Wall clock time and date at job start Tue Mar 31 2020 17:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.51080 * 2 1 4 4 C 1.53286 * 109.51219 * 239.89893 * 2 1 3 5 5 N 1.47149 * 108.43128 * 187.74192 * 4 2 1 6 6 S 1.65600 * 120.99711 * 230.53812 * 5 4 2 7 7 O 1.42097 * 104.27619 * 206.07096 * 6 5 4 8 8 O 1.42100 * 104.27391 * 333.92622 * 6 5 4 9 9 C 1.81399 * 104.45145 * 89.99903 * 6 5 4 10 10 C 1.52997 * 109.47174 * 180.02562 * 9 6 5 11 11 C 1.50702 * 109.47152 * 180.02562 * 10 9 6 12 12 H 1.08000 * 119.99845 * 359.97438 * 11 10 9 13 13 C 1.37869 * 120.00042 * 179.97438 * 11 10 9 14 14 N 1.31523 * 120.00145 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00234 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47002 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47063 * 119.99760 * 15 13 11 18 18 H 1.48499 * 109.47392 * 240.00223 * 15 13 11 19 19 C 1.47179 * 118.01254 * 50.55616 * 5 4 2 20 20 C 1.53184 * 108.37464 * 309.60810 * 19 5 4 21 21 C 1.53053 * 109.50413 * 172.32537 * 20 19 5 22 22 C 1.53115 * 109.16578 * 176.66360 * 21 20 19 23 23 O 1.42909 * 109.40493 * 302.53835 * 22 21 20 24 24 C 1.42901 * 114.12914 * 61.19397 * 23 22 21 25 25 C 1.53073 * 109.45209 * 292.04005 * 20 19 5 26 26 O 1.42848 * 109.43696 * 52.14301 * 20 19 5 27 27 H 1.09007 * 109.46997 * 180.10425 * 1 2 3 28 28 H 1.09003 * 109.46951 * 300.09946 * 1 2 3 29 29 H 1.08998 * 109.47643 * 60.10426 * 1 2 3 30 30 H 1.08999 * 109.67630 * 307.48175 * 4 2 1 31 31 H 1.09008 * 109.67103 * 68.01105 * 4 2 1 32 32 H 1.09004 * 109.46895 * 299.99896 * 9 6 5 33 33 H 1.09005 * 109.47292 * 59.99756 * 9 6 5 34 34 H 1.09004 * 109.46827 * 299.99574 * 10 9 6 35 35 H 1.08999 * 109.47277 * 59.99897 * 10 9 6 36 36 H 0.96995 * 119.99924 * 179.97438 * 14 13 11 37 37 H 1.08994 * 109.68647 * 189.88800 * 19 5 4 38 38 H 1.09002 * 109.68589 * 69.32306 * 19 5 4 39 39 H 1.09001 * 109.51945 * 296.56552 * 21 20 19 40 40 H 1.08991 * 109.52152 * 56.75453 * 21 20 19 41 41 H 1.09001 * 109.47979 * 182.56169 * 22 21 20 42 42 H 1.09000 * 109.48801 * 62.51801 * 22 21 20 43 43 H 1.09003 * 109.48806 * 178.82096 * 24 23 22 44 44 H 1.08997 * 109.50044 * 58.77476 * 24 23 22 45 45 H 1.08997 * 109.52494 * 303.19268 * 25 20 19 46 46 H 1.09007 * 109.52651 * 63.31615 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0420 -0.7246 -1.2500 5 7 3.5012 -0.8755 -1.1353 6 16 4.5056 -0.4175 -2.3698 7 8 5.6596 -1.2294 -2.2021 8 8 3.6990 -0.5224 -3.5349 9 6 4.8926 1.3194 -2.0177 10 6 5.8250 1.8640 -3.1016 11 6 6.1471 3.3068 -2.8087 12 1 5.7282 3.7874 -1.9369 13 6 6.9764 4.0132 -3.6537 14 7 7.4861 3.4282 -4.7156 15 14 7.3750 5.8019 -3.2911 16 1 6.6811 6.2213 -2.0469 17 1 8.8415 5.9564 -3.1155 18 1 6.9198 6.6496 -4.4221 19 6 4.0415 -1.4461 0.1091 20 6 3.4304 -0.6894 1.2925 21 6 3.8234 -1.3817 2.5997 22 6 3.2790 -0.5729 3.7803 23 8 3.7857 0.7617 3.7155 24 6 3.4068 1.4738 2.5360 25 6 3.9568 0.7479 1.3051 26 8 2.0076 -0.6770 1.1652 27 1 -0.3633 -1.0277 0.0019 28 1 -0.3633 0.5154 0.8891 29 1 -0.3634 0.5122 -0.8909 30 1 1.5759 -1.7073 -1.3213 31 1 1.8023 -0.1390 -2.1376 32 1 3.9712 1.9017 -2.0054 33 1 5.3819 1.3930 -1.0464 34 1 6.7465 1.2818 -3.1142 35 1 5.3354 1.7905 -4.0726 36 1 8.0692 3.9253 -5.3102 37 1 5.1257 -1.3357 0.1233 38 1 3.7785 -2.5020 0.1734 39 1 3.4012 -2.3864 2.6209 40 1 4.9095 -1.4405 2.6684 41 1 3.5946 -1.0366 4.7149 42 1 2.1901 -0.5509 3.7347 43 1 3.8143 2.4841 2.5744 44 1 2.3197 1.5224 2.4737 45 1 5.0460 0.7366 1.3454 46 1 3.6312 1.2632 0.4014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000370030368.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:07 Heat of formation + Delta-G solvation = -167.829115 kcal Electronic energy + Delta-G solvation = -29260.835279 eV Core-core repulsion = 25277.566607 eV Total energy + Delta-G solvation = -3983.268672 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.82702 -38.15021 -36.77943 -35.58261 -34.86243 -34.17902 -33.95828 -31.45472 -31.15909 -30.94033 -27.75453 -25.84953 -25.50896 -24.05671 -23.12254 -21.87845 -21.29490 -19.72429 -18.66966 -17.68824 -16.87341 -16.64644 -16.56599 -16.28358 -15.84950 -15.52888 -15.25448 -15.00215 -14.72657 -14.61870 -14.38216 -14.23848 -13.49700 -13.02275 -12.99778 -12.73954 -12.60728 -12.45040 -12.32606 -12.26858 -12.02057 -11.82449 -11.77058 -11.68710 -11.57745 -11.45454 -11.23607 -11.13661 -11.00919 -10.64298 -10.55933 -10.46501 -10.35253 -10.21367 -9.80367 -9.69363 -9.23879 -8.71141 -8.55143 -6.16947 -4.22868 0.61871 2.84360 3.22249 3.29847 3.32747 3.34965 3.73462 4.18904 4.24406 4.33440 4.41097 4.48907 4.58570 4.64982 4.74951 4.80317 4.97543 5.02783 5.07560 5.12036 5.18363 5.20336 5.36952 5.39985 5.46142 5.48943 5.52009 5.53874 5.54665 5.60019 5.67022 5.72737 5.78071 5.85331 5.87364 5.97990 6.09172 6.39534 6.44857 7.01605 7.04363 7.23299 7.28948 7.75795 8.11738 8.80585 9.42397 10.94087 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012464 B = 0.004259 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.003012 B = 6573.132065 C = 7572.779664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.068 3.932 3 H 0.069 0.931 4 C 0.095 3.905 5 N -1.008 6.008 6 S 2.586 3.414 7 O -0.961 6.961 8 O -0.961 6.961 9 C -0.590 4.590 10 C 0.029 3.971 11 C -0.519 4.519 12 H 0.062 0.938 13 C 0.059 3.941 14 N -0.890 5.890 15 Si 0.899 3.101 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.104 3.896 20 C 0.107 3.893 21 C -0.140 4.140 22 C 0.065 3.935 23 O -0.383 6.383 24 C 0.068 3.932 25 C -0.192 4.192 26 O -0.363 6.363 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.033 0.967 35 H 0.033 0.967 36 H 0.265 0.735 37 H 0.100 0.900 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.058 0.942 43 H 0.095 0.905 44 H 0.054 0.946 45 H 0.088 0.912 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.899 -8.499 15.060 21.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.009 3.991 3 H 0.087 0.913 4 C -0.031 4.031 5 N -0.844 5.844 6 S 2.686 3.314 7 O -0.951 6.951 8 O -0.951 6.951 9 C -0.724 4.724 10 C -0.010 4.010 11 C -0.559 4.559 12 H 0.080 0.920 13 C -0.144 4.144 14 N -0.528 5.528 15 Si 0.727 3.273 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.022 4.022 20 C 0.066 3.934 21 C -0.178 4.178 22 C -0.011 4.011 23 O -0.302 6.302 24 C -0.008 4.008 25 C -0.229 4.229 26 O -0.282 6.282 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.117 0.883 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.075 0.925 37 H 0.118 0.882 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.108 0.892 41 H 0.111 0.889 42 H 0.076 0.924 43 H 0.114 0.886 44 H 0.072 0.928 45 H 0.106 0.894 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.526 -9.103 14.451 21.180 hybrid contribution 0.238 1.476 -0.042 1.496 sum -12.288 -7.627 14.409 20.415 Atomic orbital electron populations 1.21733 0.92275 1.03184 1.02867 1.22543 0.95285 0.95966 0.85343 0.91337 1.22077 0.79875 1.02204 0.98940 1.58135 1.16284 1.78097 1.31900 1.05894 0.73437 0.78792 0.73297 1.93540 1.49875 1.66323 1.85369 1.93539 1.68463 1.87170 1.45968 1.30563 1.10549 1.20148 1.11112 1.18965 0.92961 0.98104 0.90945 1.21006 1.29668 0.94953 1.10247 0.91995 1.25063 0.95637 0.98801 0.94915 1.69964 1.32214 1.36947 1.13661 0.86422 0.78282 0.84288 0.78357 1.19633 1.20755 1.20771 1.21993 0.99453 0.97973 0.82782 1.21742 0.81861 0.94827 0.94983 1.22160 1.02460 1.00090 0.93067 1.22498 0.98363 0.82572 0.97716 1.87925 1.75471 1.25766 1.41020 1.22475 0.99106 0.95420 0.83833 1.22923 1.03047 0.96516 1.00435 1.87917 1.19877 1.77261 1.43173 0.91587 0.91594 0.90577 0.90479 0.88269 0.86329 0.86206 0.94861 0.94869 0.92537 0.88226 0.90391 0.89755 0.89207 0.88937 0.92409 0.88645 0.92767 0.89366 0.89646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.57 37.16 0.36 -0.75 16 2 C 0.07 0.68 3.02 -26.58 -0.08 0.60 16 3 H 0.07 0.68 6.20 -51.93 -0.32 0.36 16 4 C 0.09 1.09 5.79 -3.54 -0.02 1.07 16 5 N -1.01 -13.71 2.86 -113.11 -0.32 -14.03 16 6 S 2.59 46.37 5.42 -107.50 -0.58 45.79 16 7 O -0.96 -19.76 16.82 -57.54 -0.97 -20.73 16 8 O -0.96 -19.69 16.81 -57.54 -0.97 -20.66 16 9 C -0.59 -10.97 5.47 37.16 0.20 -10.77 16 10 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 11 C -0.52 -14.03 9.11 -34.44 -0.31 -14.34 16 12 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 15 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 16 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 C 0.10 1.24 5.16 -3.58 -0.02 1.22 16 20 C 0.11 1.13 0.68 -90.46 -0.06 1.07 16 21 C -0.14 -1.24 5.15 -26.64 -0.14 -1.37 16 22 C 0.07 0.59 6.70 37.22 0.25 0.84 16 23 O -0.38 -4.40 10.76 -35.23 -0.38 -4.78 16 24 C 0.07 0.73 6.70 37.22 0.25 0.98 16 25 C -0.19 -2.13 4.19 -26.63 -0.11 -2.24 16 26 O -0.36 -3.87 8.87 -35.23 -0.31 -4.18 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.10 1.14 7.23 -51.92 -0.38 0.76 16 32 H 0.12 1.95 8.14 -51.92 -0.42 1.53 16 33 H 0.12 2.00 7.57 -51.92 -0.39 1.61 16 34 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.10 1.21 7.22 -51.93 -0.38 0.83 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.53 7.83 -51.93 -0.41 0.12 16 43 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.05 0.55 7.83 -51.93 -0.41 0.14 16 45 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.09 0.97 5.07 -51.93 -0.26 0.70 16 LS Contribution 368.50 15.07 5.55 5.55 Total: -1.00 -34.21 368.50 -9.77 -43.97 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -7.58 Total: 0.16 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: 0.08 Total: -21.58 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.41 Total: -39.44 kcal Atomic # 8 Polarization: -47.72 SS G_CDS: -2.63 Total: -50.35 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 46.37 SS G_CDS: -0.58 Total: 45.79 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.21 -9.77 -43.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000370030368.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.858 kcal (2) G-P(sol) polarization free energy of solvation -34.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds