Wall clock time and date at job start Tue Mar 31 2020 17:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46866 * 2 1 4 4 O 1.21296 * 119.99979 * 359.97438 * 3 2 1 5 5 C 1.46864 * 120.00149 * 180.02562 * 3 2 1 6 6 C 1.40036 * 120.10773 * 359.72629 * 5 3 2 7 7 C 1.37120 * 119.87910 * 179.76922 * 6 5 3 8 8 C 1.39085 * 120.11455 * 0.50544 * 7 6 5 9 9 O 1.35660 * 119.88216 * 179.76794 * 8 7 6 10 10 C 1.42900 * 117.00430 * 359.97438 * 9 8 7 11 11 C 1.50704 * 109.47042 * 180.02562 * 10 9 8 12 12 O 1.21281 * 120.00265 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99719 * 179.97438 * 11 10 9 14 14 C 1.47071 * 136.05782 * 359.63538 * 13 11 10 15 15 C 1.53237 * 88.08218 * 207.20112 * 14 13 11 16 16 O 1.42894 * 114.02052 * 87.70936 * 15 14 13 17 17 C 1.50702 * 114.32406 * 220.46930 * 15 14 13 18 18 H 1.07999 * 119.99998 * 93.76274 * 17 15 14 19 19 C 1.37874 * 119.99826 * 273.75318 * 17 15 14 20 20 N 1.31512 * 120.00159 * 0.02562 * 19 17 15 21 21 Si 1.86805 * 119.99966 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.46990 * 90.00152 * 21 19 17 23 23 H 1.48499 * 109.47064 * 210.00173 * 21 19 17 24 24 H 1.48497 * 109.47038 * 330.00215 * 21 19 17 25 25 C 1.47065 * 136.05633 * 179.97438 * 13 11 10 26 26 C 1.39075 * 120.23104 * 359.74377 * 8 7 6 27 27 C 1.37119 * 120.11427 * 359.97438 * 26 8 7 28 28 H 1.09000 * 109.47050 * 299.99952 * 1 2 3 29 29 H 1.09001 * 109.46801 * 60.00064 * 1 2 3 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46955 * 120.00219 * 2 1 3 32 32 H 1.09000 * 109.47050 * 240.00048 * 2 1 3 33 33 H 1.08002 * 120.06573 * 0.02562 * 6 5 3 34 34 H 1.08001 * 119.94432 * 180.22789 * 7 6 5 35 35 H 1.09002 * 109.47149 * 300.00103 * 10 9 8 36 36 H 1.09001 * 109.47163 * 60.00273 * 10 9 8 37 37 H 1.09003 * 113.46455 * 321.92810 * 14 13 11 38 38 H 1.08993 * 113.47238 * 92.37286 * 14 13 11 39 39 H 0.96706 * 113.99977 * 86.38935 * 16 15 14 40 40 H 0.96998 * 120.00178 * 179.97438 * 20 19 17 41 41 H 1.09009 * 113.46788 * 267.62076 * 25 13 11 42 42 H 1.09001 * 113.46946 * 38.06577 * 25 13 11 43 43 H 1.08000 * 119.94769 * 179.97438 * 26 8 7 44 44 H 1.08005 * 120.05827 * 179.97438 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3427 -0.0005 5 6 3.4762 1.6893 -0.0006 6 6 4.3883 0.6267 0.0047 7 6 5.7354 0.8827 -0.0007 8 6 6.1963 2.1949 -0.0007 9 8 7.5301 2.4428 -0.0012 10 6 8.4006 1.3096 -0.0012 11 6 9.8334 1.7768 -0.0012 12 8 10.0843 2.9634 -0.0017 13 7 10.8359 0.8760 -0.0006 14 6 10.9415 -0.5909 0.0065 15 6 12.2993 -0.4383 0.7002 16 8 12.2196 -0.3653 2.1251 17 6 13.3585 -1.3905 0.2077 18 1 14.0378 -1.0849 -0.5743 19 6 13.4603 -2.6516 0.7555 20 7 12.6329 -3.0238 1.7075 21 14 14.7737 -3.8317 0.1454 22 1 16.0103 -3.6537 0.9480 23 1 14.2886 -5.2281 0.2865 24 1 15.0661 -3.5512 -1.2832 25 6 12.3057 0.9274 -0.0009 26 6 5.2947 3.2538 -0.0006 27 6 3.9456 3.0087 -0.0011 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 4.0314 -0.3927 0.0087 34 1 6.4397 0.0640 -0.0004 35 1 8.2148 0.7087 0.8890 36 1 8.2142 0.7082 -0.8910 37 1 10.1901 -1.0771 0.6287 38 1 11.0098 -1.0261 -0.9904 39 1 12.2158 -1.2273 2.5635 40 1 12.7043 -3.9112 2.0926 41 1 12.7408 0.9003 -1.0000 42 1 12.7121 1.7298 0.6149 43 1 5.6576 4.2710 -0.0002 44 1 3.2462 3.8317 -0.0007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356551091.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:58 Heat of formation + Delta-G solvation = -112.573551 kcal Electronic energy + Delta-G solvation = -27315.936227 eV Core-core repulsion = 23199.619665 eV Total energy + Delta-G solvation = -4116.316562 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.75814 -41.19735 -40.41502 -39.14438 -37.97702 -35.91642 -34.11443 -33.94271 -32.34962 -31.75076 -31.07381 -29.07772 -27.00367 -26.80304 -25.93669 -24.12423 -23.22213 -21.93819 -20.60193 -20.06635 -19.60577 -19.24888 -17.97327 -17.83894 -17.56168 -17.36302 -17.04034 -16.39879 -16.37045 -16.05141 -16.00281 -15.86043 -15.22449 -14.93453 -14.60455 -14.58470 -14.36758 -14.20959 -14.00206 -13.78803 -13.48271 -13.42312 -13.38953 -13.09089 -12.79321 -12.77227 -12.60569 -12.20800 -12.20011 -12.14393 -11.99241 -11.97195 -11.41643 -10.99452 -10.69222 -10.64942 -10.25574 -10.20000 -9.67398 -9.38810 -8.26970 -6.43097 -0.35477 0.29160 1.29771 1.39505 1.43556 1.48824 1.54152 1.61644 2.36110 2.44369 2.72647 2.95445 3.06974 3.26366 3.65566 3.75056 3.78512 3.91250 3.97653 4.04618 4.11812 4.18817 4.27566 4.31185 4.35818 4.43176 4.52553 4.61729 4.76345 4.81674 4.86000 4.92494 4.93179 5.03698 5.07690 5.08807 5.18771 5.24477 5.32661 5.36906 5.56451 5.74537 5.91370 6.16256 6.58437 6.62610 6.74924 6.98378 7.30654 7.50275 8.79288 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.017502 B = 0.002129 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.465274 B =13151.048895 C =14411.774875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.167 4.167 3 C 0.400 3.600 4 O -0.500 6.500 5 C -0.228 4.228 6 C -0.013 4.013 7 C -0.225 4.225 8 C 0.148 3.852 9 O -0.312 6.312 10 C 0.057 3.943 11 C 0.530 3.470 12 O -0.587 6.587 13 N -0.634 5.634 14 C 0.085 3.915 15 C 0.217 3.783 16 O -0.588 6.588 17 C -0.550 4.550 18 H 0.075 0.925 19 C 0.035 3.965 20 N -0.915 5.915 21 Si 0.968 3.032 22 H -0.282 1.282 23 H -0.280 1.280 24 H -0.265 1.265 25 C 0.108 3.892 26 C -0.177 4.177 27 C -0.028 4.028 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.082 0.918 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.176 0.824 34 H 0.158 0.842 35 H 0.115 0.885 36 H 0.127 0.873 37 H 0.074 0.926 38 H 0.104 0.896 39 H 0.390 0.610 40 H 0.277 0.723 41 H 0.108 0.892 42 H 0.052 0.948 43 H 0.135 0.865 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.226 -2.272 -4.619 18.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.204 4.204 3 C 0.282 3.718 4 O -0.379 6.379 5 C -0.229 4.229 6 C -0.031 4.031 7 C -0.243 4.243 8 C 0.102 3.898 9 O -0.224 6.224 10 C -0.021 4.021 11 C 0.320 3.680 12 O -0.468 6.468 13 N -0.368 5.368 14 C -0.038 4.038 15 C 0.175 3.825 16 O -0.401 6.401 17 C -0.588 4.588 18 H 0.093 0.907 19 C -0.166 4.166 20 N -0.556 5.556 21 Si 0.793 3.207 22 H -0.208 1.208 23 H -0.206 1.206 24 H -0.190 1.190 25 C -0.014 4.014 26 C -0.196 4.196 27 C -0.046 4.046 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.141 0.859 32 H 0.143 0.857 33 H 0.193 0.807 34 H 0.176 0.824 35 H 0.133 0.867 36 H 0.144 0.856 37 H 0.093 0.907 38 H 0.122 0.878 39 H 0.247 0.753 40 H 0.087 0.913 41 H 0.126 0.874 42 H 0.070 0.930 43 H 0.153 0.847 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -18.639 -0.367 -4.617 19.206 hybrid contribution 1.003 -0.823 0.097 1.301 sum -17.636 -1.190 -4.520 18.245 Atomic orbital electron populations 1.21611 0.94206 1.02731 1.01750 1.22084 0.97879 0.93547 1.06914 1.22880 0.87216 0.92433 0.69291 1.90513 1.59120 1.49280 1.39024 1.20630 0.95704 0.94320 1.12249 1.21475 0.90982 1.00194 0.90471 1.21481 0.98365 0.95062 1.09386 1.19728 0.81989 0.95110 0.92998 1.86072 1.14425 1.34214 1.87731 1.22474 0.85336 0.87834 1.06436 1.20133 0.86771 0.84742 0.76361 1.90672 1.85187 1.17926 1.53001 1.49632 1.07064 1.09559 1.70521 1.24096 1.00427 0.77146 1.02083 1.19783 0.92143 0.90975 0.79554 1.86044 1.96565 1.37703 1.19781 1.21626 1.17290 0.98181 1.21714 0.90712 1.25711 0.97277 0.99257 0.94362 1.69300 1.37888 1.21648 1.26765 0.85395 0.78655 0.77653 0.78972 1.20832 1.20570 1.18964 1.23427 0.78653 0.98470 1.00885 1.20398 0.91987 0.98840 1.08335 1.21161 0.94078 0.97255 0.92144 0.93553 0.93486 0.89890 0.85864 0.85747 0.80658 0.82424 0.86728 0.85576 0.90721 0.87843 0.75339 0.91295 0.87423 0.92988 0.84702 0.84345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.20 71.98 0.66 -1.00 16 2 C -0.17 -1.56 5.02 29.85 0.15 -1.41 16 3 C 0.40 7.08 7.11 27.94 0.20 7.28 16 4 O -0.50 -12.58 15.97 -3.08 -0.05 -12.63 16 5 C -0.23 -4.13 5.87 -20.15 -0.12 -4.25 16 6 C -0.01 -0.19 9.44 22.44 0.21 0.03 16 7 C -0.22 -3.95 8.99 22.21 0.20 -3.76 16 8 C 0.15 3.60 6.70 22.67 0.15 3.75 16 9 O -0.31 -9.48 9.65 -70.72 -0.68 -10.16 16 10 C 0.06 1.54 5.04 71.24 0.36 1.90 16 11 C 0.53 20.24 8.15 87.66 0.71 20.96 16 12 O -0.59 -27.48 17.28 16.00 0.28 -27.21 16 13 N -0.63 -24.33 3.69 -859.16 -3.17 -27.51 16 14 C 0.08 3.12 7.82 83.09 0.65 3.77 16 15 C 0.22 9.61 1.57 -11.28 -0.02 9.60 16 16 O -0.59 -28.93 13.53 -148.98 -2.02 -30.95 16 17 C -0.55 -25.41 8.69 25.60 0.22 -25.18 16 18 H 0.07 3.35 7.81 -2.91 -0.02 3.33 16 19 C 0.03 1.59 5.40 84.65 0.46 2.04 16 20 N -0.92 -42.88 11.01 21.45 0.24 -42.64 16 21 Si 0.97 36.84 29.54 68.60 2.03 38.86 16 22 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16 23 H -0.28 -10.47 7.11 99.48 0.71 -9.76 16 24 H -0.27 -9.80 7.11 99.48 0.71 -9.10 16 25 C 0.11 4.42 8.04 83.19 0.67 5.09 16 26 C -0.18 -4.16 9.95 22.21 0.22 -3.94 16 27 C -0.03 -0.60 9.57 22.44 0.21 -0.39 16 28 H 0.05 0.65 8.10 -2.39 -0.02 0.63 16 29 H 0.05 0.65 8.10 -2.39 -0.02 0.63 16 30 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.12 0.62 8.08 -2.39 -0.02 0.60 16 32 H 0.12 0.59 8.09 -2.39 -0.02 0.57 16 33 H 0.18 0.97 7.04 -2.91 -0.02 0.95 16 34 H 0.16 2.10 6.27 -2.91 -0.02 2.08 16 35 H 0.12 2.66 7.65 -2.39 -0.02 2.64 16 36 H 0.13 2.56 7.65 -2.39 -0.02 2.54 16 37 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.10 3.44 8.10 -2.39 -0.02 3.42 16 39 H 0.39 19.40 6.33 -74.05 -0.47 18.93 16 40 H 0.28 12.31 8.31 -92.71 -0.77 11.54 16 41 H 0.11 3.93 8.10 -2.38 -0.02 3.91 16 42 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.14 3.12 8.06 -2.91 -0.02 3.09 16 44 H 0.14 2.85 7.64 -2.91 -0.02 2.83 16 Total: -1.00 -65.88 378.29 2.13 -63.75 By element: Atomic # 1 Polarization: 33.43 SS G_CDS: 0.56 Total: 33.99 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: 4.95 Total: 14.49 kcal Atomic # 7 Polarization: -67.21 SS G_CDS: -2.94 Total: -70.15 kcal Atomic # 8 Polarization: -78.47 SS G_CDS: -2.47 Total: -80.94 kcal Atomic # 14 Polarization: 36.84 SS G_CDS: 2.03 Total: 38.86 kcal Total: -65.88 2.13 -63.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356551091.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.823 kcal (2) G-P(sol) polarization free energy of solvation -65.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds