Wall clock time and date at job start Tue Mar 31 2020 17:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34227 * 116.99682 * 2 1 4 4 O 1.20827 * 120.00309 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99654 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.70001 * 6.67235 * 5 3 2 7 7 C 1.52757 * 109.50956 * 246.55240 * 5 3 2 8 8 C 1.53041 * 109.38434 * 185.70495 * 7 5 3 9 9 H 1.08999 * 109.45853 * 181.26032 * 8 7 5 10 10 C 1.52998 * 109.45150 * 301.22918 * 8 7 5 11 11 C 1.53043 * 109.53346 * 61.24174 * 8 7 5 12 12 C 1.53186 * 109.31489 * 298.63388 * 11 8 7 13 13 N 1.46925 * 108.77587 * 54.63657 * 12 11 8 14 14 S 1.65597 * 120.63009 * 126.36634 * 13 12 11 15 15 O 1.42110 * 104.27615 * 151.23829 * 14 13 12 16 16 O 1.42100 * 104.27819 * 23.38715 * 14 13 12 17 17 C 1.81394 * 104.45137 * 267.31125 * 14 13 12 18 18 C 1.53003 * 109.47051 * 180.02562 * 17 14 13 19 19 C 1.53006 * 109.46901 * 179.97438 * 18 17 14 20 20 C 1.50703 * 109.46875 * 179.97438 * 19 18 17 21 21 H 1.08001 * 120.00176 * 0.02562 * 20 19 18 22 22 C 1.37879 * 119.99898 * 179.97438 * 20 19 18 23 23 N 1.31514 * 119.99828 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00008 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47230 * 90.00258 * 24 22 20 26 26 H 1.48497 * 109.47063 * 210.00525 * 24 22 20 27 27 H 1.48507 * 109.46966 * 330.00117 * 24 22 20 28 28 H 1.09000 * 109.47067 * 299.99873 * 1 2 3 29 29 H 1.08995 * 109.47238 * 60.00081 * 1 2 3 30 30 H 1.09004 * 109.46820 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.56462 * 65.67035 * 7 5 3 32 32 H 1.08996 * 109.36238 * 305.61770 * 7 5 3 33 33 H 1.08997 * 109.47414 * 180.02562 * 10 8 7 34 34 H 1.09000 * 109.47015 * 300.06418 * 10 8 7 35 35 H 1.09004 * 109.47120 * 60.05926 * 10 8 7 36 36 H 1.09005 * 109.49354 * 178.68402 * 11 8 7 37 37 H 1.08998 * 109.49932 * 58.59115 * 11 8 7 38 38 H 1.09004 * 109.58761 * 294.84958 * 12 11 8 39 39 H 1.09000 * 109.70814 * 174.49560 * 12 11 8 40 40 H 1.09002 * 109.46998 * 299.99930 * 17 14 13 41 41 H 1.08993 * 109.47402 * 60.00338 * 17 14 13 42 42 H 1.08996 * 109.47394 * 299.99531 * 18 17 14 43 43 H 1.09001 * 109.47491 * 60.00029 * 18 17 14 44 44 H 1.09002 * 109.47213 * 299.99775 * 19 18 17 45 45 H 1.08996 * 109.46826 * 60.00293 * 19 18 17 46 46 H 0.97003 * 119.99775 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9865 0.2763 -0.1202 7 6 4.0463 1.8735 1.3203 8 6 5.5610 2.0843 1.2618 9 1 5.9080 2.4905 2.2118 10 6 6.2520 0.7451 0.9972 11 6 5.8982 3.0635 0.1349 12 6 5.4400 2.4738 -1.2026 13 7 4.0141 2.1333 -1.1057 14 16 2.9311 2.7118 -2.2169 15 8 1.9097 1.7245 -2.2577 16 8 3.7223 2.9949 -3.3629 17 6 2.3039 4.2466 -1.4813 18 6 1.2814 4.8836 -2.4246 19 6 0.7519 6.1780 -1.8037 20 6 -0.2547 6.8057 -2.7331 21 1 -0.4933 6.3290 -3.6724 22 6 -0.8719 7.9881 -2.3838 23 7 -0.5818 8.5683 -1.2398 24 14 -2.1202 8.7659 -3.5354 25 1 -3.4762 8.2522 -3.2154 26 1 -2.0972 10.2411 -3.3669 27 1 -1.7794 8.4226 -4.9395 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.8049 1.1943 2.1380 32 1 3.5518 2.8309 1.4841 33 1 7.3308 0.8948 0.9558 34 1 6.0118 0.0476 1.7996 35 1 5.9054 0.3390 0.0469 36 1 6.9749 3.2312 0.1088 37 1 5.3862 4.0097 0.3098 38 1 6.0163 1.5750 -1.4223 39 1 5.5878 3.2056 -1.9968 40 1 1.8274 4.0237 -0.5266 41 1 3.1314 4.9378 -1.3218 42 1 1.7574 5.1065 -3.3794 43 1 0.4538 4.1924 -2.5837 44 1 0.2757 5.9547 -0.8490 45 1 1.5793 6.8694 -1.6443 46 1 -1.0157 9.4004 -0.9942 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356710220.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:59 Heat of formation + Delta-G solvation = -186.129257 kcal Electronic energy + Delta-G solvation = -29038.695666 eV Core-core repulsion = 25054.633441 eV Total energy + Delta-G solvation = -3984.062226 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.00370 -39.85094 -38.46393 -37.44009 -37.20905 -36.49868 -34.54947 -34.18313 -32.75633 -29.69997 -28.89465 -28.27203 -25.88897 -25.50335 -24.72307 -22.60135 -22.33073 -20.68630 -19.53820 -19.17043 -18.77564 -18.54369 -17.92836 -17.37161 -17.20939 -16.67417 -16.51288 -16.11762 -15.87175 -15.69313 -15.28291 -15.05562 -14.72388 -14.51274 -14.31135 -14.10497 -14.06167 -13.59318 -13.38084 -13.24653 -13.16674 -13.10318 -13.03848 -12.85322 -12.73769 -12.66192 -12.37060 -12.20740 -12.17791 -12.02038 -11.90093 -11.76007 -11.69120 -11.42770 -11.34717 -11.27872 -11.05065 -10.61292 -10.02941 -8.25426 -6.37650 -0.89166 0.89857 1.36785 1.38752 1.42035 1.50248 1.70040 2.37163 2.64577 2.99849 3.07257 3.40870 3.57396 3.75508 3.80188 3.86054 3.99616 4.05770 4.12884 4.20205 4.31135 4.34054 4.40677 4.53638 4.58023 4.61461 4.73403 4.76543 4.80685 4.90214 4.93519 4.98658 5.00311 5.11327 5.25003 5.30429 5.37891 5.40381 5.45577 5.48243 5.57201 5.60731 5.74578 6.15241 6.59389 6.76779 7.31488 8.86457 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.015107 B = 0.003651 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.992924 B = 7667.318254 C = 8261.109564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.346 6.346 3 C 0.457 3.543 4 O -0.535 6.535 5 C 0.167 3.833 6 H 0.138 0.862 7 C -0.123 4.123 8 C -0.080 4.080 9 H 0.096 0.904 10 C -0.156 4.156 11 C -0.136 4.136 12 C 0.110 3.890 13 N -0.986 5.986 14 S 2.616 3.384 15 O -0.982 6.982 16 O -0.980 6.980 17 C -0.607 4.607 18 C -0.097 4.097 19 C 0.037 3.963 20 C -0.555 4.555 21 H 0.059 0.941 22 C 0.003 3.997 23 N -0.930 5.930 24 Si 0.967 3.033 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.264 1.264 28 H 0.067 0.933 29 H 0.048 0.952 30 H 0.136 0.864 31 H 0.104 0.896 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.105 0.895 37 H 0.062 0.938 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.150 0.850 41 H 0.136 0.864 42 H 0.063 0.937 43 H 0.055 0.945 44 H -0.004 1.004 45 H 0.003 0.997 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.561 -19.876 8.354 26.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.260 6.260 3 C 0.302 3.698 4 O -0.426 6.426 5 C 0.060 3.940 6 H 0.155 0.845 7 C -0.162 4.162 8 C -0.099 4.099 9 H 0.114 0.886 10 C -0.213 4.213 11 C -0.175 4.175 12 C -0.013 4.013 13 N -0.827 5.827 14 S 2.714 3.286 15 O -0.972 6.972 16 O -0.971 6.971 17 C -0.738 4.738 18 C -0.136 4.136 19 C -0.001 4.001 20 C -0.593 4.593 21 H 0.077 0.923 22 C -0.196 4.196 23 N -0.569 5.569 24 Si 0.791 3.209 25 H -0.197 1.197 26 H -0.201 1.201 27 H -0.188 1.188 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.154 0.846 31 H 0.122 0.878 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.124 0.876 37 H 0.081 0.919 38 H 0.121 0.879 39 H 0.109 0.891 40 H 0.168 0.832 41 H 0.155 0.845 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.014 0.986 45 H 0.021 0.979 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 15.111 -19.923 7.606 26.136 hybrid contribution -1.348 1.364 -0.033 1.918 sum 13.763 -18.559 7.574 24.315 Atomic orbital electron populations 1.23513 0.74792 1.05559 1.02273 1.86355 1.24897 1.31820 1.82971 1.24002 0.92625 0.82283 0.70938 1.90655 1.68097 1.36679 1.47155 1.20672 0.85136 0.98336 0.89823 0.84483 1.21992 0.98364 1.02265 0.93596 1.21036 0.92183 0.96964 0.99671 0.88596 1.22000 1.01138 0.95863 1.02283 1.22073 1.03244 0.98729 0.93446 1.21896 0.77272 1.02547 0.99579 1.57622 1.20071 1.62770 1.42256 1.04664 0.73231 0.76706 0.74049 1.93464 1.60036 1.57459 1.86214 1.93516 1.68922 1.86675 1.47944 1.30714 1.10290 1.19639 1.13143 1.21216 0.96379 0.98891 0.97127 1.18894 0.94935 0.91211 0.95092 1.21706 1.24339 1.07966 1.05255 0.92282 1.25984 0.99035 0.97484 0.97053 1.70088 1.44230 1.19085 1.23524 0.85422 0.78807 0.77547 0.79149 1.19667 1.20142 1.18789 0.91465 0.93348 0.84617 0.87788 0.91465 0.91096 0.91491 0.92413 0.87646 0.91914 0.87935 0.89136 0.83185 0.84534 0.91867 0.92631 0.98582 0.97872 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.56 113.37 1.20 1.93 16 2 O -0.35 -8.99 10.56 -48.52 -0.51 -9.50 16 3 C 0.46 12.88 4.18 71.24 0.30 13.17 16 4 O -0.53 -18.63 11.41 29.41 0.34 -18.30 16 5 C 0.17 3.39 2.84 44.08 0.13 3.52 16 6 H 0.14 2.04 6.70 -2.39 -0.02 2.03 16 7 C -0.12 -1.86 4.87 30.53 0.15 -1.71 16 8 C -0.08 -0.83 3.19 -10.77 -0.03 -0.87 16 9 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 10 C -0.16 -1.16 8.43 71.98 0.61 -0.56 16 11 C -0.14 -1.70 5.62 30.67 0.17 -1.53 16 12 C 0.11 1.87 5.86 86.36 0.51 2.37 16 13 N -0.99 -23.20 3.22 -495.41 -1.60 -24.80 16 14 S 2.62 88.41 4.73 -56.49 -0.27 88.14 16 15 O -0.98 -37.75 14.00 -117.46 -1.64 -39.39 16 16 O -0.98 -36.59 16.63 -127.65 -2.12 -38.72 16 17 C -0.61 -22.75 5.72 71.98 0.41 -22.33 16 18 C -0.10 -4.52 5.16 30.60 0.16 -4.36 16 19 C 0.04 2.08 4.97 29.85 0.15 2.23 16 20 C -0.55 -33.44 9.11 25.60 0.23 -33.21 16 21 H 0.06 3.44 7.74 -2.91 -0.02 3.41 16 22 C 0.00 0.16 5.46 84.66 0.46 0.62 16 23 N -0.93 -57.81 13.29 21.45 0.28 -57.53 16 24 Si 0.97 45.68 29.54 68.60 2.03 47.71 16 25 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 26 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 27 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 28 H 0.07 1.46 8.13 -2.39 -0.02 1.44 16 29 H 0.05 1.37 8.13 -2.39 -0.02 1.35 16 30 H 0.14 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.07 1.27 8.08 -2.39 -0.02 1.25 16 33 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.06 0.49 4.99 -2.39 -0.01 0.48 16 36 H 0.11 0.83 8.14 -2.38 -0.02 0.81 16 37 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.10 1.26 6.69 -2.38 -0.02 1.24 16 39 H 0.09 1.71 7.01 -2.39 -0.02 1.69 16 40 H 0.15 5.80 5.45 -2.39 -0.01 5.79 16 41 H 0.14 4.50 8.14 -2.39 -0.02 4.48 16 42 H 0.06 2.84 8.14 -2.39 -0.02 2.82 16 43 H 0.05 2.61 8.14 -2.39 -0.02 2.60 16 44 H 0.00 -0.26 8.14 -2.39 -0.02 -0.27 16 45 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 46 H 0.27 15.40 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -80.34 369.62 1.90 -78.44 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 0.96 Total: 14.67 kcal Atomic # 6 Polarization: -45.16 SS G_CDS: 4.43 Total: -40.72 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -1.31 Total: -82.32 kcal Atomic # 8 Polarization: -101.96 SS G_CDS: -3.94 Total: -105.91 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Atomic # 16 Polarization: 88.41 SS G_CDS: -0.27 Total: 88.14 kcal Total: -80.34 1.90 -78.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356710220.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.690 kcal (2) G-P(sol) polarization free energy of solvation -80.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds