Wall clock time and date at job start Tue Mar 31 2020 18:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34227 * 116.99829 * 2 1 4 4 O 1.20829 * 120.00453 * 0.02562 * 3 2 1 5 5 C 1.50706 * 120.00015 * 179.97438 * 3 2 1 6 6 C 1.53002 * 110.05430 * 59.87945 * 5 3 2 7 7 S 1.81399 * 109.46896 * 55.69908 * 6 5 3 8 8 O 1.42104 * 110.54251 * 294.27902 * 7 6 5 9 9 O 1.42104 * 110.54507 * 71.03194 * 7 6 5 10 10 N 1.65607 * 104.44649 * 182.65548 * 7 6 5 11 11 C 1.46500 * 119.99808 * 269.99768 * 10 7 6 12 12 C 1.46496 * 119.99821 * 90.00392 * 10 7 6 13 13 H 1.09004 * 109.47356 * 359.97438 * 12 10 7 14 14 C 1.53003 * 109.46761 * 239.99776 * 12 10 7 15 15 C 1.50698 * 109.47492 * 119.99975 * 12 10 7 16 16 H 1.08001 * 119.99784 * 359.97438 * 15 12 10 17 17 C 1.37876 * 120.00434 * 179.97438 * 15 12 10 18 18 N 1.31524 * 119.99718 * 359.97438 * 17 15 12 19 19 Si 1.86793 * 120.00384 * 179.97438 * 17 15 12 20 20 H 1.48503 * 109.47014 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47293 * 119.99646 * 19 17 15 22 22 H 1.48497 * 109.47560 * 240.00038 * 19 17 15 23 23 C 1.53870 * 110.03183 * 181.29557 * 5 3 2 24 24 C 1.54274 * 106.59741 * 119.28428 * 23 5 3 25 25 C 1.54890 * 104.19610 * 336.39090 * 24 23 5 26 26 C 1.54271 * 110.03216 * 298.46470 * 5 3 2 27 27 H 1.08993 * 109.47083 * 300.00101 * 1 2 3 28 28 H 1.09007 * 109.47141 * 59.99691 * 1 2 3 29 29 H 1.08998 * 109.47216 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47228 * 175.69827 * 6 5 3 31 31 H 1.08995 * 109.46824 * 295.69806 * 6 5 3 32 32 H 1.08997 * 109.47084 * 90.00588 * 11 10 7 33 33 H 1.09003 * 109.46771 * 210.00480 * 11 10 7 34 34 H 1.08998 * 109.47287 * 330.00271 * 11 10 7 35 35 H 1.08995 * 109.46965 * 299.99809 * 14 12 10 36 36 H 1.08995 * 109.47264 * 60.00236 * 14 12 10 37 37 H 1.09004 * 109.46777 * 180.02562 * 14 12 10 38 38 H 0.97003 * 119.99665 * 179.97438 * 18 17 15 39 39 H 1.08999 * 110.03383 * 238.56935 * 23 5 3 40 40 H 1.08997 * 110.03944 * 0.02562 * 23 5 3 41 41 H 1.09006 * 110.48336 * 95.06536 * 24 23 5 42 42 H 1.08991 * 110.49061 * 217.70678 * 24 23 5 43 43 H 1.09000 * 110.75487 * 279.62841 * 25 24 23 44 44 H 1.09001 * 110.75529 * 156.25051 * 25 24 23 45 45 H 1.09002 * 110.48339 * 23.00214 * 26 5 3 46 46 H 1.08996 * 110.48619 * 145.64597 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.1285 0.5819 -1.2422 7 16 3.3917 1.3152 -2.7288 8 8 1.9973 1.0459 -2.7789 9 8 3.8921 2.6287 -2.9375 10 7 4.0231 0.4339 -3.9807 11 6 5.2741 0.8558 -4.6157 12 6 3.3306 -0.7675 -4.4531 13 1 2.4262 -0.9209 -3.8643 14 6 4.2507 -1.9802 -4.2990 15 6 2.9628 -0.5974 -5.9046 16 1 3.2189 0.3147 -6.4232 17 6 2.2994 -1.6060 -6.5706 18 7 1.9880 -2.7170 -5.9391 19 14 1.8429 -1.3948 -8.3695 20 1 2.3027 -0.0649 -8.8440 21 1 2.4947 -2.4594 -9.1740 22 1 0.3689 -1.4924 -8.5209 23 6 4.0170 2.7458 0.0332 24 6 4.8385 2.9264 1.3264 25 6 4.3374 1.7935 2.2561 26 6 4.1297 0.6130 1.2751 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 5.2105 0.7104 -1.2718 31 1 3.8898 -0.4810 -1.2048 32 1 6.1164 0.3906 -4.1037 33 1 5.2713 0.5506 -5.6621 34 1 5.3653 1.9402 -4.5538 35 1 5.1552 -1.8271 -4.8875 36 1 4.5167 -2.1034 -3.2492 37 1 3.7356 -2.8741 -4.6509 38 1 1.5210 -3.4264 -6.4076 39 1 4.6362 2.9659 -0.8364 40 1 3.1473 3.4026 0.0490 41 1 5.9028 2.8093 1.1217 42 1 4.6398 3.9012 1.7716 43 1 3.3964 2.0713 2.7309 44 1 5.0907 1.5461 3.0042 45 1 3.4136 -0.1004 1.6829 46 1 5.0794 0.1223 1.0622 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349716186.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:26 Heat of formation + Delta-G solvation = -158.039334 kcal Electronic energy + Delta-G solvation = -29518.237841 eV Core-core repulsion = 25535.393686 eV Total energy + Delta-G solvation = -3982.844155 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.94256 -38.19012 -36.61957 -36.27376 -36.19896 -35.34870 -32.59378 -32.09184 -29.13794 -29.04555 -27.63617 -26.03149 -25.47651 -25.11574 -22.86112 -21.06854 -20.77371 -19.49200 -18.24147 -17.32598 -17.15076 -17.04053 -16.46923 -16.21380 -15.71759 -15.46484 -15.23325 -14.71741 -14.56832 -13.69890 -13.57519 -13.42532 -13.24726 -13.11162 -12.93183 -12.67130 -12.15215 -11.98710 -11.93482 -11.84431 -11.77477 -11.56999 -11.38062 -11.33360 -11.24377 -11.16719 -11.10249 -10.91662 -10.83787 -10.73691 -10.60978 -10.51260 -10.28027 -10.23477 -10.16071 -9.99012 -9.27757 -8.46178 -7.97058 -6.08261 -4.14203 0.70316 2.14853 2.68801 3.24594 3.27627 3.35984 3.41148 4.06282 4.14793 4.28542 4.39216 4.49996 4.61750 4.78444 4.93885 5.09075 5.20748 5.23716 5.27058 5.27268 5.39824 5.43352 5.44156 5.59601 5.66071 5.69802 5.72121 5.78249 5.89097 5.96621 6.04022 6.06627 6.17476 6.31760 6.49206 6.63538 6.74082 6.80047 6.99113 7.40203 7.60735 7.73910 7.77594 8.03003 8.26099 8.87766 9.51175 10.97598 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.017953 B = 0.004340 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.294239 B = 6450.616883 C = 7021.265670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.343 6.343 3 C 0.457 3.543 4 O -0.492 6.492 5 C -0.037 4.037 6 C -0.637 4.637 7 S 2.593 3.407 8 O -0.939 6.939 9 O -0.964 6.964 10 N -0.980 5.980 11 C 0.091 3.909 12 C 0.264 3.736 13 H 0.061 0.939 14 C -0.150 4.150 15 C -0.517 4.517 16 H 0.064 0.936 17 C 0.063 3.937 18 N -0.890 5.890 19 Si 0.898 3.102 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.283 1.283 23 C -0.149 4.149 24 C -0.117 4.117 25 C -0.130 4.130 26 C -0.104 4.104 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.103 0.897 30 H 0.142 0.858 31 H 0.144 0.856 32 H 0.038 0.962 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.034 0.966 36 H 0.009 0.991 37 H 0.094 0.906 38 H 0.263 0.737 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.080 0.920 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.261 4.176 15.398 17.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.259 6.259 3 C 0.298 3.702 4 O -0.379 6.379 5 C -0.040 4.040 6 C -0.763 4.763 7 S 2.685 3.315 8 O -0.929 6.929 9 O -0.954 6.954 10 N -0.820 5.820 11 C -0.055 4.055 12 C 0.162 3.838 13 H 0.079 0.921 14 C -0.210 4.210 15 C -0.556 4.556 16 H 0.082 0.918 17 C -0.139 4.139 18 N -0.529 5.529 19 Si 0.725 3.275 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.209 1.209 23 C -0.186 4.186 24 C -0.154 4.154 25 C -0.167 4.167 26 C -0.143 4.143 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.121 0.879 30 H 0.160 0.840 31 H 0.162 0.838 32 H 0.056 0.944 33 H 0.105 0.895 34 H 0.084 0.916 35 H 0.053 0.947 36 H 0.028 0.972 37 H 0.113 0.887 38 H 0.072 0.928 39 H 0.114 0.886 40 H 0.117 0.883 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.094 0.906 45 H 0.099 0.901 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.334 4.995 15.287 16.944 hybrid contribution -0.033 -0.614 -0.765 0.981 sum 5.301 4.381 14.522 16.068 Atomic orbital electron populations 1.23350 0.75647 1.04011 1.02794 1.86427 1.24026 1.32193 1.83236 1.23444 0.91558 0.82197 0.73015 1.90639 1.66567 1.36211 1.44445 1.20823 0.87481 0.98583 0.97104 1.31072 1.13985 1.14080 1.17154 1.05450 0.75510 0.74820 0.75726 1.93611 1.28697 1.85259 1.85311 1.93509 1.81870 1.35870 1.84191 1.57409 1.35455 1.42975 1.46130 1.21378 0.84465 0.99116 1.00543 1.18807 0.90485 0.78498 0.96046 0.92109 1.22162 0.99611 1.02742 0.96460 1.21346 1.37179 1.02162 0.94962 0.91827 1.24902 0.95392 0.95084 0.98502 1.69870 1.40507 1.06089 1.36440 0.86444 0.78310 0.78159 0.84545 1.19689 1.20963 1.20868 1.22790 1.02714 0.92406 1.00695 1.22309 0.99642 0.99050 0.94432 1.22590 1.01597 0.94981 0.97536 1.22484 1.02081 0.97870 0.91832 0.92321 0.90651 0.87885 0.83993 0.83796 0.94378 0.89536 0.91575 0.94652 0.97164 0.88722 0.92755 0.88607 0.88319 0.90953 0.90857 0.91274 0.90621 0.90127 0.89306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.56 101.05 1.07 1.56 16 2 O -0.34 -5.61 10.22 -39.25 -0.40 -6.01 16 3 C 0.46 7.75 4.35 36.01 0.16 7.91 16 4 O -0.49 -9.35 14.96 -18.75 -0.28 -9.63 16 5 C -0.04 -0.53 0.62 -154.54 -0.10 -0.62 16 6 C -0.64 -9.24 4.82 37.16 0.18 -9.07 16 7 S 2.59 51.56 4.81 -107.50 -0.52 51.04 16 8 O -0.94 -22.23 14.98 -57.54 -0.86 -23.09 16 9 O -0.96 -19.91 14.68 -57.54 -0.84 -20.75 16 10 N -0.98 -20.39 2.99 -115.85 -0.35 -20.74 16 11 C 0.09 1.61 9.64 59.85 0.58 2.19 16 12 C 0.26 6.44 2.57 -69.08 -0.18 6.26 16 13 H 0.06 1.63 6.87 -51.93 -0.36 1.28 16 14 C -0.15 -3.34 8.97 37.16 0.33 -3.00 16 15 C -0.52 -13.93 7.99 -34.44 -0.28 -14.21 16 16 H 0.06 1.72 7.33 -52.49 -0.38 1.33 16 17 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 18 N -0.89 -24.55 11.32 55.43 0.63 -23.92 16 19 Si 0.90 21.11 29.54 -169.99 -5.02 16.08 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 C -0.15 -2.01 5.46 -25.61 -0.14 -2.15 16 24 C -0.12 -1.14 6.83 -25.07 -0.17 -1.31 16 25 C -0.13 -1.18 6.91 -24.74 -0.17 -1.35 16 26 C -0.10 -1.09 5.89 -25.07 -0.15 -1.24 16 27 H 0.06 0.70 8.13 -51.93 -0.42 0.27 16 28 H 0.07 1.20 8.13 -51.93 -0.42 0.77 16 29 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.14 1.58 8.14 -51.93 -0.42 1.15 16 31 H 0.14 1.98 8.14 -51.93 -0.42 1.56 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.09 1.60 7.02 -51.93 -0.36 1.24 16 34 H 0.07 1.10 6.91 -51.93 -0.36 0.74 16 35 H 0.03 0.74 7.67 -51.93 -0.40 0.34 16 36 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 37 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 38 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 39 H 0.10 1.32 5.98 -51.93 -0.31 1.01 16 40 H 0.10 1.49 6.40 -51.93 -0.33 1.16 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.08 0.82 7.62 -51.93 -0.40 0.43 16 46 H 0.09 0.78 7.85 -51.93 -0.41 0.37 16 LS Contribution 372.29 15.07 5.61 5.61 Total: -1.00 -33.24 372.29 -8.40 -41.64 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -7.41 Total: 3.17 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: 1.04 Total: -13.41 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: 0.28 Total: -44.66 kcal Atomic # 8 Polarization: -57.09 SS G_CDS: -2.39 Total: -59.48 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 51.56 SS G_CDS: -0.52 Total: 51.04 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.24 -8.40 -41.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349716186.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.395 kcal (2) G-P(sol) polarization free energy of solvation -33.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds