Wall clock time and date at job start Tue Mar 31 2020 17:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 110.35060 * 2 1 4 4 O 1.44557 * 110.39435 * 237.56898 * 2 1 3 5 5 C 1.44464 * 105.36525 * 201.19584 * 4 2 1 6 6 C 1.54616 * 104.81807 * 40.16355 * 5 4 2 7 7 C 1.53940 * 110.38877 * 122.29685 * 2 1 3 8 8 C 1.52651 * 110.17435 * 24.03113 * 7 2 1 9 9 N 1.47282 * 108.40291 * 288.13088 * 8 7 2 10 10 S 1.65596 * 121.04528 * 130.45734 * 9 8 7 11 11 O 1.42098 * 104.27579 * 217.13885 * 10 9 8 12 12 O 1.42104 * 104.27691 * 344.99510 * 10 9 8 13 13 C 1.81399 * 104.44929 * 101.06814 * 10 9 8 14 14 C 1.52999 * 109.47075 * 180.02562 * 13 10 9 15 15 C 1.50697 * 109.47320 * 179.97438 * 14 13 10 16 16 H 1.08000 * 119.99768 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00265 * 179.97438 * 15 14 13 18 18 N 1.31518 * 120.00045 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 120.00167 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47331 * 89.99506 * 19 17 15 21 21 H 1.48502 * 109.47502 * 210.00078 * 19 17 15 22 22 H 1.48508 * 109.47057 * 329.99625 * 19 17 15 23 23 C 1.47163 * 117.90769 * 310.43913 * 9 8 7 24 24 C 1.53292 * 108.50449 * 51.05407 * 23 9 8 25 25 H 1.08998 * 109.51255 * 67.09614 * 24 23 9 26 26 C 1.52999 * 109.50770 * 187.19484 * 24 23 9 27 27 O 1.42219 * 110.45155 * 261.25690 * 7 2 1 28 28 H 1.08997 * 109.47610 * 290.48873 * 1 2 3 29 29 H 1.09007 * 109.46699 * 50.48831 * 1 2 3 30 30 H 1.09001 * 109.47198 * 170.48150 * 1 2 3 31 31 H 1.09006 * 110.37148 * 158.99515 * 5 4 2 32 32 H 1.09005 * 110.37379 * 281.21782 * 5 4 2 33 33 H 1.08997 * 110.54868 * 217.51158 * 6 5 4 34 34 H 1.09002 * 110.54567 * 94.71318 * 6 5 4 35 35 H 1.08993 * 109.67984 * 47.85947 * 8 7 2 36 36 H 1.09002 * 109.67513 * 168.40750 * 8 7 2 37 37 H 1.09002 * 109.46807 * 299.99843 * 13 10 9 38 38 H 1.08995 * 109.47234 * 59.99639 * 13 10 9 39 39 H 1.09008 * 109.47115 * 299.99965 * 14 13 10 40 40 H 1.08995 * 109.47529 * 59.99642 * 14 13 10 41 41 H 0.97004 * 119.99855 * 180.02562 * 18 17 15 42 42 H 1.09001 * 109.63334 * 170.75672 * 23 9 8 43 43 H 1.08999 * 109.63257 * 291.34959 * 23 9 8 44 44 H 1.09001 * 109.47560 * 60.00102 * 26 24 23 45 45 H 1.08998 * 109.47289 * 180.02562 * 26 24 23 46 46 H 1.08999 * 109.47273 * 299.99727 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9091 1.0219 0.0000 4 8 2.0338 -0.7266 -1.1436 5 6 3.3845 -1.1014 -0.7944 6 6 3.3082 -1.5138 0.6938 7 6 2.0663 -0.7710 1.2197 8 6 1.0231 -1.7715 1.7105 9 7 -0.0723 -1.0243 2.3516 10 16 -1.6529 -1.3158 1.9529 11 8 -2.2654 -0.0341 1.9884 12 8 -1.5780 -2.0588 0.7439 13 6 -2.2754 -2.3564 3.3020 14 6 -3.7445 -2.6986 3.0459 15 6 -4.2616 -3.5636 4.1663 16 1 -3.6079 -3.8412 4.9799 17 6 -5.5694 -3.9997 4.1533 18 7 -6.0205 -4.7551 5.1308 19 14 -6.7004 -3.5191 2.7464 20 1 -6.6109 -4.5374 1.6692 21 1 -8.0989 -3.4418 3.2396 22 1 -6.2904 -2.1956 2.2117 23 6 0.2821 -0.0107 3.3580 24 6 1.3450 0.9179 2.7599 25 1 0.9072 1.4961 1.9463 26 6 1.8606 1.8683 3.8424 27 8 2.4293 0.1311 2.2575 28 1 -0.3634 0.3597 0.9626 29 1 -0.3633 0.6539 -0.7929 30 1 -0.3634 -1.0135 -0.1699 31 1 3.7148 -1.9422 -1.4045 32 1 4.0583 -0.2539 -0.9209 33 1 4.2020 -1.1897 1.2269 34 1 3.1766 -2.5919 0.7858 35 1 0.6342 -2.3403 0.8660 36 1 1.4766 -2.4500 2.4330 37 1 -1.6918 -3.2758 3.3507 38 1 -2.1864 -1.8191 4.2461 39 1 -4.3285 -1.7794 2.9968 40 1 -3.8332 -3.2361 2.1018 41 1 -6.9406 -5.0622 5.1214 42 1 -0.6030 0.5681 3.6222 43 1 0.6815 -0.5004 4.2461 44 1 2.2999 1.2896 4.6549 45 1 2.6160 2.5286 3.4164 46 1 1.0330 2.4643 4.2270 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000363925615.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:13 Heat of formation + Delta-G solvation = -133.438111 kcal Electronic energy + Delta-G solvation = -29447.152640 eV Core-core repulsion = 25465.375274 eV Total energy + Delta-G solvation = -3981.777366 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.21915 -38.19762 -36.96876 -35.98684 -35.12926 -34.03047 -33.54842 -31.74025 -31.42910 -30.54680 -27.66782 -26.10223 -26.08375 -24.31734 -22.62009 -21.67426 -21.21223 -20.23078 -18.71095 -18.02648 -17.54973 -17.02980 -16.43380 -16.01217 -15.91370 -15.53936 -15.46348 -15.00176 -14.51805 -14.45061 -14.14557 -14.09311 -13.74443 -13.10157 -13.06000 -12.88648 -12.77599 -12.57088 -12.34600 -12.28655 -12.02258 -11.96899 -11.79260 -11.71187 -11.61624 -11.50358 -11.33115 -11.31184 -11.21592 -10.85779 -10.52320 -10.44612 -10.32260 -10.16131 -9.94963 -9.71324 -9.44277 -8.70474 -8.68379 -6.20698 -4.22592 0.46095 2.68732 3.16939 3.23513 3.31008 3.34619 3.79160 4.00122 4.17129 4.23786 4.32005 4.35185 4.45144 4.56146 4.70138 4.84127 4.84860 4.94045 5.02150 5.10325 5.10672 5.26517 5.30265 5.35931 5.37783 5.41437 5.45448 5.45891 5.49937 5.54951 5.63424 5.69747 5.72377 5.82515 5.89589 5.98150 6.19174 6.26939 6.32866 6.60762 6.73871 6.86431 6.99102 7.49322 8.31800 8.79878 9.38595 10.91586 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.019965 B = 0.003700 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.101091 B = 7565.583902 C = 8070.753998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.061 3.939 3 H 0.073 0.927 4 O -0.363 6.363 5 C 0.045 3.955 6 C -0.142 4.142 7 C 0.084 3.916 8 C 0.102 3.898 9 N -1.010 6.010 10 S 2.586 3.414 11 O -0.960 6.960 12 O -0.955 6.955 13 C -0.582 4.582 14 C -0.007 4.007 15 C -0.521 4.521 16 H 0.078 0.922 17 C 0.073 3.927 18 N -0.894 5.894 19 Si 0.868 3.132 20 H -0.270 1.270 21 H -0.281 1.281 22 H -0.262 1.262 23 C 0.088 3.912 24 C 0.071 3.929 25 H 0.070 0.930 26 C -0.144 4.144 27 O -0.358 6.358 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.111 0.889 31 H 0.096 0.904 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.114 0.886 36 H 0.078 0.922 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.032 0.968 40 H 0.029 0.971 41 H 0.267 0.733 42 H 0.102 0.898 43 H 0.080 0.920 44 H 0.067 0.933 45 H 0.066 0.934 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.593 10.556 -6.062 23.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C 0.003 3.997 3 H 0.091 0.909 4 O -0.282 6.282 5 C -0.032 4.032 6 C -0.180 4.180 7 C 0.042 3.958 8 C -0.023 4.023 9 N -0.846 5.846 10 S 2.687 3.313 11 O -0.950 6.950 12 O -0.946 6.946 13 C -0.715 4.715 14 C -0.046 4.046 15 C -0.560 4.560 16 H 0.096 0.904 17 C -0.130 4.130 18 N -0.532 5.532 19 Si 0.694 3.306 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.186 1.186 23 C -0.037 4.037 24 C 0.012 3.988 25 H 0.088 0.912 26 C -0.201 4.201 27 O -0.277 6.277 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.129 0.871 31 H 0.114 0.886 32 H 0.079 0.921 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.132 0.868 36 H 0.096 0.904 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.051 0.949 40 H 0.047 0.953 41 H 0.077 0.923 42 H 0.120 0.880 43 H 0.098 0.902 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 20.061 10.771 -6.904 23.794 hybrid contribution -0.641 -0.123 0.145 0.669 sum 19.420 10.648 -6.759 23.156 Atomic orbital electron populations 1.23219 0.93485 1.06983 1.03476 1.23389 0.95926 0.95487 0.84880 0.90886 1.89232 1.27181 1.74152 1.37679 1.23436 0.85226 1.00161 0.94416 1.22870 0.97682 1.01094 0.96367 1.22620 0.94837 0.90339 0.88018 1.22008 0.87609 0.93698 0.98991 1.58198 1.23373 1.49432 1.53629 1.05988 0.72276 0.75915 0.77112 1.93562 1.74914 1.38878 1.87628 1.93490 1.84552 1.74546 1.41989 1.30306 1.10020 1.14266 1.16935 1.19426 0.87177 0.98545 0.99489 1.20826 0.97219 1.31001 1.06965 0.90380 1.24978 0.97886 0.94272 0.95881 1.69879 1.16667 1.34708 1.31944 0.86938 0.80519 0.80162 0.82939 1.19568 1.20636 1.18642 1.22157 1.00211 0.90179 0.91181 1.22521 0.87657 0.91684 0.96909 0.91229 1.21749 1.02169 0.98473 0.97740 1.87845 1.33573 1.53463 1.52846 0.89923 0.91690 0.87128 0.88561 0.92060 0.88757 0.89001 0.86759 0.90361 0.85449 0.85602 0.94946 0.95318 0.92307 0.88027 0.90169 0.91402 0.91521 0.90433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.15 7.01 37.16 0.26 -2.89 16 2 C 0.06 0.77 2.71 -26.24 -0.07 0.70 16 3 H 0.07 0.87 7.82 -51.93 -0.41 0.47 16 4 O -0.36 -4.72 11.35 -35.23 -0.40 -5.12 16 5 C 0.04 0.40 7.65 38.01 0.29 0.69 16 6 C -0.14 -1.22 6.53 -25.38 -0.17 -1.39 16 7 C 0.08 0.93 1.04 -89.80 -0.09 0.84 16 8 C 0.10 1.22 4.68 -3.79 -0.02 1.20 16 9 N -1.01 -13.14 1.72 -113.32 -0.19 -13.33 16 10 S 2.59 43.35 3.94 -107.50 -0.42 42.93 16 11 O -0.96 -17.93 15.82 -57.54 -0.91 -18.84 16 12 O -0.96 -17.78 13.75 -57.54 -0.79 -18.57 16 13 C -0.58 -10.55 6.12 37.16 0.23 -10.32 16 14 C -0.01 -0.17 4.05 -27.89 -0.11 -0.28 16 15 C -0.52 -14.44 9.66 -34.44 -0.33 -14.77 16 16 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 17 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 18 N -0.89 -26.81 13.96 55.43 0.77 -26.03 16 19 Si 0.87 21.29 27.47 -169.99 -4.67 16.62 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 23 C 0.09 0.96 5.57 -3.53 -0.02 0.94 16 24 C 0.07 0.73 2.87 -26.58 -0.08 0.65 16 25 H 0.07 0.76 5.97 -51.93 -0.31 0.45 16 26 C -0.14 -1.09 9.57 37.16 0.36 -0.74 16 27 O -0.36 -3.93 9.78 -35.23 -0.34 -4.28 16 28 H 0.08 1.21 2.49 -48.80 -0.12 1.09 16 29 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 30 H 0.11 1.82 3.81 -51.93 -0.20 1.62 16 31 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.71 7.99 -51.93 -0.41 0.30 16 34 H 0.09 0.68 7.71 -51.93 -0.40 0.28 16 35 H 0.11 1.47 5.91 -51.93 -0.31 1.16 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.13 2.11 8.14 -51.92 -0.42 1.69 16 38 H 0.13 2.05 8.14 -51.93 -0.42 1.63 16 39 H 0.03 0.76 7.20 -51.92 -0.37 0.39 16 40 H 0.03 0.67 7.57 -51.93 -0.39 0.27 16 41 H 0.27 7.46 8.31 -40.82 -0.34 7.13 16 42 H 0.10 1.07 7.21 -51.93 -0.37 0.70 16 43 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 352.83 15.07 5.32 5.32 Total: -1.00 -33.62 352.83 -8.61 -42.23 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -7.11 Total: 2.46 kcal Atomic # 6 Polarization: -23.53 SS G_CDS: 0.15 Total: -23.38 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.58 Total: -39.37 kcal Atomic # 8 Polarization: -44.36 SS G_CDS: -2.45 Total: -46.80 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Atomic # 16 Polarization: 43.35 SS G_CDS: -0.42 Total: 42.93 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.62 -8.61 -42.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363925615.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.212 kcal (2) G-P(sol) polarization free energy of solvation -33.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds