Wall clock time and date at job start Tue Mar 31 2020 16:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47214 * 2 1 4 4 N 1.46499 * 109.47246 * 179.97438 * 3 2 1 5 5 C 1.46497 * 119.99877 * 275.00242 * 4 3 2 6 6 C 1.50699 * 109.47183 * 274.99975 * 5 4 3 7 7 O 1.20833 * 120.00048 * 0.02562 * 6 5 4 8 8 O 1.34232 * 120.00289 * 180.02562 * 6 5 4 9 9 C 1.45199 * 116.99913 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.46666 * 180.02562 * 9 8 6 11 11 S 1.65598 * 120.00027 * 94.99980 * 4 3 2 12 12 O 1.42104 * 104.27721 * 153.92650 * 11 4 3 13 13 O 1.42102 * 104.27547 * 26.07253 * 11 4 3 14 14 C 1.81402 * 104.44974 * 270.00197 * 11 4 3 15 15 C 1.52995 * 109.46903 * 186.41922 * 14 11 4 16 16 C 1.50707 * 115.55105 * 299.69720 * 15 14 11 17 17 H 1.08001 * 119.99825 * 95.16860 * 16 15 14 18 18 C 1.37876 * 119.99836 * 275.16710 * 16 15 14 19 19 N 1.31514 * 120.00123 * 7.15121 * 18 16 15 20 20 Si 1.86799 * 119.99750 * 187.14853 * 18 16 15 21 21 H 1.48500 * 109.47152 * 269.99777 * 20 18 16 22 22 H 1.48501 * 109.47211 * 30.00270 * 20 18 16 23 23 H 1.48507 * 109.46852 * 150.00431 * 20 18 16 24 24 C 1.52997 * 117.50210 * 85.36976 * 15 14 11 25 25 C 1.53003 * 117.49929 * 154.02871 * 15 14 11 26 26 H 1.09001 * 109.46933 * 59.99770 * 1 2 3 27 27 H 1.08998 * 109.47036 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47118 * 299.99909 * 1 2 3 29 29 H 1.09001 * 109.47118 * 240.00091 * 2 1 3 30 30 H 1.09001 * 109.46933 * 120.00230 * 2 1 3 31 31 H 1.09001 * 109.47003 * 60.00021 * 3 2 1 32 32 H 1.09003 * 109.47056 * 300.00414 * 3 2 1 33 33 H 1.08999 * 109.47474 * 34.99809 * 5 4 3 34 34 H 1.08999 * 109.47181 * 155.00176 * 5 4 3 35 35 H 1.08999 * 109.47123 * 299.99502 * 9 8 6 36 36 H 1.08991 * 109.47200 * 60.00350 * 9 8 6 37 37 H 1.09007 * 109.46909 * 299.99696 * 10 9 8 38 38 H 1.08995 * 109.47622 * 59.99674 * 10 9 8 39 39 H 1.09007 * 109.47134 * 180.02562 * 10 9 8 40 40 H 1.09000 * 109.47232 * 66.41723 * 14 11 4 41 41 H 1.09001 * 109.46714 * 306.41572 * 14 11 4 42 42 H 0.97001 * 119.99950 * 355.44107 * 19 18 16 43 43 H 1.09005 * 117.50147 * 215.00625 * 24 15 14 44 44 H 1.09004 * 117.49963 * 0.02562 * 24 15 14 45 45 H 1.08995 * 117.49833 * 359.97438 * 25 15 14 46 46 H 1.09001 * 117.49854 * 144.97400 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2370 1.3321 1.2648 6 6 4.3806 2.6988 1.8832 7 8 3.9185 3.6660 1.3253 8 8 5.0219 2.8420 3.0537 9 6 5.1228 4.1876 3.5898 10 6 5.8812 4.1517 4.9181 11 16 4.3336 1.5673 -1.4277 12 8 5.5800 2.1429 -1.0607 13 8 3.4379 2.2505 -2.2939 14 6 4.5602 -0.1486 -1.9710 15 6 5.4580 -0.1770 -3.2095 16 6 4.9378 0.5758 -4.4069 17 1 5.2529 1.5937 -4.5835 18 6 4.0597 -0.0348 -5.2769 19 7 3.5665 -1.2197 -4.9897 20 14 3.5703 0.8209 -6.8637 21 1 2.3651 1.6549 -6.6250 22 1 4.6868 1.6846 -7.3249 23 1 3.2700 -0.1969 -7.9026 24 6 6.9714 -0.1881 -2.9849 25 6 6.2602 -1.4533 -3.4713 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.6893 0.6809 1.9461 34 1 5.2253 0.9126 1.0770 35 1 5.6587 4.8210 2.8829 36 1 4.1230 4.5898 3.7526 37 1 5.3456 3.5181 5.6252 38 1 6.8810 3.7496 4.7550 39 1 5.9566 5.1618 5.3209 40 1 3.5909 -0.5835 -2.2148 41 1 5.0259 -0.7244 -1.1712 42 1 3.8705 -1.6929 -4.1994 43 1 7.5908 0.3492 -3.7031 44 1 7.3274 -0.1756 -1.9547 45 1 6.1487 -2.2725 -2.7610 46 1 6.4114 -1.7486 -4.5096 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346440421.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:33 Heat of formation + Delta-G solvation = -167.754904 kcal Electronic energy + Delta-G solvation = -28567.384415 eV Core-core repulsion = 24584.118961 eV Total energy + Delta-G solvation = -3983.265454 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.56682 -38.91282 -38.43710 -38.19516 -37.28621 -36.88587 -34.06303 -34.00968 -32.65903 -30.04483 -29.44980 -27.11021 -26.34954 -24.15807 -23.15612 -22.66212 -22.31687 -21.54387 -19.95331 -19.01648 -18.88426 -18.73361 -17.88934 -17.48627 -17.25112 -16.81867 -16.05343 -15.74297 -15.69409 -15.66040 -15.24696 -15.00485 -14.73246 -14.57871 -14.26176 -13.82219 -13.70151 -13.61252 -13.43977 -13.14658 -13.09054 -13.01038 -12.89576 -12.71404 -12.66923 -12.58939 -12.51132 -12.34877 -12.27258 -12.09450 -11.96282 -11.77782 -11.61573 -11.55168 -11.43915 -10.60698 -10.54324 -10.42498 -10.05277 -8.63426 -6.41192 -0.75896 1.11195 1.49070 1.50091 1.56530 1.74467 1.84982 2.51401 2.90061 3.08960 3.15023 3.23797 3.44450 3.70255 3.84799 3.97246 3.99969 4.04230 4.07874 4.10416 4.24311 4.32784 4.34511 4.35967 4.37482 4.45623 4.60763 4.72577 4.78167 4.82662 4.85765 4.92492 4.96225 5.00527 5.13050 5.17955 5.20187 5.32093 5.37466 5.42448 5.42589 5.49721 5.99415 6.13943 6.64516 6.67902 7.40270 8.79163 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014650 B = 0.004084 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.788034 B = 6855.034257 C = 7585.578203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.146 4.146 3 C 0.112 3.888 4 N -0.987 5.987 5 C 0.126 3.874 6 C 0.441 3.559 7 O -0.539 6.539 8 O -0.355 6.355 9 C 0.049 3.951 10 C -0.143 4.143 11 S 2.614 3.386 12 O -0.991 6.991 13 O -0.989 6.989 14 C -0.553 4.553 15 C -0.018 4.018 16 C -0.609 4.609 17 H 0.033 0.967 18 C 0.002 3.998 19 N -0.913 5.913 20 Si 1.090 2.910 21 H -0.281 1.281 22 H -0.276 1.276 23 H -0.270 1.270 24 C -0.182 4.182 25 C -0.151 4.151 26 H 0.042 0.958 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.049 0.951 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.067 0.933 33 H 0.177 0.823 34 H 0.140 0.860 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.098 0.902 40 H 0.122 0.878 41 H 0.150 0.850 42 H 0.274 0.726 43 H 0.078 0.922 44 H 0.107 0.893 45 H 0.103 0.897 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.626 0.124 21.108 21.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.185 4.185 3 C -0.013 4.013 4 N -0.823 5.823 5 C -0.001 4.001 6 C 0.283 3.717 7 O -0.428 6.428 8 O -0.271 6.271 9 C -0.024 4.024 10 C -0.200 4.200 11 S 2.713 3.287 12 O -0.981 6.981 13 O -0.979 6.979 14 C -0.687 4.687 15 C -0.020 4.020 16 C -0.646 4.646 17 H 0.051 0.949 18 C -0.201 4.201 19 N -0.547 5.547 20 Si 0.913 3.087 21 H -0.207 1.207 22 H -0.201 1.201 23 H -0.195 1.195 24 C -0.219 4.219 25 C -0.190 4.190 26 H 0.061 0.939 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.068 0.932 30 H 0.119 0.881 31 H 0.116 0.884 32 H 0.085 0.915 33 H 0.194 0.806 34 H 0.158 0.842 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.116 0.884 40 H 0.140 0.860 41 H 0.168 0.832 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.125 0.875 45 H 0.122 0.878 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.475 1.162 19.275 19.366 hybrid contribution 0.846 0.141 0.806 1.177 sum -0.629 1.302 20.081 20.133 Atomic orbital electron populations 1.21704 0.94064 1.02799 1.02235 1.22057 0.97443 0.95449 1.03530 1.21618 0.76867 0.98552 1.04241 1.57445 1.15865 1.89205 1.19752 1.21183 1.01630 0.90629 0.86626 1.25044 0.73866 0.93801 0.78999 1.90674 1.46936 1.42743 1.62475 1.86483 1.69696 1.34897 1.36036 1.23303 1.01939 0.80259 0.96937 1.21814 1.00541 1.04462 0.93173 1.04760 0.72887 0.78482 0.72547 1.93451 1.45552 1.76590 1.82537 1.93465 1.65523 1.72564 1.66325 1.30000 1.09540 1.21895 1.07221 1.18657 0.89317 1.01334 0.92690 1.21584 1.32363 1.00033 1.10605 0.94885 1.26733 0.92662 0.96616 1.04100 1.70808 1.39926 1.14351 1.29636 0.83296 0.76844 0.75287 0.73251 1.20691 1.20142 1.19461 1.23135 0.95000 1.01975 1.01776 1.22773 1.04459 0.91113 1.00670 0.93883 0.91197 0.90810 0.93206 0.88070 0.88353 0.91499 0.80622 0.84191 0.92629 0.91110 0.90463 0.91313 0.88380 0.86011 0.83223 0.91542 0.90319 0.87483 0.87843 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.91 71.98 0.71 -2.20 16 2 C -0.15 -3.17 6.26 30.60 0.19 -2.98 16 3 C 0.11 3.06 5.64 86.38 0.49 3.55 16 4 N -0.99 -29.90 2.21 -519.85 -1.15 -31.05 16 5 C 0.13 2.76 5.85 85.63 0.50 3.26 16 6 C 0.44 12.41 8.02 71.24 0.57 12.98 16 7 O -0.54 -19.94 16.17 21.94 0.35 -19.59 16 8 O -0.36 -8.24 10.22 -51.44 -0.53 -8.77 16 9 C 0.05 0.98 6.19 71.98 0.45 1.43 16 10 C -0.14 -1.72 10.29 71.98 0.74 -0.97 16 11 S 2.61 110.56 5.01 -56.49 -0.28 110.27 16 12 O -0.99 -45.18 16.99 -127.65 -2.17 -47.35 16 13 O -0.99 -51.85 16.04 -127.65 -2.05 -53.90 16 14 C -0.55 -21.74 5.98 71.98 0.43 -21.31 16 15 C -0.02 -0.84 0.95 -52.93 -0.05 -0.89 16 16 C -0.61 -34.57 7.90 25.60 0.20 -34.37 16 17 H 0.03 2.00 7.82 -2.91 -0.02 1.98 16 18 C 0.00 0.13 5.39 84.65 0.46 0.59 16 19 N -0.91 -52.09 13.57 21.45 0.29 -51.80 16 20 Si 1.09 52.11 29.91 68.60 2.05 54.16 16 21 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 23 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 24 C -0.18 -7.54 9.95 30.62 0.30 -7.24 16 25 C -0.15 -6.36 8.75 30.62 0.27 -6.09 16 26 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.05 1.30 7.22 -2.39 -0.02 1.28 16 30 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.10 2.24 8.11 -2.39 -0.02 2.22 16 32 H 0.07 2.29 6.82 -2.39 -0.02 2.27 16 33 H 0.18 1.88 8.11 -2.39 -0.02 1.86 16 34 H 0.14 2.61 7.61 -2.39 -0.02 2.59 16 35 H 0.06 1.27 8.13 -2.39 -0.02 1.25 16 36 H 0.07 1.36 8.13 -2.39 -0.02 1.34 16 37 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 38 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 40 H 0.12 4.97 6.86 -2.39 -0.02 4.95 16 41 H 0.15 4.27 8.11 -2.39 -0.02 4.25 16 42 H 0.27 15.03 6.17 -92.71 -0.57 14.45 16 43 H 0.08 3.39 8.14 -2.38 -0.02 3.37 16 44 H 0.11 3.74 8.14 -2.38 -0.02 3.72 16 45 H 0.10 3.63 8.14 -2.39 -0.02 3.61 16 46 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -81.87 395.15 2.93 -78.93 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: 1.15 Total: 23.32 kcal Atomic # 6 Polarization: -59.50 SS G_CDS: 5.26 Total: -54.24 kcal Atomic # 7 Polarization: -81.99 SS G_CDS: -0.86 Total: -82.84 kcal Atomic # 8 Polarization: -125.22 SS G_CDS: -4.39 Total: -129.60 kcal Atomic # 14 Polarization: 52.11 SS G_CDS: 2.05 Total: 54.16 kcal Atomic # 16 Polarization: 110.56 SS G_CDS: -0.28 Total: 110.27 kcal Total: -81.87 2.93 -78.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346440421.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.824 kcal (2) G-P(sol) polarization free energy of solvation -81.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds