Wall clock time and date at job start Tue Mar 31 2020 17:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34236 * 117.00299 * 2 1 4 4 O 1.20826 * 119.99416 * 0.02562 * 3 2 1 5 5 C 1.50691 * 120.00313 * 179.97438 * 3 2 1 6 6 H 1.08996 * 109.58733 * 352.97289 * 5 3 2 7 7 C 1.53198 * 109.58765 * 113.25069 * 5 3 2 8 8 C 1.53038 * 109.31475 * 174.56276 * 7 5 3 9 9 H 1.09000 * 109.45822 * 178.62516 * 8 7 5 10 10 C 1.53001 * 109.45796 * 58.65830 * 8 7 5 11 11 C 1.53038 * 109.54038 * 298.64097 * 8 7 5 12 12 C 1.53190 * 109.31323 * 61.36168 * 11 8 7 13 13 N 1.46920 * 109.70787 * 232.61389 * 5 3 2 14 14 S 1.65605 * 120.62608 * 6.50916 * 13 5 3 15 15 O 1.42101 * 104.27743 * 29.14348 * 14 13 5 16 16 O 1.42104 * 104.27538 * 156.99828 * 14 13 5 17 17 C 1.81401 * 104.45108 * 273.06954 * 14 13 5 18 18 C 1.53002 * 109.46681 * 180.02562 * 17 14 13 19 19 C 1.53002 * 109.46803 * 180.02562 * 18 17 14 20 20 C 1.50694 * 109.47118 * 179.97438 * 19 18 17 21 21 H 1.08005 * 120.00463 * 359.97438 * 20 19 18 22 22 C 1.37885 * 120.00131 * 179.97438 * 20 19 18 23 23 N 1.31512 * 119.99498 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99990 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47173 * 89.99989 * 24 22 20 26 26 H 1.48502 * 109.46706 * 209.99827 * 24 22 20 27 27 H 1.48504 * 109.47202 * 329.99436 * 24 22 20 28 28 H 1.08995 * 109.47523 * 59.99865 * 1 2 3 29 29 H 1.08997 * 109.47413 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47188 * 299.99850 * 1 2 3 31 31 H 1.09005 * 109.49352 * 54.61511 * 7 5 3 32 32 H 1.09001 * 109.52426 * 294.53695 * 7 5 3 33 33 H 1.09004 * 109.47425 * 59.99852 * 10 8 7 34 34 H 1.09003 * 109.47396 * 300.00032 * 10 8 7 35 35 H 1.08995 * 109.47183 * 179.97438 * 10 8 7 36 36 H 1.08997 * 109.49421 * 181.31532 * 11 8 7 37 37 H 1.09007 * 109.49256 * 301.41059 * 11 8 7 38 38 H 1.09000 * 109.58224 * 185.57787 * 12 11 8 39 39 H 1.08996 * 109.70372 * 65.22612 * 12 11 8 40 40 H 1.08998 * 109.47138 * 299.99986 * 17 14 13 41 41 H 1.08996 * 109.47189 * 60.00308 * 17 14 13 42 42 H 1.08998 * 109.47028 * 299.99692 * 18 17 14 43 43 H 1.08996 * 109.47353 * 60.00047 * 18 17 14 44 44 H 1.09007 * 109.46980 * 299.99685 * 19 18 17 45 45 H 1.08996 * 109.47425 * 59.99728 * 19 18 17 46 46 H 0.97003 * 119.99626 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9844 0.2763 0.1266 7 6 4.0499 1.8705 -1.3254 8 6 5.5655 2.0738 -1.2662 9 1 5.9155 2.4748 -2.2174 10 6 6.2496 0.7322 -0.9959 11 6 5.9067 3.0554 -0.1427 12 6 5.4442 2.4732 1.1966 13 7 4.0166 2.1397 1.0996 14 16 2.9355 2.7280 2.2076 15 8 1.9132 1.7422 2.2572 16 8 3.7284 3.0194 3.3503 17 6 2.3090 4.2577 1.4606 18 6 1.2892 4.9037 2.4007 19 6 0.7602 6.1937 1.7704 20 6 -0.2446 6.8296 2.6960 21 1 -0.4826 6.3605 3.6393 22 6 -0.8603 8.0105 2.3387 23 7 -0.5701 8.5820 1.1903 24 14 -2.1054 8.7992 3.4863 25 1 -1.4078 9.7309 4.4085 26 1 -3.1076 9.5503 2.6884 27 1 -2.7906 7.7433 4.2743 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 3.5604 2.8299 -1.4933 32 1 3.8056 1.1899 -2.1411 33 1 6.0077 0.0332 -1.7966 34 1 5.8992 0.3307 -0.0450 35 1 7.3291 0.8767 -0.9541 36 1 6.9842 3.2177 -0.1163 37 1 5.3997 4.0037 -0.3218 38 1 5.5947 3.2092 1.9864 39 1 6.0153 1.5728 1.4227 40 1 3.1371 4.9467 1.2947 41 1 1.8311 4.0279 0.5083 42 1 0.4610 4.2149 2.5670 43 1 1.7674 5.1336 3.3528 44 1 1.5883 6.8827 1.6038 45 1 0.2820 5.9634 0.8185 46 1 -1.0030 9.4129 0.9390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356710221.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:03 Heat of formation + Delta-G solvation = -161.912676 kcal Electronic energy + Delta-G solvation = -29032.955585 eV Core-core repulsion = 25049.943469 eV Total energy + Delta-G solvation = -3983.012116 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.96287 -39.02948 -37.13834 -36.25437 -35.77217 -34.54576 -33.73486 -32.09865 -31.93187 -28.05349 -27.71526 -27.60977 -24.91015 -24.08000 -23.52676 -21.47167 -20.58655 -19.63225 -18.51106 -18.14375 -17.54655 -16.81754 -16.58097 -16.13094 -15.84057 -15.46152 -15.19106 -14.98350 -14.60146 -14.45375 -14.33832 -14.03376 -13.91964 -13.27350 -13.10989 -12.52394 -12.46390 -12.38721 -12.19666 -12.04980 -11.91703 -11.78570 -11.65172 -11.53222 -11.50641 -11.39158 -11.16513 -11.11041 -10.86944 -10.78486 -10.72061 -10.65447 -10.34588 -10.28646 -9.80138 -9.47199 -9.18668 -8.90982 -8.34896 -5.99948 -4.02457 0.45737 1.97457 2.43890 2.82346 3.33443 3.39125 3.43649 3.99955 4.19502 4.28129 4.46859 4.47992 4.49607 4.67790 4.71313 4.76326 4.92564 5.14286 5.18361 5.21735 5.30489 5.33579 5.35123 5.35690 5.38391 5.43161 5.50711 5.62737 5.64881 5.69022 5.83262 5.87472 5.90785 6.02323 6.09614 6.25329 6.37537 6.46199 6.70588 6.98356 7.65054 7.68095 7.77852 7.99066 8.40148 9.03705 9.61427 11.11349 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.015094 B = 0.003650 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.616758 B = 7669.418131 C = 8264.452010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.346 6.346 3 C 0.467 3.533 4 O -0.500 6.500 5 C 0.168 3.832 6 H 0.109 0.891 7 C -0.123 4.123 8 C -0.085 4.085 9 H 0.081 0.919 10 C -0.157 4.157 11 C -0.136 4.136 12 C 0.121 3.879 13 N -0.995 5.995 14 S 2.591 3.409 15 O -0.959 6.959 16 O -0.961 6.961 17 C -0.600 4.600 18 C -0.100 4.100 19 C 0.033 3.967 20 C -0.524 4.524 21 H 0.057 0.943 22 C 0.057 3.943 23 N -0.895 5.895 24 Si 0.893 3.107 25 H -0.280 1.280 26 H -0.286 1.286 27 H -0.273 1.273 28 H 0.062 0.938 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.077 0.923 40 H 0.120 0.880 41 H 0.155 0.845 42 H 0.063 0.937 43 H 0.059 0.941 44 H 0.019 0.981 45 H 0.022 0.978 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.072 -18.631 -7.934 24.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.261 6.261 3 C 0.310 3.690 4 O -0.389 6.389 5 C 0.060 3.940 6 H 0.126 0.874 7 C -0.162 4.162 8 C -0.104 4.104 9 H 0.099 0.901 10 C -0.214 4.214 11 C -0.175 4.175 12 C -0.003 4.003 13 N -0.832 5.832 14 S 2.691 3.309 15 O -0.949 6.949 16 O -0.952 6.952 17 C -0.733 4.733 18 C -0.140 4.140 19 C -0.005 4.005 20 C -0.562 4.562 21 H 0.075 0.925 22 C -0.144 4.144 23 N -0.535 5.535 24 Si 0.721 3.279 25 H -0.206 1.206 26 H -0.212 1.212 27 H -0.198 1.198 28 H 0.081 0.919 29 H 0.116 0.884 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.117 0.883 39 H 0.095 0.905 40 H 0.138 0.862 41 H 0.172 0.828 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.037 0.963 45 H 0.040 0.960 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.615 -18.677 -7.187 24.205 hybrid contribution -0.915 1.022 0.020 1.372 sum 12.700 -17.655 -7.167 22.899 Atomic orbital electron populations 1.23312 0.75439 1.03393 1.03389 1.86348 1.24130 1.32184 1.83393 1.23216 0.91201 0.82583 0.72026 1.90669 1.67057 1.35591 1.45549 1.20373 0.87259 0.96979 0.89379 0.87350 1.21983 0.97001 1.02817 0.94397 1.21021 0.93731 0.96280 0.99333 0.90094 1.22005 1.00588 0.96647 1.02182 1.22032 1.01862 0.99206 0.94423 1.21523 0.79020 1.01380 0.98398 1.57919 1.19529 1.62874 1.42918 1.05689 0.73404 0.77787 0.74052 1.93496 1.58426 1.57373 1.85621 1.93546 1.68507 1.86405 1.46724 1.30704 1.10800 1.17530 1.14264 1.21434 0.95405 1.00800 0.96330 1.19032 0.95879 0.89416 0.96185 1.21272 1.23369 1.07204 1.04385 0.92489 1.25016 0.96997 0.97094 0.95272 1.69967 1.43283 1.18800 1.21400 0.86569 0.81151 0.79430 0.80743 1.20594 1.21188 1.19780 0.91903 0.88376 0.90648 0.89678 0.89923 0.92422 0.91985 0.92281 0.90166 0.90698 0.88338 0.90512 0.86196 0.82761 0.91865 0.92238 0.96258 0.95978 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.56 101.05 1.07 1.51 16 2 O -0.35 -4.61 10.56 -41.99 -0.44 -5.05 16 3 C 0.47 6.64 4.22 36.00 0.15 6.79 16 4 O -0.50 -8.44 11.40 -26.56 -0.30 -8.74 16 5 C 0.17 1.84 2.85 -68.76 -0.20 1.64 16 6 H 0.11 0.97 6.69 -51.93 -0.35 0.62 16 7 C -0.12 -1.05 4.89 -26.61 -0.13 -1.18 16 8 C -0.09 -0.58 3.19 -90.58 -0.29 -0.87 16 9 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 10 C -0.16 -0.90 8.43 37.16 0.31 -0.58 16 11 C -0.14 -1.02 5.62 -26.61 -0.15 -1.17 16 12 C 0.12 1.15 5.86 -3.71 -0.02 1.13 16 13 N -0.99 -12.27 3.22 -107.71 -0.35 -12.62 16 14 S 2.59 43.51 4.74 -107.50 -0.51 43.00 16 15 O -0.96 -18.17 14.00 -68.08 -0.95 -19.12 16 16 O -0.96 -18.00 16.62 -57.54 -0.96 -18.96 16 17 C -0.60 -10.82 5.72 37.16 0.21 -10.61 16 18 C -0.10 -2.23 5.16 -26.73 -0.14 -2.37 16 19 C 0.03 0.90 4.97 -27.88 -0.14 0.76 16 20 C -0.52 -15.35 9.11 -34.44 -0.31 -15.66 16 21 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 22 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 23 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 24 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 28 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 29 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 1.02 8.13 -51.92 -0.42 0.60 16 31 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.39 4.98 -51.93 -0.26 0.13 16 35 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.10 1.00 7.01 -51.93 -0.36 0.63 16 39 H 0.08 0.60 6.70 -51.93 -0.35 0.25 16 40 H 0.12 1.91 8.14 -51.92 -0.42 1.48 16 41 H 0.15 2.82 5.45 -51.93 -0.28 2.54 16 42 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 43 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 369.68 15.07 5.57 5.57 Total: -1.00 -36.22 369.68 -9.44 -45.66 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -7.48 Total: -1.27 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: 0.27 Total: -19.03 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.39 Total: -39.16 kcal Atomic # 8 Polarization: -49.21 SS G_CDS: -2.66 Total: -51.87 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Atomic # 16 Polarization: 43.51 SS G_CDS: -0.51 Total: 43.00 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.22 -9.44 -45.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356710221.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.258 kcal (2) G-P(sol) polarization free energy of solvation -36.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds