Wall clock time and date at job start Tue Mar 31 2020 17:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34236 * 117.00299 * 2 1 4 4 O 1.20826 * 119.99416 * 0.02562 * 3 2 1 5 5 C 1.50691 * 120.00313 * 179.97438 * 3 2 1 6 6 H 1.08996 * 109.58733 * 352.97289 * 5 3 2 7 7 C 1.53198 * 109.58765 * 113.25069 * 5 3 2 8 8 C 1.53038 * 109.31475 * 174.56276 * 7 5 3 9 9 H 1.09000 * 109.45822 * 178.62516 * 8 7 5 10 10 C 1.53001 * 109.45796 * 58.65830 * 8 7 5 11 11 C 1.53038 * 109.54038 * 298.64097 * 8 7 5 12 12 C 1.53190 * 109.31323 * 61.36168 * 11 8 7 13 13 N 1.46920 * 109.70787 * 232.61389 * 5 3 2 14 14 S 1.65605 * 120.62608 * 6.50916 * 13 5 3 15 15 O 1.42101 * 104.27743 * 29.14348 * 14 13 5 16 16 O 1.42104 * 104.27538 * 156.99828 * 14 13 5 17 17 C 1.81401 * 104.45108 * 273.06954 * 14 13 5 18 18 C 1.53002 * 109.46681 * 180.02562 * 17 14 13 19 19 C 1.53002 * 109.46803 * 180.02562 * 18 17 14 20 20 C 1.50694 * 109.47118 * 179.97438 * 19 18 17 21 21 H 1.08005 * 120.00463 * 359.97438 * 20 19 18 22 22 C 1.37885 * 120.00131 * 179.97438 * 20 19 18 23 23 N 1.31512 * 119.99498 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99990 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47173 * 89.99989 * 24 22 20 26 26 H 1.48502 * 109.46706 * 209.99827 * 24 22 20 27 27 H 1.48504 * 109.47202 * 329.99436 * 24 22 20 28 28 H 1.08995 * 109.47523 * 59.99865 * 1 2 3 29 29 H 1.08997 * 109.47413 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47188 * 299.99850 * 1 2 3 31 31 H 1.09005 * 109.49352 * 54.61511 * 7 5 3 32 32 H 1.09001 * 109.52426 * 294.53695 * 7 5 3 33 33 H 1.09004 * 109.47425 * 59.99852 * 10 8 7 34 34 H 1.09003 * 109.47396 * 300.00032 * 10 8 7 35 35 H 1.08995 * 109.47183 * 179.97438 * 10 8 7 36 36 H 1.08997 * 109.49421 * 181.31532 * 11 8 7 37 37 H 1.09007 * 109.49256 * 301.41059 * 11 8 7 38 38 H 1.09000 * 109.58224 * 185.57787 * 12 11 8 39 39 H 1.08996 * 109.70372 * 65.22612 * 12 11 8 40 40 H 1.08998 * 109.47138 * 299.99986 * 17 14 13 41 41 H 1.08996 * 109.47189 * 60.00308 * 17 14 13 42 42 H 1.08998 * 109.47028 * 299.99692 * 18 17 14 43 43 H 1.08996 * 109.47353 * 60.00047 * 18 17 14 44 44 H 1.09007 * 109.46980 * 299.99685 * 19 18 17 45 45 H 1.08996 * 109.47425 * 59.99728 * 19 18 17 46 46 H 0.97003 * 119.99626 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9844 0.2763 0.1266 7 6 4.0499 1.8705 -1.3254 8 6 5.5655 2.0738 -1.2662 9 1 5.9155 2.4748 -2.2174 10 6 6.2496 0.7322 -0.9959 11 6 5.9067 3.0554 -0.1427 12 6 5.4442 2.4732 1.1966 13 7 4.0166 2.1397 1.0996 14 16 2.9355 2.7280 2.2076 15 8 1.9132 1.7422 2.2572 16 8 3.7284 3.0194 3.3503 17 6 2.3090 4.2577 1.4606 18 6 1.2892 4.9037 2.4007 19 6 0.7602 6.1937 1.7704 20 6 -0.2446 6.8296 2.6960 21 1 -0.4826 6.3605 3.6393 22 6 -0.8603 8.0105 2.3387 23 7 -0.5701 8.5820 1.1903 24 14 -2.1054 8.7992 3.4863 25 1 -1.4078 9.7309 4.4085 26 1 -3.1076 9.5503 2.6884 27 1 -2.7906 7.7433 4.2743 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 3.5604 2.8299 -1.4933 32 1 3.8056 1.1899 -2.1411 33 1 6.0077 0.0332 -1.7966 34 1 5.8992 0.3307 -0.0450 35 1 7.3291 0.8767 -0.9541 36 1 6.9842 3.2177 -0.1163 37 1 5.3997 4.0037 -0.3218 38 1 5.5947 3.2092 1.9864 39 1 6.0153 1.5728 1.4227 40 1 3.1371 4.9467 1.2947 41 1 1.8311 4.0279 0.5083 42 1 0.4610 4.2149 2.5670 43 1 1.7674 5.1336 3.3528 44 1 1.5883 6.8827 1.6038 45 1 0.2820 5.9634 0.8185 46 1 -1.0030 9.4129 0.9390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356710221.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:02 Heat of formation + Delta-G solvation = -186.141446 kcal Electronic energy + Delta-G solvation = -29034.006223 eV Core-core repulsion = 25049.943469 eV Total energy + Delta-G solvation = -3984.062754 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.99432 -39.84157 -38.46503 -37.44020 -37.20709 -36.49867 -34.54864 -34.18276 -32.73441 -29.69978 -28.89702 -28.26326 -25.89335 -25.50774 -24.71658 -22.59992 -22.33162 -20.68153 -19.53770 -19.17513 -18.77338 -18.54284 -17.92596 -17.37006 -17.20809 -16.67361 -16.51299 -16.11613 -15.86862 -15.69196 -15.27929 -15.05219 -14.72649 -14.51259 -14.31030 -14.10486 -14.06019 -13.59096 -13.38051 -13.24245 -13.16526 -13.10130 -13.03772 -12.84850 -12.74458 -12.65845 -12.36732 -12.21054 -12.17960 -12.02100 -11.89778 -11.76104 -11.69248 -11.42738 -11.34547 -11.27989 -11.04821 -10.61143 -10.02764 -8.25440 -6.37624 -0.88950 0.89715 1.36774 1.38821 1.41892 1.50221 1.70117 2.37175 2.64696 3.00223 3.07252 3.40704 3.57577 3.74892 3.80452 3.86190 3.99849 4.05768 4.12796 4.20143 4.31137 4.34076 4.40515 4.53847 4.58105 4.61490 4.73300 4.76609 4.80783 4.90274 4.93599 4.98705 5.00357 5.11396 5.25103 5.30546 5.37882 5.40445 5.45660 5.48205 5.57247 5.60760 5.74589 6.15308 6.59309 6.76802 7.31493 8.86452 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.015094 B = 0.003650 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.616758 B = 7669.418131 C = 8264.452010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.346 6.346 3 C 0.457 3.543 4 O -0.534 6.534 5 C 0.166 3.834 6 H 0.138 0.862 7 C -0.122 4.122 8 C -0.080 4.080 9 H 0.096 0.904 10 C -0.156 4.156 11 C -0.136 4.136 12 C 0.110 3.890 13 N -0.986 5.986 14 S 2.615 3.385 15 O -0.982 6.982 16 O -0.980 6.980 17 C -0.607 4.607 18 C -0.097 4.097 19 C 0.037 3.963 20 C -0.555 4.555 21 H 0.059 0.941 22 C 0.003 3.997 23 N -0.930 5.930 24 Si 0.967 3.033 25 H -0.268 1.268 26 H -0.277 1.277 27 H -0.265 1.265 28 H 0.067 0.933 29 H 0.136 0.864 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.062 0.938 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.136 0.864 41 H 0.150 0.850 42 H 0.055 0.945 43 H 0.063 0.937 44 H 0.003 0.997 45 H -0.004 1.004 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.541 -19.945 -8.244 26.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.261 6.261 3 C 0.302 3.698 4 O -0.426 6.426 5 C 0.060 3.940 6 H 0.155 0.845 7 C -0.161 4.161 8 C -0.099 4.099 9 H 0.114 0.886 10 C -0.213 4.213 11 C -0.175 4.175 12 C -0.013 4.013 13 N -0.827 5.827 14 S 2.713 3.287 15 O -0.972 6.972 16 O -0.971 6.971 17 C -0.737 4.737 18 C -0.136 4.136 19 C -0.001 4.001 20 C -0.593 4.593 21 H 0.077 0.923 22 C -0.196 4.196 23 N -0.569 5.569 24 Si 0.791 3.209 25 H -0.194 1.194 26 H -0.203 1.203 27 H -0.190 1.190 28 H 0.085 0.915 29 H 0.154 0.846 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.122 0.878 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.123 0.877 37 H 0.081 0.919 38 H 0.109 0.891 39 H 0.121 0.879 40 H 0.155 0.845 41 H 0.168 0.832 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.021 0.979 45 H 0.014 0.986 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 15.086 -19.987 -7.497 26.139 hybrid contribution -1.334 1.367 0.037 1.911 sum 13.751 -18.620 -7.460 24.320 Atomic orbital electron populations 1.23513 0.74783 1.05566 1.02279 1.86354 1.24902 1.31818 1.82988 1.23998 0.92618 0.82277 0.70944 1.90654 1.68110 1.36681 1.47108 1.20757 0.85118 0.98211 0.89952 0.84478 1.22063 0.98308 1.02266 0.93480 1.21038 0.92201 0.96943 0.99693 0.88595 1.22001 1.01171 0.95840 1.02270 1.22073 1.03210 0.98748 0.93441 1.21894 0.77184 1.02615 0.99583 1.57611 1.19971 1.62413 1.42731 1.04662 0.73228 0.76691 0.74075 1.93464 1.59997 1.57543 1.86212 1.93516 1.68851 1.86568 1.48139 1.30711 1.10302 1.19518 1.13217 1.21215 0.96401 0.98833 0.97165 1.18892 0.94924 0.91231 0.95078 1.21705 1.24472 1.08108 1.04992 0.92295 1.25986 0.99026 0.97544 0.97002 1.70088 1.44381 1.19308 1.23143 0.85420 0.78394 0.78526 0.78575 1.19361 1.20263 1.18971 0.91460 0.84604 0.93352 0.91436 0.87833 0.91504 0.92413 0.91102 0.87655 0.91902 0.89150 0.87939 0.84535 0.83183 0.92661 0.91851 0.97876 0.98577 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.56 113.37 1.20 1.93 16 2 O -0.35 -8.98 10.56 -48.88 -0.52 -9.50 16 3 C 0.46 12.88 4.22 71.23 0.30 13.18 16 4 O -0.53 -18.63 11.40 29.43 0.34 -18.30 16 5 C 0.17 3.38 2.85 44.23 0.13 3.50 16 6 H 0.14 2.04 6.69 -2.39 -0.02 2.03 16 7 C -0.12 -1.84 4.89 30.67 0.15 -1.69 16 8 C -0.08 -0.84 3.19 -10.77 -0.03 -0.87 16 9 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 10 C -0.16 -1.16 8.43 71.98 0.61 -0.56 16 11 C -0.14 -1.70 5.62 30.67 0.17 -1.52 16 12 C 0.11 1.87 5.86 86.36 0.51 2.37 16 13 N -0.99 -23.21 3.22 -494.69 -1.59 -24.80 16 14 S 2.62 88.48 4.74 -56.49 -0.27 88.21 16 15 O -0.98 -37.83 14.00 -117.57 -1.65 -39.48 16 16 O -0.98 -36.61 16.62 -127.65 -2.12 -38.73 16 17 C -0.61 -22.74 5.72 71.98 0.41 -22.33 16 18 C -0.10 -4.52 5.16 30.60 0.16 -4.36 16 19 C 0.04 2.09 4.97 29.85 0.15 2.24 16 20 C -0.55 -33.46 9.11 25.60 0.23 -33.23 16 21 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 22 C 0.00 0.16 5.46 84.66 0.46 0.62 16 23 N -0.93 -57.81 13.29 21.45 0.28 -57.52 16 24 Si 0.97 45.68 29.54 68.60 2.03 47.71 16 25 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 26 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 27 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 28 H 0.07 1.46 8.13 -2.39 -0.02 1.44 16 29 H 0.14 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.05 1.37 8.13 -2.38 -0.02 1.35 16 31 H 0.07 1.28 8.10 -2.38 -0.02 1.26 16 32 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.06 0.49 4.98 -2.39 -0.01 0.48 16 35 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 38 H 0.09 1.71 7.01 -2.39 -0.02 1.69 16 39 H 0.10 1.26 6.70 -2.39 -0.02 1.24 16 40 H 0.14 4.50 8.14 -2.39 -0.02 4.48 16 41 H 0.15 5.80 5.45 -2.39 -0.01 5.79 16 42 H 0.05 2.61 8.14 -2.39 -0.02 2.59 16 43 H 0.06 2.84 8.14 -2.39 -0.02 2.82 16 44 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 45 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 46 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -80.38 369.68 1.90 -78.47 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 0.96 Total: 14.64 kcal Atomic # 6 Polarization: -45.15 SS G_CDS: 4.44 Total: -40.71 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -1.31 Total: -82.32 kcal Atomic # 8 Polarization: -102.06 SS G_CDS: -3.95 Total: -106.00 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Atomic # 16 Polarization: 88.48 SS G_CDS: -0.27 Total: 88.21 kcal Total: -80.38 1.90 -78.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356710221.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.668 kcal (2) G-P(sol) polarization free energy of solvation -80.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds