Wall clock time and date at job start Tue Mar 31 2020 16:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47214 * 2 1 4 4 N 1.46499 * 109.47246 * 179.97438 * 3 2 1 5 5 C 1.46497 * 119.99877 * 275.00242 * 4 3 2 6 6 C 1.50699 * 109.47183 * 274.99975 * 5 4 3 7 7 O 1.20833 * 120.00048 * 0.02562 * 6 5 4 8 8 O 1.34232 * 120.00289 * 180.02562 * 6 5 4 9 9 C 1.45199 * 116.99913 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.46666 * 180.02562 * 9 8 6 11 11 S 1.65598 * 120.00027 * 94.99980 * 4 3 2 12 12 O 1.42104 * 104.27721 * 153.92650 * 11 4 3 13 13 O 1.42102 * 104.27547 * 26.07253 * 11 4 3 14 14 C 1.81402 * 104.44974 * 270.00197 * 11 4 3 15 15 C 1.52995 * 109.46903 * 186.41922 * 14 11 4 16 16 C 1.50707 * 115.55105 * 299.69720 * 15 14 11 17 17 H 1.08001 * 119.99825 * 95.16860 * 16 15 14 18 18 C 1.37876 * 119.99836 * 275.16710 * 16 15 14 19 19 N 1.31514 * 120.00123 * 7.15121 * 18 16 15 20 20 Si 1.86799 * 119.99750 * 187.14853 * 18 16 15 21 21 H 1.48500 * 109.47152 * 269.99777 * 20 18 16 22 22 H 1.48501 * 109.47211 * 30.00270 * 20 18 16 23 23 H 1.48507 * 109.46852 * 150.00431 * 20 18 16 24 24 C 1.52997 * 117.50210 * 85.36976 * 15 14 11 25 25 C 1.53003 * 117.49929 * 154.02871 * 15 14 11 26 26 H 1.09001 * 109.46933 * 59.99770 * 1 2 3 27 27 H 1.08998 * 109.47036 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47118 * 299.99909 * 1 2 3 29 29 H 1.09001 * 109.47118 * 240.00091 * 2 1 3 30 30 H 1.09001 * 109.46933 * 120.00230 * 2 1 3 31 31 H 1.09001 * 109.47003 * 60.00021 * 3 2 1 32 32 H 1.09003 * 109.47056 * 300.00414 * 3 2 1 33 33 H 1.08999 * 109.47474 * 34.99809 * 5 4 3 34 34 H 1.08999 * 109.47181 * 155.00176 * 5 4 3 35 35 H 1.08999 * 109.47123 * 299.99502 * 9 8 6 36 36 H 1.08991 * 109.47200 * 60.00350 * 9 8 6 37 37 H 1.09007 * 109.46909 * 299.99696 * 10 9 8 38 38 H 1.08995 * 109.47622 * 59.99674 * 10 9 8 39 39 H 1.09007 * 109.47134 * 180.02562 * 10 9 8 40 40 H 1.09000 * 109.47232 * 66.41723 * 14 11 4 41 41 H 1.09001 * 109.46714 * 306.41572 * 14 11 4 42 42 H 0.97001 * 119.99950 * 355.44107 * 19 18 16 43 43 H 1.09005 * 117.50147 * 215.00625 * 24 15 14 44 44 H 1.09004 * 117.49963 * 0.02562 * 24 15 14 45 45 H 1.08995 * 117.49833 * 359.97438 * 25 15 14 46 46 H 1.09001 * 117.49854 * 144.97400 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2370 1.3321 1.2648 6 6 4.3806 2.6988 1.8832 7 8 3.9185 3.6660 1.3253 8 8 5.0219 2.8420 3.0537 9 6 5.1228 4.1876 3.5898 10 6 5.8812 4.1517 4.9181 11 16 4.3336 1.5673 -1.4277 12 8 5.5800 2.1429 -1.0607 13 8 3.4379 2.2505 -2.2939 14 6 4.5602 -0.1486 -1.9710 15 6 5.4580 -0.1770 -3.2095 16 6 4.9378 0.5758 -4.4069 17 1 5.2529 1.5937 -4.5835 18 6 4.0597 -0.0348 -5.2769 19 7 3.5665 -1.2197 -4.9897 20 14 3.5703 0.8209 -6.8637 21 1 2.3651 1.6549 -6.6250 22 1 4.6868 1.6846 -7.3249 23 1 3.2700 -0.1969 -7.9026 24 6 6.9714 -0.1881 -2.9849 25 6 6.2602 -1.4533 -3.4713 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.6893 0.6809 1.9461 34 1 5.2253 0.9126 1.0770 35 1 5.6587 4.8210 2.8829 36 1 4.1230 4.5898 3.7526 37 1 5.3456 3.5181 5.6252 38 1 6.8810 3.7496 4.7550 39 1 5.9566 5.1618 5.3209 40 1 3.5909 -0.5835 -2.2148 41 1 5.0259 -0.7244 -1.1712 42 1 3.8705 -1.6929 -4.1994 43 1 7.5908 0.3492 -3.7031 44 1 7.3274 -0.1756 -1.9547 45 1 6.1487 -2.2725 -2.7610 46 1 6.4114 -1.7486 -4.5096 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346440421.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:34 Heat of formation + Delta-G solvation = -144.330111 kcal Electronic energy + Delta-G solvation = -28566.368639 eV Core-core repulsion = 24584.118961 eV Total energy + Delta-G solvation = -3982.249679 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.46245 -37.35413 -37.10507 -36.52614 -36.08053 -35.14302 -33.00707 -32.00173 -31.89661 -28.47026 -28.35453 -25.37662 -24.93645 -23.34603 -21.65480 -21.43639 -21.16440 -19.75368 -18.48739 -17.85847 -17.42384 -16.89412 -16.74697 -16.37319 -15.85161 -15.31729 -14.68117 -14.50739 -14.33885 -14.04761 -13.73772 -13.72602 -13.32625 -13.24559 -12.97748 -12.72046 -12.61686 -12.30205 -12.02038 -11.94513 -11.88667 -11.74922 -11.50114 -11.33319 -11.29329 -11.18872 -11.00074 -10.77664 -10.66341 -10.64697 -10.62090 -10.54313 -10.36949 -10.10222 -9.73570 -9.10225 -8.68809 -8.49607 -8.34400 -6.47743 -4.26572 0.83266 2.22426 2.53878 3.16593 3.46339 3.49202 3.64312 4.47169 4.50572 4.56543 4.63236 4.71535 4.73820 4.81832 4.92614 4.99933 5.05769 5.08061 5.13925 5.16566 5.25169 5.35522 5.46448 5.48337 5.55785 5.70378 5.73141 5.74009 5.82648 5.90142 6.02007 6.07437 6.12934 6.21744 6.30595 6.35545 6.37712 6.50641 6.59997 6.73038 6.98802 7.14686 7.76808 8.00861 8.32450 8.75285 9.52437 10.92273 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014650 B = 0.004084 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.788034 B = 6855.034257 C = 7585.578203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.150 4.150 3 C 0.115 3.885 4 N -0.994 5.994 5 C 0.137 3.863 6 C 0.444 3.556 7 O -0.492 6.492 8 O -0.362 6.362 9 C 0.060 3.940 10 C -0.151 4.151 11 S 2.612 3.388 12 O -0.965 6.965 13 O -0.933 6.933 14 C -0.566 4.566 15 C 0.021 3.979 16 C -0.594 4.594 17 H 0.062 0.938 18 C 0.042 3.958 19 N -0.896 5.896 20 Si 1.065 2.935 21 H -0.281 1.281 22 H -0.285 1.285 23 H -0.283 1.283 24 C -0.191 4.191 25 C -0.163 4.163 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.128 0.872 41 H 0.100 0.900 42 H 0.275 0.725 43 H 0.089 0.911 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.883 1.827 18.178 18.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.189 4.189 3 C -0.010 4.010 4 N -0.827 5.827 5 C 0.008 3.992 6 C 0.283 3.717 7 O -0.377 6.377 8 O -0.279 6.279 9 C -0.014 4.014 10 C -0.208 4.208 11 S 2.709 3.291 12 O -0.956 6.956 13 O -0.923 6.923 14 C -0.699 4.699 15 C 0.018 3.982 16 C -0.631 4.631 17 H 0.080 0.920 18 C -0.166 4.166 19 N -0.530 5.530 20 Si 0.892 3.108 21 H -0.207 1.207 22 H -0.211 1.211 23 H -0.209 1.209 24 C -0.228 4.228 25 C -0.202 4.202 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.119 0.881 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.146 0.854 41 H 0.119 0.881 42 H 0.086 0.914 43 H 0.108 0.892 44 H 0.094 0.906 45 H 0.089 0.911 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.759 2.865 16.326 16.669 hybrid contribution 0.884 -0.448 1.604 1.885 sum -0.875 2.416 17.930 18.113 Atomic orbital electron populations 1.21682 0.94943 1.01998 1.02104 1.22063 0.96691 0.97295 1.02885 1.21479 0.77935 0.96825 1.04794 1.57940 1.15376 1.89358 1.20043 1.20592 1.00072 0.90997 0.87502 1.24508 0.74838 0.93426 0.78887 1.90680 1.44766 1.41106 1.61191 1.86477 1.70551 1.33820 1.37035 1.23012 1.01343 0.81280 0.95757 1.21801 1.01059 1.02896 0.95074 1.05236 0.73633 0.78264 0.71996 1.93499 1.44369 1.75708 1.82012 1.93536 1.64309 1.70728 1.63727 1.30204 1.10143 1.22189 1.07321 1.18560 0.87477 0.99786 0.92339 1.21413 1.32215 1.00860 1.08565 0.92011 1.25802 0.92479 0.96301 1.02000 1.70745 1.39115 1.13912 1.29189 0.83611 0.76747 0.75419 0.75017 1.20735 1.21079 1.20880 1.23054 0.96775 1.02705 1.00256 1.22795 1.05834 0.90670 1.00910 0.92047 0.92371 0.92792 0.91120 0.91588 0.90564 0.88126 0.86233 0.86028 0.91096 0.91356 0.91570 0.91365 0.90350 0.85427 0.88098 0.91405 0.89230 0.90644 0.91142 0.89230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.91 37.16 0.37 -1.22 16 2 C -0.15 -1.81 6.26 -26.73 -0.17 -1.98 16 3 C 0.11 1.63 5.64 -4.04 -0.02 1.61 16 4 N -0.99 -15.82 2.21 -115.66 -0.26 -16.07 16 5 C 0.14 1.73 5.85 -5.20 -0.03 1.70 16 6 C 0.44 6.61 8.02 36.01 0.29 6.90 16 7 O -0.49 -9.09 16.17 -18.76 -0.30 -9.39 16 8 O -0.36 -4.57 10.22 -39.26 -0.40 -4.98 16 9 C 0.06 0.63 6.19 37.16 0.23 0.86 16 10 C -0.15 -1.09 10.29 37.16 0.38 -0.71 16 11 S 2.61 55.14 5.01 -107.50 -0.54 54.60 16 12 O -0.97 -22.04 16.99 -57.54 -0.98 -23.01 16 13 O -0.93 -23.35 16.04 -57.54 -0.92 -24.27 16 14 C -0.57 -11.55 5.98 37.16 0.22 -11.32 16 15 C 0.02 0.50 0.95 -155.66 -0.15 0.35 16 16 C -0.59 -16.45 7.90 -34.44 -0.27 -16.72 16 17 H 0.06 1.78 7.82 -52.49 -0.41 1.37 16 18 C 0.04 1.16 5.39 -17.82 -0.10 1.06 16 19 N -0.90 -25.41 13.57 55.43 0.75 -24.66 16 20 Si 1.06 25.42 29.91 -169.99 -5.08 20.34 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 24 C -0.19 -4.11 9.95 -26.70 -0.27 -4.37 16 25 C -0.16 -3.57 8.75 -26.69 -0.23 -3.80 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.97 7.22 -51.93 -0.37 0.59 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.94 8.11 -51.93 -0.42 0.52 16 32 H 0.10 1.65 6.82 -51.93 -0.35 1.29 16 33 H 0.12 0.98 8.11 -51.93 -0.42 0.56 16 34 H 0.12 1.37 7.61 -51.93 -0.40 0.98 16 35 H 0.07 0.81 8.13 -51.93 -0.42 0.38 16 36 H 0.07 0.69 8.13 -51.93 -0.42 0.26 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.13 2.65 6.86 -51.92 -0.36 2.29 16 41 H 0.10 1.64 8.11 -51.92 -0.42 1.22 16 42 H 0.27 7.55 6.17 -40.82 -0.25 7.30 16 43 H 0.09 1.94 8.14 -51.93 -0.42 1.52 16 44 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 45 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 46 H 0.09 2.08 8.14 -51.93 -0.42 1.66 16 LS Contribution 395.15 15.07 5.95 5.95 Total: -1.00 -35.74 395.15 -9.22 -44.95 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -7.70 Total: 4.17 kcal Atomic # 6 Polarization: -27.90 SS G_CDS: 0.26 Total: -27.64 kcal Atomic # 7 Polarization: -41.23 SS G_CDS: 0.50 Total: -40.73 kcal Atomic # 8 Polarization: -59.04 SS G_CDS: -2.60 Total: -61.65 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -5.08 Total: 20.34 kcal Atomic # 16 Polarization: 55.14 SS G_CDS: -0.54 Total: 54.60 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.74 -9.22 -44.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346440421.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.377 kcal (2) G-P(sol) polarization free energy of solvation -35.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds