263 1.18731 1.03718 0.79436 0.95968 1.91530 1.90547 1.32400 1.96740 0.90542 0.90350 0.92492 0.74640 0.74025 0.81596 0.78335 0.96051 0.92414 0.91872 0.81140 0.78731 0.79741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.47 71.98 0.68 -1.68 16 2 C 0.21 3.41 2.62 44.25 0.12 3.53 16 3 H 0.09 1.88 7.31 -2.38 -0.02 1.87 16 4 N -0.72 -11.77 5.01 -461.41 -2.31 -14.08 16 5 C 0.72 18.98 8.50 179.06 1.52 20.50 16 6 O -0.60 -20.25 13.13 -4.02 -0.05 -20.30 16 7 N -0.63 -17.99 5.45 -321.24 -1.75 -19.74 16 8 C 0.28 11.10 8.11 133.31 1.08 12.19 16 9 C -0.29 -11.39 9.61 22.10 0.21 -11.18 16 10 C 0.06 2.19 11.44 83.52 0.96 3.15 16 11 N -0.34 -16.09 3.67 -351.84 -1.29 -17.38 16 12 C 0.27 14.05 6.26 85.63 0.54 14.59 16 13 C -0.54 -30.52 9.23 25.60 0.24 -30.29 16 14 H 0.05 3.09 7.81 -2.91 -0.02 3.06 16 15 C 0.02 0.91 5.46 84.66 0.46 1.37 16 16 N -0.92 -51.96 13.29 21.45 0.28 -51.68 16 17 Si 0.97 43.24 29.54 68.60 2.03 45.26 16 18 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 19 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 20 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 21 N -0.35 -15.77 12.42 -54.44 -0.68 -16.45 16 22 C -0.08 -1.09 5.10 -19.63 -0.10 -1.19 16 23 C -0.14 -1.09 9.31 22.35 0.21 -0.88 16 24 C 0.10 0.84 11.18 84.68 0.95 1.79 16 25 N -0.48 -6.42 10.36 -195.66 -2.03 -8.45 16 26 C 0.08 0.99 11.17 84.74 0.95 1.93 16 27 C 0.04 0.64 7.29 22.47 0.16 0.80 16 28 F -0.13 -2.31 16.71 44.97 0.75 -1.56 16 29 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.41 3.74 6.30 -92.71 -0.58 3.16 16 33 H 0.42 9.09 8.84 -92.71 -0.82 8.27 16 34 H 0.17 6.32 5.91 -2.91 -0.02 6.30 16 35 H 0.20 6.21 8.06 -2.91 -0.02 6.19 16 36 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.06 2.92 8.07 -2.39 -0.02 2.90 16 38 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 39 H 0.17 0.34 6.18 -2.91 -0.02 0.32 16 40 H 0.20 0.45 8.06 -2.91 -0.02 0.43 16 41 H 0.19 1.56 8.06 -2.91 -0.02 1.53 16 Total: -1.00 -73.86 361.10 2.63 -71.23 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -0.30 Total: 18.52 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: 7.97 Total: 14.63 kcal Atomic # 7 Polarization: -120.00 SS G_CDS: -7.77 Total: -127.77 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.05 Total: -20.30 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.75 Total: -1.56 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -73.86 2.63 -71.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338407756.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.823 kcal (2) G-P(sol) polarization free energy of solvation -73.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds