Wall clock time and date at job start Tue Mar 31 2020 17:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.51080 * 2 1 4 4 C 1.53286 * 109.51219 * 239.89893 * 2 1 3 5 5 N 1.47149 * 108.43128 * 187.74192 * 4 2 1 6 6 S 1.65600 * 120.99711 * 230.53812 * 5 4 2 7 7 O 1.42097 * 104.27619 * 206.07096 * 6 5 4 8 8 O 1.42100 * 104.27391 * 333.92622 * 6 5 4 9 9 C 1.81399 * 104.45145 * 89.99903 * 6 5 4 10 10 C 1.52997 * 109.47174 * 180.02562 * 9 6 5 11 11 C 1.50702 * 109.47152 * 180.02562 * 10 9 6 12 12 H 1.08000 * 119.99845 * 359.97438 * 11 10 9 13 13 C 1.37869 * 120.00042 * 179.97438 * 11 10 9 14 14 N 1.31523 * 120.00145 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00234 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47002 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47063 * 119.99760 * 15 13 11 18 18 H 1.48499 * 109.47392 * 240.00223 * 15 13 11 19 19 C 1.47179 * 118.01254 * 50.55616 * 5 4 2 20 20 C 1.53184 * 108.37464 * 309.60810 * 19 5 4 21 21 C 1.53053 * 109.50413 * 172.32537 * 20 19 5 22 22 C 1.53115 * 109.16578 * 176.66360 * 21 20 19 23 23 O 1.42909 * 109.40493 * 302.53835 * 22 21 20 24 24 C 1.42901 * 114.12914 * 61.19397 * 23 22 21 25 25 C 1.53073 * 109.45209 * 292.04005 * 20 19 5 26 26 O 1.42848 * 109.43696 * 52.14301 * 20 19 5 27 27 H 1.09007 * 109.46997 * 180.10425 * 1 2 3 28 28 H 1.09003 * 109.46951 * 300.09946 * 1 2 3 29 29 H 1.08998 * 109.47643 * 60.10426 * 1 2 3 30 30 H 1.08999 * 109.67630 * 307.48175 * 4 2 1 31 31 H 1.09008 * 109.67103 * 68.01105 * 4 2 1 32 32 H 1.09004 * 109.46895 * 299.99896 * 9 6 5 33 33 H 1.09005 * 109.47292 * 59.99756 * 9 6 5 34 34 H 1.09004 * 109.46827 * 299.99574 * 10 9 6 35 35 H 1.08999 * 109.47277 * 59.99897 * 10 9 6 36 36 H 0.96995 * 119.99924 * 179.97438 * 14 13 11 37 37 H 1.08994 * 109.68647 * 189.88800 * 19 5 4 38 38 H 1.09002 * 109.68589 * 69.32306 * 19 5 4 39 39 H 1.09001 * 109.51945 * 296.56552 * 21 20 19 40 40 H 1.08991 * 109.52152 * 56.75453 * 21 20 19 41 41 H 1.09001 * 109.47979 * 182.56169 * 22 21 20 42 42 H 1.09000 * 109.48801 * 62.51801 * 22 21 20 43 43 H 1.09003 * 109.48806 * 178.82096 * 24 23 22 44 44 H 1.08997 * 109.50044 * 58.77476 * 24 23 22 45 45 H 1.08997 * 109.52494 * 303.19268 * 25 20 19 46 46 H 1.09007 * 109.52651 * 63.31615 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0420 -0.7246 -1.2500 5 7 3.5012 -0.8755 -1.1353 6 16 4.5056 -0.4175 -2.3698 7 8 5.6596 -1.2294 -2.2021 8 8 3.6990 -0.5224 -3.5349 9 6 4.8926 1.3194 -2.0177 10 6 5.8250 1.8640 -3.1016 11 6 6.1471 3.3068 -2.8087 12 1 5.7282 3.7874 -1.9369 13 6 6.9764 4.0132 -3.6537 14 7 7.4861 3.4282 -4.7156 15 14 7.3750 5.8019 -3.2911 16 1 6.6811 6.2213 -2.0469 17 1 8.8415 5.9564 -3.1155 18 1 6.9198 6.6496 -4.4221 19 6 4.0415 -1.4461 0.1091 20 6 3.4304 -0.6894 1.2925 21 6 3.8234 -1.3817 2.5997 22 6 3.2790 -0.5729 3.7803 23 8 3.7857 0.7617 3.7155 24 6 3.4068 1.4738 2.5360 25 6 3.9568 0.7479 1.3051 26 8 2.0076 -0.6770 1.1652 27 1 -0.3633 -1.0277 0.0019 28 1 -0.3633 0.5154 0.8891 29 1 -0.3634 0.5122 -0.8909 30 1 1.5759 -1.7073 -1.3213 31 1 1.8023 -0.1390 -2.1376 32 1 3.9712 1.9017 -2.0054 33 1 5.3819 1.3930 -1.0464 34 1 6.7465 1.2818 -3.1142 35 1 5.3354 1.7905 -4.0726 36 1 8.0692 3.9253 -5.3102 37 1 5.1257 -1.3357 0.1233 38 1 3.7785 -2.5020 0.1734 39 1 3.4012 -2.3864 2.6209 40 1 4.9095 -1.4405 2.6684 41 1 3.5946 -1.0366 4.7149 42 1 2.1901 -0.5509 3.7347 43 1 3.8143 2.4841 2.5744 44 1 2.3197 1.5224 2.4737 45 1 5.0460 0.7366 1.3454 46 1 3.6312 1.2632 0.4014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000370030368.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:06 Heat of formation + Delta-G solvation = -192.820451 kcal Electronic energy + Delta-G solvation = -29261.918985 eV Core-core repulsion = 25277.566607 eV Total energy + Delta-G solvation = -3984.352378 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.66369 -38.97754 -38.33348 -37.13626 -35.96075 -35.85035 -34.97718 -33.19734 -32.11168 -31.72612 -28.61690 -27.66286 -26.57857 -24.84436 -24.07480 -23.46072 -22.29457 -20.59196 -19.98283 -19.17501 -18.42438 -17.74081 -17.59800 -17.28018 -16.97880 -16.80681 -16.55273 -16.28691 -15.79207 -15.72281 -15.38080 -15.19948 -15.10693 -14.49700 -13.88884 -13.78662 -13.73726 -13.59281 -13.36245 -13.30583 -13.27701 -13.18879 -12.98067 -12.95115 -12.80280 -12.76245 -12.56882 -12.36352 -12.29040 -12.16393 -11.97811 -11.84575 -11.50756 -11.34019 -11.09979 -10.91184 -10.67179 -10.51535 -9.73458 -8.27610 -6.41551 -0.84344 1.40376 1.40689 1.53635 1.56722 2.36572 2.57385 2.74684 2.98359 3.02137 3.06453 3.46593 3.56204 3.72502 3.73641 3.90623 3.99011 4.01710 4.03697 4.17420 4.20176 4.30065 4.33592 4.48430 4.56190 4.61962 4.67010 4.70860 4.76607 4.81052 4.85340 4.88674 4.90584 5.01110 5.09020 5.13494 5.20924 5.22800 5.26420 5.34447 5.43141 5.66502 6.03508 6.20807 6.29132 6.72027 7.29002 8.84907 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012464 B = 0.004259 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.003012 B = 6573.132065 C = 7572.779664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.067 3.933 3 H 0.070 0.930 4 C 0.086 3.914 5 N -0.998 5.998 6 S 2.607 3.393 7 O -0.991 6.991 8 O -0.989 6.989 9 C -0.586 4.586 10 C 0.023 3.977 11 C -0.535 4.535 12 H 0.076 0.924 13 C -0.002 4.002 14 N -0.934 5.934 15 Si 0.972 3.028 16 H -0.255 1.255 17 H -0.279 1.279 18 H -0.278 1.278 19 C 0.096 3.904 20 C 0.110 3.890 21 C -0.138 4.138 22 C 0.063 3.937 23 O -0.401 6.401 24 C 0.070 3.930 25 C -0.196 4.196 26 O -0.363 6.363 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.142 0.858 33 H 0.139 0.861 34 H 0.005 0.995 35 H 0.006 0.994 36 H 0.267 0.733 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.111 0.889 42 H 0.058 0.942 43 H 0.097 0.903 44 H 0.059 0.941 45 H 0.082 0.918 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.379 -8.022 17.234 23.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.008 3.992 3 H 0.088 0.912 4 C -0.038 4.038 5 N -0.837 5.837 6 S 2.706 3.294 7 O -0.981 6.981 8 O -0.980 6.980 9 C -0.718 4.718 10 C -0.016 4.016 11 C -0.574 4.574 12 H 0.095 0.905 13 C -0.201 4.201 14 N -0.574 5.574 15 Si 0.796 3.204 16 H -0.179 1.179 17 H -0.205 1.205 18 H -0.204 1.204 19 C -0.029 4.029 20 C 0.069 3.931 21 C -0.176 4.176 22 C -0.013 4.013 23 O -0.320 6.320 24 C -0.007 4.007 25 C -0.234 4.234 26 O -0.282 6.282 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.117 0.883 32 H 0.160 0.840 33 H 0.157 0.843 34 H 0.023 0.977 35 H 0.025 0.975 36 H 0.076 0.924 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.118 0.882 40 H 0.112 0.888 41 H 0.129 0.871 42 H 0.076 0.924 43 H 0.115 0.885 44 H 0.077 0.923 45 H 0.100 0.900 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.014 -8.622 16.634 23.397 hybrid contribution 0.646 1.238 -0.686 1.556 sum -13.369 -7.384 15.948 22.081 Atomic orbital electron populations 1.21741 0.90378 1.03761 1.03778 1.22641 0.96687 0.95606 0.84251 0.91246 1.22376 0.78186 1.03263 1.00023 1.57731 1.16799 1.77580 1.31549 1.04963 0.72979 0.78026 0.73395 1.93493 1.51727 1.66880 1.85997 1.93495 1.69012 1.87328 1.48132 1.30435 1.10349 1.21355 1.09682 1.18804 0.92983 0.97791 0.91981 1.21498 1.29397 0.95929 1.10532 0.90536 1.26086 0.95531 1.03801 0.94637 1.70107 1.33250 1.39054 1.14992 0.85291 0.78081 0.78278 0.78774 1.17855 1.20484 1.20382 1.22255 0.99446 0.98945 0.82268 1.21735 0.81842 0.94428 0.95075 1.22193 1.02843 1.00643 0.91912 1.22645 0.98385 0.81657 0.98611 1.87904 1.75875 1.26931 1.41271 1.22473 0.99334 0.95446 0.83402 1.22961 1.02773 0.97063 1.00616 1.87934 1.19691 1.77287 1.43289 0.91192 0.90947 0.89429 0.89318 0.88301 0.83970 0.84252 0.97674 0.97530 0.92398 0.88685 0.89017 0.88230 0.88837 0.87114 0.92378 0.88454 0.92273 0.89956 0.90015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.57 71.98 0.69 -1.09 16 2 C 0.07 1.18 3.02 30.69 0.09 1.28 16 3 H 0.07 1.23 6.20 -2.39 -0.01 1.21 16 4 C 0.09 1.84 5.79 86.35 0.50 2.34 16 5 N -1.00 -25.97 2.86 -511.77 -1.46 -27.43 16 6 S 2.61 94.00 5.42 -56.49 -0.31 93.69 16 7 O -0.99 -41.46 16.82 -127.65 -2.15 -43.61 16 8 O -0.99 -41.05 16.81 -127.65 -2.15 -43.20 16 9 C -0.59 -21.73 5.47 71.98 0.39 -21.34 16 10 C 0.02 1.20 4.98 29.85 0.15 1.35 16 11 C -0.53 -29.03 9.11 25.60 0.23 -28.80 16 12 H 0.08 3.82 7.74 -2.91 -0.02 3.80 16 13 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 14 N -0.93 -56.35 13.29 21.45 0.28 -56.07 16 15 Si 0.97 42.73 29.54 68.60 2.03 44.76 16 16 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 17 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 18 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 19 C 0.10 2.14 5.16 86.31 0.45 2.59 16 20 C 0.11 2.11 0.68 -10.69 -0.01 2.10 16 21 C -0.14 -2.11 5.15 30.65 0.16 -1.95 16 22 C 0.06 0.99 6.70 72.02 0.48 1.48 16 23 O -0.40 -8.42 10.76 -148.98 -1.60 -10.02 16 24 C 0.07 1.36 6.70 72.02 0.48 1.84 16 25 C -0.20 -4.04 4.19 30.66 0.13 -3.91 16 26 O -0.36 -6.79 8.87 -148.98 -1.32 -8.12 16 27 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.10 2.13 7.23 -2.38 -0.02 2.11 16 32 H 0.14 4.53 8.14 -2.39 -0.02 4.51 16 33 H 0.14 4.57 7.57 -2.39 -0.02 4.55 16 34 H 0.00 0.28 8.14 -2.38 -0.02 0.26 16 35 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 37 H 0.09 2.22 7.22 -2.39 -0.02 2.20 16 38 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.06 0.91 7.83 -2.39 -0.02 0.89 16 43 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.06 1.08 7.83 -2.39 -0.02 1.06 16 45 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.08 1.71 5.07 -2.38 -0.01 1.70 16 Total: -1.00 -74.24 368.50 -1.51 -75.74 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 0.96 Total: 18.02 kcal Atomic # 6 Polarization: -47.98 SS G_CDS: 4.21 Total: -43.77 kcal Atomic # 7 Polarization: -82.32 SS G_CDS: -1.18 Total: -83.50 kcal Atomic # 8 Polarization: -97.73 SS G_CDS: -7.22 Total: -104.94 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Atomic # 16 Polarization: 94.00 SS G_CDS: -0.31 Total: 93.69 kcal Total: -74.24 -1.51 -75.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000370030368.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.076 kcal (2) G-P(sol) polarization free energy of solvation -74.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds