Wall clock time and date at job start Tue Mar 31 2020 17:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53082 * 1 3 3 H 1.08817 * 110.07748 * 2 1 4 4 O 1.44289 * 108.55272 * 120.33324 * 2 1 3 5 5 C 1.44455 * 107.43051 * 138.69074 * 4 2 1 6 6 C 1.55266 * 102.46220 * 320.55986 * 5 4 2 7 7 C 1.53720 * 110.61230 * 238.08933 * 2 1 3 8 8 C 1.52628 * 110.11790 * 136.36754 * 7 2 1 9 9 N 1.46858 * 109.96590 * 271.76120 * 8 7 2 10 10 S 1.65437 * 121.65294 * 129.64251 * 9 8 7 11 11 O 1.42099 * 104.27860 * 153.95208 * 10 9 8 12 12 O 1.42101 * 104.27705 * 26.09497 * 10 9 8 13 13 C 1.81396 * 104.45168 * 270.02457 * 10 9 8 14 14 C 1.52996 * 109.47320 * 179.97438 * 13 10 9 15 15 C 1.50702 * 109.47159 * 179.97438 * 14 13 10 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48501 * 109.47188 * 90.00793 * 19 17 15 21 21 H 1.48501 * 109.47085 * 210.00372 * 19 17 15 22 22 H 1.48498 * 109.47634 * 330.00608 * 19 17 15 23 23 C 1.47300 * 117.04136 * 309.67018 * 9 8 7 24 24 C 1.53441 * 106.95432 * 57.61006 * 23 9 8 25 25 H 1.09135 * 108.71578 * 68.18284 * 24 23 9 26 26 C 1.53375 * 108.91719 * 186.34769 * 24 23 9 27 27 O 1.40768 * 112.54829 * 8.20164 * 7 2 1 28 28 H 1.09004 * 109.46710 * 181.91665 * 1 2 3 29 29 H 1.08998 * 109.47101 * 301.91361 * 1 2 3 30 30 H 1.08995 * 109.46721 * 61.91196 * 1 2 3 31 31 H 1.08828 * 110.83917 * 78.73217 * 5 4 2 32 32 H 1.08845 * 110.81191 * 202.44695 * 5 4 2 33 33 H 1.08574 * 111.37141 * 286.33330 * 6 5 4 34 34 H 1.08552 * 111.37999 * 160.34624 * 6 5 4 35 35 H 1.09299 * 109.34268 * 151.49825 * 8 7 2 36 36 H 1.09220 * 109.47679 * 32.28102 * 8 7 2 37 37 H 1.09004 * 109.46947 * 59.99845 * 13 10 9 38 38 H 1.09000 * 109.47486 * 300.00272 * 13 10 9 39 39 H 1.09004 * 109.47066 * 60.00127 * 14 13 10 40 40 H 1.08994 * 109.47405 * 299.99958 * 14 13 10 41 41 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 42 42 H 1.08753 * 109.88104 * 176.80491 * 23 9 8 43 43 H 1.08768 * 109.86477 * 298.43206 * 23 9 8 44 44 H 1.08997 * 109.47371 * 60.00444 * 26 24 23 45 45 H 1.09007 * 109.47101 * 180.02562 * 26 24 23 46 46 H 1.08999 * 109.47278 * 299.99684 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5308 0.0000 0.0000 3 1 1.9044 1.0220 0.0000 4 8 1.9899 -0.6908 1.1806 5 6 3.1091 -1.5169 0.7909 6 6 2.6602 -2.0577 -0.5936 7 6 2.0720 -0.7605 -1.2214 8 6 3.2277 0.0122 -1.8512 9 7 2.7122 0.9668 -2.8410 10 16 3.1616 2.5589 -2.8277 11 8 3.0039 2.9789 -4.1760 12 8 4.4392 2.5572 -2.2056 13 6 1.9358 3.3665 -1.7620 14 6 2.2474 4.8614 -1.6682 15 6 1.2287 5.5324 -0.7833 16 1 0.4382 4.9507 -0.3325 17 6 1.3093 6.8879 -0.5442 18 7 2.2721 7.5963 -1.0929 19 14 0.0510 7.7182 0.5588 20 1 0.5315 7.6937 1.9637 21 1 -0.1360 9.1258 0.1242 22 1 -1.2427 6.9953 0.4655 23 6 1.7740 0.4448 -3.8495 24 6 0.5916 -0.1669 -3.0865 25 1 0.0367 0.6362 -2.5984 26 6 -0.3376 -0.8657 -4.0867 27 8 1.0576 -1.1096 -2.1328 28 1 -0.3633 -1.0271 0.0344 29 1 -0.3633 0.5433 0.8723 30 1 -0.3632 0.4838 -0.9066 31 1 4.0153 -0.9217 0.6968 32 1 3.2504 -2.3342 1.4958 33 1 1.8888 -2.8149 -0.4914 34 1 3.5068 -2.4121 -1.1733 35 1 3.9081 -0.6893 -2.3407 36 1 3.7737 0.5495 -1.0727 37 1 1.9730 2.9248 -0.7661 38 1 0.9403 3.2282 -2.1838 39 1 2.2105 5.3034 -2.6640 40 1 3.2428 4.9994 -1.2462 41 1 2.3286 8.5500 -0.9249 42 1 1.4242 1.2558 -4.4841 43 1 2.2630 -0.3206 -4.4480 44 1 0.2118 -1.6513 -4.6055 45 1 -1.1818 -1.3035 -3.5538 46 1 -0.7037 -0.1388 -4.8117 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000363925619.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:22 Heat of formation + Delta-G solvation = -182.284707 kcal Electronic energy + Delta-G solvation = -29418.745490 eV Core-core repulsion = 25434.849977 eV Total energy + Delta-G solvation = -3983.895513 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.82697 -39.12320 -38.34498 -37.17482 -36.11922 -35.93388 -34.41760 -33.20801 -32.41884 -31.38163 -28.56343 -27.67673 -26.78690 -25.23786 -23.79298 -23.20034 -22.55644 -20.96755 -20.06748 -19.24136 -18.46001 -18.08906 -17.66263 -17.22472 -17.04926 -16.77155 -16.57171 -16.47565 -15.98939 -15.30297 -15.13176 -14.93040 -14.73635 -14.50832 -14.14756 -13.79880 -13.76241 -13.52786 -13.39496 -13.34003 -13.23301 -13.14809 -12.98213 -12.94878 -12.85102 -12.80034 -12.64193 -12.36067 -12.24323 -12.22313 -12.08204 -11.92541 -11.84228 -11.60852 -11.07458 -10.94705 -10.67883 -10.55703 -9.82267 -8.29004 -6.42976 -0.88286 1.38996 1.40419 1.50255 1.51903 2.34762 2.36074 2.69869 2.88661 2.97575 3.04732 3.17628 3.51583 3.58494 3.67284 3.85555 3.94504 3.98426 4.05844 4.13582 4.20017 4.24161 4.33134 4.37273 4.46070 4.58406 4.66857 4.68620 4.76224 4.80045 4.85934 4.93060 4.95635 5.01398 5.09080 5.12303 5.19046 5.21106 5.29794 5.30802 5.41243 5.64757 5.86326 6.02209 6.46232 6.69863 7.27373 8.83296 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012415 B = 0.004385 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.712068 B = 6384.148496 C = 7019.446940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.042 3.958 3 H 0.057 0.943 4 O -0.392 6.392 5 C 0.034 3.966 6 C -0.131 4.131 7 C 0.092 3.908 8 C 0.094 3.906 9 N -1.001 6.001 10 S 2.612 3.388 11 O -0.984 6.984 12 O -0.989 6.989 13 C -0.589 4.589 14 C 0.025 3.975 15 C -0.538 4.538 16 H 0.074 0.926 17 C 0.000 4.000 18 N -0.933 5.933 19 Si 0.971 3.029 20 H -0.272 1.272 21 H -0.281 1.281 22 H -0.258 1.258 23 C 0.082 3.918 24 C 0.069 3.931 25 H 0.063 0.937 26 C -0.139 4.139 27 O -0.353 6.353 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.120 0.880 33 H 0.097 0.903 34 H 0.113 0.887 35 H 0.105 0.895 36 H 0.092 0.908 37 H 0.132 0.868 38 H 0.142 0.858 39 H 0.009 0.991 40 H 0.005 0.995 41 H 0.268 0.732 42 H 0.104 0.896 43 H 0.102 0.898 44 H 0.073 0.927 45 H 0.071 0.929 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.543 -23.638 -2.181 24.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.016 4.016 3 H 0.075 0.925 4 O -0.312 6.312 5 C -0.042 4.042 6 C -0.169 4.169 7 C 0.050 3.950 8 C -0.032 4.032 9 N -0.839 5.839 10 S 2.710 3.290 11 O -0.974 6.974 12 O -0.979 6.979 13 C -0.721 4.721 14 C -0.014 4.014 15 C -0.577 4.577 16 H 0.092 0.908 17 C -0.199 4.199 18 N -0.572 5.572 19 Si 0.795 3.205 20 H -0.197 1.197 21 H -0.206 1.206 22 H -0.182 1.182 23 C -0.043 4.043 24 C 0.011 3.989 25 H 0.081 0.919 26 C -0.196 4.196 27 O -0.271 6.271 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.138 0.862 33 H 0.116 0.884 34 H 0.131 0.869 35 H 0.123 0.877 36 H 0.110 0.890 37 H 0.150 0.850 38 H 0.160 0.840 39 H 0.027 0.973 40 H 0.024 0.976 41 H 0.077 0.923 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.853 -23.263 -2.489 23.569 hybrid contribution -0.489 1.434 0.752 1.691 sum -3.342 -21.829 -1.737 22.152 Atomic orbital electron populations 1.21861 0.92865 1.03169 1.02215 1.23456 0.96908 0.95420 0.85807 0.92548 1.89006 1.49292 1.61644 1.31253 1.23867 0.89421 0.94666 0.96267 1.23455 1.02191 0.95483 0.95758 1.22593 0.87513 0.96461 0.88438 1.22301 0.95943 0.92967 0.91971 1.57763 1.60718 1.24661 1.40769 1.04842 0.75875 0.73299 0.74982 1.93500 1.87510 1.81608 1.34785 1.93497 1.39329 1.85934 1.79134 1.30455 1.17478 1.08514 1.15640 1.18791 0.97361 0.87823 0.97455 1.21461 1.12706 0.93751 1.29775 0.90833 1.26071 0.97978 0.98329 0.97528 1.70094 1.33985 1.07956 1.45201 0.85353 0.79106 0.77578 0.78500 1.19723 1.20622 1.18166 1.22561 0.90130 1.01223 0.90385 1.22666 0.93811 0.92529 0.89933 0.91932 1.21847 0.98538 1.01715 0.97512 1.86814 1.53978 1.40473 1.45851 0.91006 0.92750 0.90791 0.91165 0.86221 0.88404 0.86876 0.87699 0.88975 0.84980 0.84010 0.97261 0.97648 0.92321 0.87754 0.88001 0.90784 0.91015 0.89265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 8.67 72.01 0.62 -2.68 16 2 C 0.04 1.02 3.63 30.86 0.11 1.14 16 3 H 0.06 1.55 6.26 -2.48 -0.02 1.53 16 4 O -0.39 -9.75 11.11 -148.98 -1.66 -11.41 16 5 C 0.03 0.56 7.54 72.76 0.55 1.11 16 6 C -0.13 -1.91 6.31 32.29 0.20 -1.70 16 7 C 0.09 1.84 1.03 -9.76 -0.01 1.83 16 8 C 0.09 2.06 4.85 86.19 0.42 2.48 16 9 N -1.00 -25.85 3.22 -512.84 -1.65 -27.50 16 10 S 2.61 94.52 5.45 -56.49 -0.31 94.22 16 11 O -0.98 -40.28 16.76 -127.65 -2.14 -42.42 16 12 O -0.99 -41.31 16.86 -127.65 -2.15 -43.46 16 13 C -0.59 -22.66 6.11 71.98 0.44 -22.22 16 14 C 0.02 1.29 4.98 29.85 0.15 1.44 16 15 C -0.54 -29.87 9.11 25.60 0.23 -29.64 16 16 H 0.07 3.80 7.74 -2.91 -0.02 3.77 16 17 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 18 N -0.93 -56.68 13.29 21.45 0.28 -56.40 16 19 Si 0.97 43.41 29.54 68.60 2.03 45.44 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 22 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 23 C 0.08 1.66 5.85 86.37 0.51 2.17 16 24 C 0.07 1.23 3.14 30.87 0.10 1.33 16 25 H 0.06 1.19 6.15 -2.32 -0.01 1.17 16 26 C -0.14 -1.72 9.56 72.11 0.69 -1.03 16 27 O -0.35 -6.70 8.33 -146.34 -1.22 -7.92 16 28 H 0.07 1.53 8.12 -2.39 -0.02 1.51 16 29 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.07 1.59 5.46 -2.39 -0.01 1.57 16 31 H 0.07 1.12 7.76 -2.48 -0.02 1.10 16 32 H 0.12 1.44 8.13 -2.47 -0.02 1.42 16 33 H 0.10 1.39 8.09 -2.61 -0.02 1.37 16 34 H 0.11 1.14 7.48 -2.62 -0.02 1.12 16 35 H 0.10 1.83 7.56 -2.23 -0.02 1.81 16 36 H 0.09 2.22 6.56 -2.27 -0.01 2.20 16 37 H 0.13 4.66 6.83 -2.39 -0.02 4.65 16 38 H 0.14 4.73 8.14 -2.39 -0.02 4.71 16 39 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 40 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 41 H 0.27 15.21 8.31 -92.70 -0.77 14.44 16 42 H 0.10 2.17 7.10 -2.52 -0.02 2.16 16 43 H 0.10 1.71 8.12 -2.51 -0.02 1.68 16 44 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 46 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -75.42 368.75 -1.38 -76.79 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.96 Total: 18.01 kcal Atomic # 6 Polarization: -49.81 SS G_CDS: 4.47 Total: -45.34 kcal Atomic # 7 Polarization: -82.54 SS G_CDS: -1.36 Total: -83.90 kcal Atomic # 8 Polarization: -98.05 SS G_CDS: -7.17 Total: -105.21 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: 94.52 SS G_CDS: -0.31 Total: 94.22 kcal Total: -75.42 -1.38 -76.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363925619.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.491 kcal (2) G-P(sol) polarization free energy of solvation -75.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds