Wall clock time and date at job start Tue Mar 31 2020 17:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53082 * 1 3 3 H 1.08817 * 110.07748 * 2 1 4 4 O 1.44289 * 108.55272 * 120.33324 * 2 1 3 5 5 C 1.44455 * 107.43051 * 138.69074 * 4 2 1 6 6 C 1.55266 * 102.46220 * 320.55986 * 5 4 2 7 7 C 1.53720 * 110.61230 * 238.08933 * 2 1 3 8 8 C 1.52628 * 110.11790 * 136.36754 * 7 2 1 9 9 N 1.46858 * 109.96590 * 271.76120 * 8 7 2 10 10 S 1.65437 * 121.65294 * 129.64251 * 9 8 7 11 11 O 1.42099 * 104.27860 * 153.95208 * 10 9 8 12 12 O 1.42101 * 104.27705 * 26.09497 * 10 9 8 13 13 C 1.81396 * 104.45168 * 270.02457 * 10 9 8 14 14 C 1.52996 * 109.47320 * 179.97438 * 13 10 9 15 15 C 1.50702 * 109.47159 * 179.97438 * 14 13 10 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48501 * 109.47188 * 90.00793 * 19 17 15 21 21 H 1.48501 * 109.47085 * 210.00372 * 19 17 15 22 22 H 1.48498 * 109.47634 * 330.00608 * 19 17 15 23 23 C 1.47300 * 117.04136 * 309.67018 * 9 8 7 24 24 C 1.53441 * 106.95432 * 57.61006 * 23 9 8 25 25 H 1.09135 * 108.71578 * 68.18284 * 24 23 9 26 26 C 1.53375 * 108.91719 * 186.34769 * 24 23 9 27 27 O 1.40768 * 112.54829 * 8.20164 * 7 2 1 28 28 H 1.09004 * 109.46710 * 181.91665 * 1 2 3 29 29 H 1.08998 * 109.47101 * 301.91361 * 1 2 3 30 30 H 1.08995 * 109.46721 * 61.91196 * 1 2 3 31 31 H 1.08828 * 110.83917 * 78.73217 * 5 4 2 32 32 H 1.08845 * 110.81191 * 202.44695 * 5 4 2 33 33 H 1.08574 * 111.37141 * 286.33330 * 6 5 4 34 34 H 1.08552 * 111.37999 * 160.34624 * 6 5 4 35 35 H 1.09299 * 109.34268 * 151.49825 * 8 7 2 36 36 H 1.09220 * 109.47679 * 32.28102 * 8 7 2 37 37 H 1.09004 * 109.46947 * 59.99845 * 13 10 9 38 38 H 1.09000 * 109.47486 * 300.00272 * 13 10 9 39 39 H 1.09004 * 109.47066 * 60.00127 * 14 13 10 40 40 H 1.08994 * 109.47405 * 299.99958 * 14 13 10 41 41 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 42 42 H 1.08753 * 109.88104 * 176.80491 * 23 9 8 43 43 H 1.08768 * 109.86477 * 298.43206 * 23 9 8 44 44 H 1.08997 * 109.47371 * 60.00444 * 26 24 23 45 45 H 1.09007 * 109.47101 * 180.02562 * 26 24 23 46 46 H 1.08999 * 109.47278 * 299.99684 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5308 0.0000 0.0000 3 1 1.9044 1.0220 0.0000 4 8 1.9899 -0.6908 1.1806 5 6 3.1091 -1.5169 0.7909 6 6 2.6602 -2.0577 -0.5936 7 6 2.0720 -0.7605 -1.2214 8 6 3.2277 0.0122 -1.8512 9 7 2.7122 0.9668 -2.8410 10 16 3.1616 2.5589 -2.8277 11 8 3.0039 2.9789 -4.1760 12 8 4.4392 2.5572 -2.2056 13 6 1.9358 3.3665 -1.7620 14 6 2.2474 4.8614 -1.6682 15 6 1.2287 5.5324 -0.7833 16 1 0.4382 4.9507 -0.3325 17 6 1.3093 6.8879 -0.5442 18 7 2.2721 7.5963 -1.0929 19 14 0.0510 7.7182 0.5588 20 1 0.5315 7.6937 1.9637 21 1 -0.1360 9.1258 0.1242 22 1 -1.2427 6.9953 0.4655 23 6 1.7740 0.4448 -3.8495 24 6 0.5916 -0.1669 -3.0865 25 1 0.0367 0.6362 -2.5984 26 6 -0.3376 -0.8657 -4.0867 27 8 1.0576 -1.1096 -2.1328 28 1 -0.3633 -1.0271 0.0344 29 1 -0.3633 0.5433 0.8723 30 1 -0.3632 0.4838 -0.9066 31 1 4.0153 -0.9217 0.6968 32 1 3.2504 -2.3342 1.4958 33 1 1.8888 -2.8149 -0.4914 34 1 3.5068 -2.4121 -1.1733 35 1 3.9081 -0.6893 -2.3407 36 1 3.7737 0.5495 -1.0727 37 1 1.9730 2.9248 -0.7661 38 1 0.9403 3.2282 -2.1838 39 1 2.2105 5.3034 -2.6640 40 1 3.2428 4.9994 -1.2462 41 1 2.3286 8.5500 -0.9249 42 1 1.4242 1.2558 -4.4841 43 1 2.2630 -0.3206 -4.4480 44 1 0.2118 -1.6513 -4.6055 45 1 -1.1818 -1.3035 -3.5538 46 1 -0.7037 -0.1388 -4.8117 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000363925619.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:23 Heat of formation + Delta-G solvation = -156.801584 kcal Electronic energy + Delta-G solvation = -29417.640459 eV Core-core repulsion = 25434.849977 eV Total energy + Delta-G solvation = -3982.790482 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.96234 -38.24835 -36.79410 -35.63309 -35.07568 -33.95335 -33.59530 -31.60918 -31.20433 -30.56627 -27.71468 -25.95307 -25.61735 -24.35507 -22.60607 -21.89968 -21.50037 -20.04867 -18.75509 -17.75530 -17.10238 -16.77777 -16.63189 -16.08605 -15.90491 -15.53876 -15.38179 -14.94476 -14.59250 -14.19476 -14.12842 -13.83338 -13.48405 -13.28324 -12.98545 -12.58433 -12.55243 -12.50966 -12.37813 -12.17823 -11.94658 -11.86389 -11.83315 -11.74809 -11.56081 -11.42173 -11.32273 -11.11336 -11.07099 -10.99491 -10.74595 -10.45211 -10.39722 -10.14925 -9.79337 -9.63515 -9.28253 -8.78455 -8.53561 -6.15765 -4.21556 0.58187 2.76953 3.16068 3.24575 3.30969 3.33446 3.68727 4.03722 4.15818 4.23567 4.34769 4.46700 4.53763 4.62040 4.73589 4.83328 4.93425 5.00187 5.06745 5.08601 5.19461 5.25502 5.27123 5.42037 5.43779 5.46874 5.49427 5.52188 5.57050 5.61757 5.71292 5.72522 5.79308 5.87555 5.96268 6.01609 6.21229 6.36255 6.40773 6.70807 7.23551 7.28746 7.29177 7.77057 8.12794 8.81627 9.43587 10.95258 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012415 B = 0.004385 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.712068 B = 6384.148496 C = 7019.446940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.050 3.950 3 H 0.076 0.924 4 O -0.369 6.369 5 C 0.042 3.958 6 C -0.142 4.142 7 C 0.090 3.910 8 C 0.102 3.898 9 N -1.010 6.010 10 S 2.587 3.413 11 O -0.959 6.959 12 O -0.960 6.960 13 C -0.589 4.589 14 C 0.030 3.970 15 C -0.520 4.520 16 H 0.062 0.938 17 C 0.059 3.941 18 N -0.890 5.890 19 Si 0.900 3.100 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.272 1.272 23 C 0.089 3.911 24 C 0.073 3.927 25 H 0.068 0.932 26 C -0.143 4.143 27 O -0.355 6.355 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.034 0.966 40 H 0.033 0.967 41 H 0.265 0.735 42 H 0.105 0.895 43 H 0.081 0.919 44 H 0.064 0.936 45 H 0.067 0.933 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.265 -21.288 -2.255 21.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.008 4.008 3 H 0.094 0.906 4 O -0.288 6.288 5 C -0.034 4.034 6 C -0.180 4.180 7 C 0.048 3.952 8 C -0.025 4.025 9 N -0.845 5.845 10 S 2.686 3.314 11 O -0.949 6.949 12 O -0.950 6.950 13 C -0.723 4.723 14 C -0.009 4.009 15 C -0.559 4.559 16 H 0.080 0.920 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.727 3.273 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.037 4.037 24 C 0.014 3.986 25 H 0.086 0.914 26 C -0.201 4.201 27 O -0.273 6.273 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.116 0.884 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.119 0.881 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.052 0.948 40 H 0.051 0.949 41 H 0.075 0.925 42 H 0.124 0.876 43 H 0.099 0.901 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.563 -20.910 -2.569 21.125 hybrid contribution -0.922 0.792 0.788 1.449 sum -2.486 -20.118 -1.780 20.349 Atomic orbital electron populations 1.21878 0.93082 1.02945 1.02427 1.23423 0.96615 0.95953 0.84825 0.90618 1.89034 1.48055 1.61060 1.30680 1.23597 0.90308 0.94399 0.95143 1.23447 1.01453 0.96760 0.96370 1.22608 0.87882 0.95628 0.89072 1.22021 0.95039 0.93110 0.92289 1.58174 1.60178 1.26434 1.39756 1.05893 0.76863 0.72433 0.76185 1.93540 1.87364 1.80294 1.33732 1.93542 1.37790 1.84962 1.78748 1.30552 1.15484 1.12431 1.13791 1.18962 0.98968 0.83635 0.99350 1.20976 1.12177 0.93091 1.29702 0.92008 1.25059 0.95892 0.97413 0.96014 1.69954 1.31865 1.07542 1.43459 0.86471 0.81431 0.78746 0.80673 1.20407 1.20974 1.19724 1.22243 0.90016 1.00767 0.90628 1.22536 0.94087 0.92279 0.89708 0.91394 1.21841 0.98970 1.01359 0.97933 1.86785 1.54111 1.40476 1.45949 0.91572 0.91818 0.91214 0.91410 0.88351 0.88854 0.89175 0.90175 0.88096 0.86355 0.86182 0.94822 0.94850 0.92488 0.87643 0.90053 0.91647 0.91430 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.67 37.20 0.32 -1.43 16 2 C 0.05 0.63 3.63 -26.31 -0.10 0.53 16 3 H 0.08 1.04 6.26 -52.03 -0.33 0.71 16 4 O -0.37 -4.77 11.11 -35.23 -0.39 -5.17 16 5 C 0.04 0.39 7.54 38.36 0.29 0.68 16 6 C -0.14 -1.25 6.31 -24.12 -0.15 -1.40 16 7 C 0.09 1.00 1.03 -89.02 -0.09 0.90 16 8 C 0.10 1.21 4.85 -4.04 -0.02 1.19 16 9 N -1.01 -13.72 3.22 -113.45 -0.36 -14.09 16 10 S 2.59 46.48 5.45 -107.50 -0.59 45.89 16 11 O -0.96 -19.47 16.76 -57.54 -0.96 -20.44 16 12 O -0.96 -19.70 16.86 -57.54 -0.97 -20.67 16 13 C -0.59 -11.17 6.11 37.16 0.23 -10.94 16 14 C 0.03 0.76 4.98 -27.88 -0.14 0.62 16 15 C -0.52 -14.21 9.11 -34.44 -0.31 -14.52 16 16 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 19 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 23 C 0.09 1.00 5.85 -3.38 -0.02 0.98 16 24 C 0.07 0.73 3.14 -26.31 -0.08 0.65 16 25 H 0.07 0.71 6.15 -51.85 -0.32 0.39 16 26 C -0.14 -1.10 9.56 37.35 0.36 -0.74 16 27 O -0.35 -3.85 8.33 -34.49 -0.29 -4.14 16 28 H 0.07 0.76 8.12 -51.93 -0.42 0.33 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.79 5.46 -51.93 -0.28 0.51 16 31 H 0.07 0.60 7.76 -52.03 -0.40 0.19 16 32 H 0.10 0.72 8.13 -52.02 -0.42 0.30 16 33 H 0.09 0.82 8.09 -52.17 -0.42 0.39 16 34 H 0.09 0.63 7.48 -52.18 -0.39 0.24 16 35 H 0.08 0.82 7.56 -51.76 -0.39 0.43 16 36 H 0.10 1.25 6.56 -51.80 -0.34 0.91 16 37 H 0.12 2.06 6.83 -51.92 -0.35 1.70 16 38 H 0.12 2.02 8.14 -51.92 -0.42 1.59 16 39 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.11 1.19 7.10 -52.07 -0.37 0.82 16 43 H 0.08 0.81 8.12 -52.06 -0.42 0.39 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 46 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 368.75 15.07 5.56 5.56 Total: -1.00 -34.39 368.75 -9.47 -43.86 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -7.37 Total: 0.56 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: 0.18 Total: -21.91 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.37 Total: -39.64 kcal Atomic # 8 Polarization: -47.80 SS G_CDS: -2.61 Total: -50.41 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 46.48 SS G_CDS: -0.59 Total: 45.89 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.39 -9.47 -43.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363925619.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.938 kcal (2) G-P(sol) polarization free energy of solvation -34.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds