Wall clock time and date at job start Tue Mar 31 2020 17:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 110.35060 * 2 1 4 4 O 1.44557 * 110.39435 * 237.56898 * 2 1 3 5 5 C 1.44464 * 105.36525 * 201.19584 * 4 2 1 6 6 C 1.54616 * 104.81807 * 40.16355 * 5 4 2 7 7 C 1.53940 * 110.38877 * 122.29685 * 2 1 3 8 8 C 1.52651 * 110.17435 * 24.03113 * 7 2 1 9 9 N 1.47282 * 108.40291 * 288.13088 * 8 7 2 10 10 S 1.65596 * 121.04528 * 130.45734 * 9 8 7 11 11 O 1.42098 * 104.27579 * 217.13885 * 10 9 8 12 12 O 1.42104 * 104.27691 * 344.99510 * 10 9 8 13 13 C 1.81399 * 104.44929 * 101.06814 * 10 9 8 14 14 C 1.52999 * 109.47075 * 180.02562 * 13 10 9 15 15 C 1.50697 * 109.47320 * 179.97438 * 14 13 10 16 16 H 1.08000 * 119.99768 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00265 * 179.97438 * 15 14 13 18 18 N 1.31518 * 120.00045 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 120.00167 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47331 * 89.99506 * 19 17 15 21 21 H 1.48502 * 109.47502 * 210.00078 * 19 17 15 22 22 H 1.48508 * 109.47057 * 329.99625 * 19 17 15 23 23 C 1.47163 * 117.90769 * 310.43913 * 9 8 7 24 24 C 1.53292 * 108.50449 * 51.05407 * 23 9 8 25 25 H 1.08998 * 109.51255 * 67.09614 * 24 23 9 26 26 C 1.52999 * 109.50770 * 187.19484 * 24 23 9 27 27 O 1.42219 * 110.45155 * 261.25690 * 7 2 1 28 28 H 1.08997 * 109.47610 * 290.48873 * 1 2 3 29 29 H 1.09007 * 109.46699 * 50.48831 * 1 2 3 30 30 H 1.09001 * 109.47198 * 170.48150 * 1 2 3 31 31 H 1.09006 * 110.37148 * 158.99515 * 5 4 2 32 32 H 1.09005 * 110.37379 * 281.21782 * 5 4 2 33 33 H 1.08997 * 110.54868 * 217.51158 * 6 5 4 34 34 H 1.09002 * 110.54567 * 94.71318 * 6 5 4 35 35 H 1.08993 * 109.67984 * 47.85947 * 8 7 2 36 36 H 1.09002 * 109.67513 * 168.40750 * 8 7 2 37 37 H 1.09002 * 109.46807 * 299.99843 * 13 10 9 38 38 H 1.08995 * 109.47234 * 59.99639 * 13 10 9 39 39 H 1.09008 * 109.47115 * 299.99965 * 14 13 10 40 40 H 1.08995 * 109.47529 * 59.99642 * 14 13 10 41 41 H 0.97004 * 119.99855 * 180.02562 * 18 17 15 42 42 H 1.09001 * 109.63334 * 170.75672 * 23 9 8 43 43 H 1.08999 * 109.63257 * 291.34959 * 23 9 8 44 44 H 1.09001 * 109.47560 * 60.00102 * 26 24 23 45 45 H 1.08998 * 109.47289 * 180.02562 * 26 24 23 46 46 H 1.08999 * 109.47273 * 299.99727 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9091 1.0219 0.0000 4 8 2.0338 -0.7266 -1.1436 5 6 3.3845 -1.1014 -0.7944 6 6 3.3082 -1.5138 0.6938 7 6 2.0663 -0.7710 1.2197 8 6 1.0231 -1.7715 1.7105 9 7 -0.0723 -1.0243 2.3516 10 16 -1.6529 -1.3158 1.9529 11 8 -2.2654 -0.0341 1.9884 12 8 -1.5780 -2.0588 0.7439 13 6 -2.2754 -2.3564 3.3020 14 6 -3.7445 -2.6986 3.0459 15 6 -4.2616 -3.5636 4.1663 16 1 -3.6079 -3.8412 4.9799 17 6 -5.5694 -3.9997 4.1533 18 7 -6.0205 -4.7551 5.1308 19 14 -6.7004 -3.5191 2.7464 20 1 -6.6109 -4.5374 1.6692 21 1 -8.0989 -3.4418 3.2396 22 1 -6.2904 -2.1956 2.2117 23 6 0.2821 -0.0107 3.3580 24 6 1.3450 0.9179 2.7599 25 1 0.9072 1.4961 1.9463 26 6 1.8606 1.8683 3.8424 27 8 2.4293 0.1311 2.2575 28 1 -0.3634 0.3597 0.9626 29 1 -0.3633 0.6539 -0.7929 30 1 -0.3634 -1.0135 -0.1699 31 1 3.7148 -1.9422 -1.4045 32 1 4.0583 -0.2539 -0.9209 33 1 4.2020 -1.1897 1.2269 34 1 3.1766 -2.5919 0.7858 35 1 0.6342 -2.3403 0.8660 36 1 1.4766 -2.4500 2.4330 37 1 -1.6918 -3.2758 3.3507 38 1 -2.1864 -1.8191 4.2461 39 1 -4.3285 -1.7794 2.9968 40 1 -3.8332 -3.2361 2.1018 41 1 -6.9406 -5.0622 5.1214 42 1 -0.6030 0.5681 3.6222 43 1 0.6815 -0.5004 4.2461 44 1 2.2999 1.2896 4.6549 45 1 2.6160 2.5286 3.4164 46 1 1.0330 2.4643 4.2270 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000363925615.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:12 Heat of formation + Delta-G solvation = -158.234131 kcal Electronic energy + Delta-G solvation = -29448.227876 eV Core-core repulsion = 25465.375274 eV Total energy + Delta-G solvation = -3982.852602 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.08627 -39.05376 -38.36335 -37.33711 -36.16273 -35.92343 -34.35422 -33.55009 -32.50447 -31.36092 -28.51718 -27.95795 -26.97381 -25.27088 -23.46710 -23.10920 -22.38175 -21.17454 -19.97202 -19.41303 -18.77502 -18.41817 -17.57542 -17.22923 -16.83642 -16.59623 -16.48681 -16.31414 -16.11650 -15.35482 -15.29290 -15.16791 -14.92847 -14.82569 -14.22278 -13.92555 -13.88118 -13.69639 -13.42874 -13.32298 -13.22960 -13.13059 -13.10851 -12.93286 -12.84116 -12.69294 -12.49836 -12.32924 -12.28798 -12.10674 -11.99748 -11.85818 -11.73176 -11.45737 -11.25416 -11.09394 -10.86963 -10.78064 -9.67548 -8.39070 -6.45343 -0.88699 1.30252 1.32178 1.41791 1.50150 2.27222 2.37668 2.67138 2.94041 2.95033 3.04977 3.32243 3.44834 3.58686 3.64470 3.82241 3.92740 3.96922 4.05200 4.11296 4.18245 4.23658 4.26649 4.35830 4.45634 4.48946 4.50114 4.63464 4.72207 4.75342 4.78898 4.84868 4.92288 4.95793 4.99791 5.03613 5.05331 5.09225 5.14927 5.29572 5.39555 5.43584 5.75804 6.13613 6.17273 6.60569 7.19320 8.76434 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.019965 B = 0.003700 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.101091 B = 7565.583902 C = 8070.753998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.061 3.939 3 H 0.077 0.923 4 O -0.390 6.390 5 C 0.038 3.962 6 C -0.136 4.136 7 C 0.084 3.916 8 C 0.095 3.905 9 N -1.002 6.002 10 S 2.611 3.389 11 O -0.980 6.980 12 O -0.975 6.975 13 C -0.590 4.590 14 C -0.017 4.017 15 C -0.529 4.529 16 H 0.050 0.950 17 C 0.016 3.984 18 N -0.938 5.938 19 Si 0.922 3.078 20 H -0.260 1.260 21 H -0.272 1.272 22 H -0.250 1.250 23 C 0.078 3.922 24 C 0.068 3.932 25 H 0.059 0.941 26 C -0.139 4.139 27 O -0.357 6.357 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.093 0.907 31 H 0.115 0.885 32 H 0.073 0.927 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.032 0.968 40 H 0.030 0.970 41 H 0.271 0.729 42 H 0.103 0.897 43 H 0.102 0.898 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.541 11.452 -6.520 26.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C 0.003 3.997 3 H 0.095 0.905 4 O -0.310 6.310 5 C -0.038 4.038 6 C -0.174 4.174 7 C 0.042 3.958 8 C -0.030 4.030 9 N -0.841 5.841 10 S 2.710 3.290 11 O -0.970 6.970 12 O -0.966 6.966 13 C -0.721 4.721 14 C -0.056 4.056 15 C -0.568 4.568 16 H 0.068 0.932 17 C -0.183 4.183 18 N -0.578 5.578 19 Si 0.745 3.255 20 H -0.185 1.185 21 H -0.197 1.197 22 H -0.174 1.174 23 C -0.047 4.047 24 C 0.009 3.991 25 H 0.077 0.923 26 C -0.197 4.197 27 O -0.276 6.276 28 H 0.100 0.900 29 H 0.077 0.923 30 H 0.112 0.888 31 H 0.133 0.867 32 H 0.091 0.909 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.158 0.842 38 H 0.159 0.841 39 H 0.050 0.950 40 H 0.049 0.951 41 H 0.080 0.920 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.094 0.906 45 H 0.090 0.910 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 22.008 11.661 -7.354 25.969 hybrid contribution -1.128 -0.388 0.316 1.234 sum 20.880 11.274 -7.037 24.751 Atomic orbital electron populations 1.23207 0.95542 1.05627 1.03186 1.23347 0.94370 0.96098 0.85851 0.90492 1.89200 1.29316 1.74329 1.38114 1.23704 0.83605 1.01399 0.95066 1.22918 0.96951 1.01640 0.95894 1.22655 0.95637 0.90131 0.87420 1.22240 0.87250 0.94249 0.99272 1.57870 1.22020 1.49889 1.54277 1.05033 0.73004 0.74901 0.76026 1.93532 1.76278 1.39517 1.87683 1.93471 1.85265 1.75020 1.42798 1.30322 1.06944 1.15863 1.18980 1.19376 0.90642 0.97649 0.97904 1.21146 0.97050 1.31210 1.07400 0.93164 1.25850 0.99698 0.94345 0.98409 1.70003 1.17378 1.36328 1.34053 0.86062 0.78785 0.80597 0.80058 1.18466 1.19678 1.17383 1.22484 1.00749 0.90040 0.91380 1.22636 0.87455 0.91676 0.97331 0.92315 1.21759 1.02748 0.98115 0.97040 1.87862 1.33735 1.53387 1.52588 0.90044 0.92261 0.88840 0.86725 0.90864 0.87198 0.87625 0.87973 0.87938 0.84211 0.84105 0.94968 0.95135 0.92023 0.87893 0.87963 0.90635 0.90972 0.89288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -6.39 7.01 71.98 0.50 -5.88 16 2 C 0.06 1.48 2.71 30.91 0.08 1.56 16 3 H 0.08 1.76 7.82 -2.39 -0.02 1.74 16 4 O -0.39 -9.66 11.35 -148.98 -1.69 -11.35 16 5 C 0.04 0.59 7.65 72.53 0.55 1.15 16 6 C -0.14 -1.94 6.53 31.47 0.21 -1.73 16 7 C 0.08 1.68 1.04 -10.27 -0.01 1.67 16 8 C 0.09 2.07 4.68 86.11 0.40 2.47 16 9 N -1.00 -24.54 1.72 -512.45 -0.88 -25.42 16 10 S 2.61 85.67 3.94 -56.49 -0.22 85.45 16 11 O -0.98 -36.09 15.82 -127.65 -2.02 -38.11 16 12 O -0.98 -36.08 13.75 -127.65 -1.75 -37.83 16 13 C -0.59 -20.99 6.12 71.98 0.44 -20.55 16 14 C -0.02 -0.78 4.05 29.85 0.12 -0.66 16 15 C -0.53 -29.76 9.66 25.60 0.25 -29.51 16 16 H 0.05 3.01 7.99 -2.91 -0.02 2.99 16 17 C 0.02 0.91 5.47 84.65 0.46 1.38 16 18 N -0.94 -57.31 13.96 21.45 0.30 -57.01 16 19 Si 0.92 43.58 27.47 68.60 1.88 45.46 16 20 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 21 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 22 H -0.25 -11.24 6.54 99.48 0.65 -10.59 16 23 C 0.08 1.54 5.57 86.35 0.48 2.02 16 24 C 0.07 1.24 2.87 30.69 0.09 1.33 16 25 H 0.06 1.20 5.97 -2.39 -0.01 1.19 16 26 C -0.14 -1.74 9.57 71.98 0.69 -1.05 16 27 O -0.36 -6.86 9.78 -148.98 -1.46 -8.32 16 28 H 0.08 2.35 2.49 -4.38 -0.01 2.34 16 29 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 30 H 0.09 3.08 3.81 -2.39 -0.01 3.07 16 31 H 0.11 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.11 1.25 7.99 -2.39 -0.02 1.23 16 34 H 0.11 1.21 7.71 -2.39 -0.02 1.19 16 35 H 0.10 2.52 5.91 -2.39 -0.01 2.51 16 36 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.14 4.54 8.14 -2.39 -0.02 4.52 16 38 H 0.14 4.48 8.14 -2.39 -0.02 4.46 16 39 H 0.03 1.49 7.20 -2.38 -0.02 1.48 16 40 H 0.03 1.40 7.57 -2.39 -0.02 1.38 16 41 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 42 H 0.10 2.00 7.21 -2.39 -0.02 1.99 16 43 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -73.15 352.83 -0.65 -73.80 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: 0.92 Total: 21.13 kcal Atomic # 6 Polarization: -52.08 SS G_CDS: 4.27 Total: -47.81 kcal Atomic # 7 Polarization: -81.85 SS G_CDS: -0.58 Total: -82.43 kcal Atomic # 8 Polarization: -88.68 SS G_CDS: -6.92 Total: -95.61 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.88 Total: 45.46 kcal Atomic # 16 Polarization: 85.67 SS G_CDS: -0.22 Total: 85.45 kcal Total: -73.15 -0.65 -73.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363925615.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.436 kcal (2) G-P(sol) polarization free energy of solvation -73.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds