Wall clock time and date at job start Tue Mar 31 2020 17:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.95969 * 2 1 4 4 O 1.43432 * 109.86032 * 238.97330 * 2 1 3 5 5 C 1.43710 * 109.93147 * 242.74197 * 4 2 1 6 6 C 1.55067 * 105.21228 * 335.67907 * 5 4 2 7 7 C 1.53643 * 109.86169 * 121.03063 * 2 1 3 8 8 C 1.52448 * 110.69452 * 257.81296 * 7 2 1 9 9 N 1.47318 * 108.39781 * 174.24129 * 8 7 2 10 10 S 1.65601 * 121.06560 * 130.68503 * 9 8 7 11 11 O 1.42096 * 104.27856 * 333.92522 * 10 9 8 12 12 O 1.42101 * 104.27519 * 206.06800 * 10 9 8 13 13 C 1.81399 * 104.45044 * 89.99903 * 10 9 8 14 14 C 1.52996 * 109.47374 * 179.97438 * 13 10 9 15 15 C 1.53002 * 109.47346 * 179.97438 * 14 13 10 16 16 C 1.50706 * 109.46931 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00193 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99398 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00338 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99424 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46845 * 180.02562 * 20 18 16 22 22 H 1.48503 * 109.47399 * 299.99813 * 20 18 16 23 23 H 1.48498 * 109.47295 * 60.00420 * 20 18 16 24 24 C 1.47165 * 117.86445 * 310.95684 * 9 8 7 25 25 C 1.52847 * 108.78091 * 50.85492 * 24 9 8 26 26 O 1.41975 * 111.03126 * 21.91069 * 7 2 1 27 27 H 1.09000 * 109.46932 * 298.96947 * 1 2 3 28 28 H 1.08999 * 109.47046 * 58.96584 * 1 2 3 29 29 H 1.09000 * 109.47405 * 178.97191 * 1 2 3 30 30 H 1.09005 * 110.29173 * 216.75125 * 5 4 2 31 31 H 1.08997 * 110.30174 * 94.61487 * 5 4 2 32 32 H 1.08994 * 111.14136 * 277.87361 * 6 5 4 33 33 H 1.08999 * 111.13570 * 153.67346 * 6 5 4 34 34 H 1.08993 * 109.68098 * 54.50767 * 8 7 2 35 35 H 1.09005 * 109.67641 * 293.96858 * 8 7 2 36 36 H 1.09000 * 109.47234 * 59.99844 * 13 10 9 37 37 H 1.09004 * 109.46978 * 299.99806 * 13 10 9 38 38 H 1.09004 * 109.47368 * 59.99868 * 14 13 10 39 39 H 1.09004 * 109.47108 * 299.99969 * 14 13 10 40 40 H 1.09000 * 109.46986 * 60.00254 * 15 14 13 41 41 H 1.08992 * 109.46974 * 300.00318 * 15 14 13 42 42 H 0.97000 * 119.99706 * 359.97438 * 19 18 16 43 43 H 1.08998 * 109.61830 * 170.63270 * 24 9 8 44 44 H 1.08999 * 109.61812 * 291.18917 * 24 9 8 45 45 H 1.09001 * 109.57891 * 187.28704 * 25 24 9 46 46 H 1.09005 * 109.41122 * 67.21272 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9021 1.0245 0.0000 4 8 2.0173 -0.6953 -1.1560 5 6 2.7657 -1.8536 -0.7517 6 6 3.2575 -1.5392 0.6849 7 6 2.0520 -0.7449 1.2382 8 6 2.5182 0.2411 2.3034 9 7 2.8759 -0.5175 3.5145 10 16 4.3173 -0.2615 4.2885 11 8 5.1802 0.2260 3.2702 12 8 4.5841 -1.4915 4.9481 13 6 3.9571 1.0433 5.4962 14 6 5.2261 1.3726 6.2850 15 6 4.9224 2.4736 7.3031 16 6 6.1723 2.7975 8.0805 17 1 7.0913 2.2710 7.8691 18 6 6.1423 3.7659 9.0615 19 7 5.0230 4.4066 9.3191 20 14 7.6916 4.1678 10.0245 21 1 7.3966 5.2355 11.0136 22 1 8.1623 2.9518 10.7351 23 1 8.7475 4.6355 9.0909 24 6 1.9138 -1.5143 4.0109 25 6 1.5119 -2.4290 2.8542 26 8 1.0688 -1.6310 1.7519 27 1 -0.3633 0.4977 0.8991 28 1 -0.3633 0.5298 -0.8806 29 1 -0.3634 -1.0275 -0.0184 30 1 3.6153 -2.0060 -1.4173 31 1 2.1249 -2.7353 -0.7473 32 1 4.1579 -0.9251 0.6666 33 1 3.4198 -2.4546 1.2539 34 1 1.7147 0.9410 2.5325 35 1 3.3894 0.7874 1.9417 36 1 3.1824 0.7000 6.1818 37 1 3.6113 1.9358 4.9746 38 1 6.0011 1.7158 5.5996 39 1 5.5715 0.4800 6.8066 40 1 4.1473 2.1308 7.9886 41 1 4.5772 3.3659 6.7812 42 1 4.2187 4.1980 8.8188 43 1 2.3753 -2.1065 4.8011 44 1 1.0294 -1.0083 4.3981 45 1 0.7053 -3.0888 3.1735 46 1 2.3714 -3.0260 2.5490 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000370650166.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:21 Heat of formation + Delta-G solvation = -166.653126 kcal Electronic energy + Delta-G solvation = -28234.481081 eV Core-core repulsion = 24251.263404 eV Total energy + Delta-G solvation = -3983.217677 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.12994 -38.18373 -37.18519 -35.99388 -35.18530 -34.99034 -32.94040 -32.35032 -31.78070 -29.48095 -27.60962 -27.13277 -24.89076 -23.71895 -23.43498 -21.82640 -20.98325 -20.28370 -18.98795 -18.04711 -17.50649 -17.09804 -16.81113 -16.29637 -16.03136 -15.76047 -15.34301 -15.00690 -14.77397 -14.62373 -14.31865 -14.22173 -13.78356 -13.49792 -13.36776 -12.97592 -12.77670 -12.43411 -12.27013 -12.19103 -12.14373 -12.10327 -12.01694 -11.94983 -11.72785 -11.55078 -11.40349 -11.27946 -10.90014 -10.84770 -10.64391 -10.50631 -10.17384 -10.17009 -9.86916 -9.84708 -9.10829 -8.62753 -8.41509 -6.45307 -4.15584 0.18821 2.44092 3.13103 3.40732 3.42284 3.46493 3.61009 3.77797 3.91378 4.11318 4.20269 4.36538 4.43840 4.48461 4.60694 4.78473 4.83639 4.87841 4.92635 4.97663 5.00628 5.03899 5.11591 5.17695 5.26135 5.32633 5.34306 5.38387 5.49187 5.59838 5.65836 5.67990 5.70707 5.74560 6.02257 6.05120 6.15455 6.22369 6.61190 6.63583 6.80203 7.20043 7.31962 8.07781 8.36256 8.78121 9.56828 10.95413 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.024998 B = 0.002608 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.802791 B =10732.387971 C =10830.954357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.095 3.905 3 H 0.095 0.905 4 O -0.375 6.375 5 C 0.058 3.942 6 C -0.188 4.188 7 C 0.081 3.919 8 C 0.101 3.899 9 N -1.006 6.006 10 S 2.598 3.402 11 O -0.955 6.955 12 O -0.956 6.956 13 C -0.609 4.609 14 C -0.099 4.099 15 C 0.018 3.982 16 C -0.609 4.609 17 H 0.052 0.948 18 C 0.016 3.984 19 N -0.911 5.911 20 Si 1.069 2.931 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.286 1.286 24 C 0.082 3.918 25 C 0.047 3.953 26 O -0.353 6.353 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.109 0.891 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.011 0.989 41 H 0.012 0.988 42 H 0.268 0.732 43 H 0.106 0.894 44 H 0.079 0.921 45 H 0.110 0.890 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.665 -13.057 -18.145 24.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.037 3.963 3 H 0.113 0.887 4 O -0.295 6.295 5 C -0.018 4.018 6 C -0.225 4.225 7 C 0.039 3.961 8 C -0.025 4.025 9 N -0.843 5.843 10 S 2.696 3.304 11 O -0.945 6.945 12 O -0.946 6.946 13 C -0.741 4.741 14 C -0.138 4.138 15 C -0.020 4.020 16 C -0.647 4.647 17 H 0.070 0.930 18 C -0.188 4.188 19 N -0.547 5.547 20 Si 0.897 3.103 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.213 1.213 24 C -0.044 4.044 25 C -0.031 4.031 26 O -0.271 6.271 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.099 0.901 35 H 0.127 0.873 36 H 0.146 0.854 37 H 0.146 0.854 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.030 0.970 41 H 0.030 0.970 42 H 0.078 0.922 43 H 0.124 0.876 44 H 0.097 0.903 45 H 0.128 0.872 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.486 -12.522 -17.420 23.458 hybrid contribution -0.835 -0.671 -0.476 1.172 sum -10.321 -13.193 -17.897 24.513 Atomic orbital electron populations 1.21884 0.93620 1.03370 1.01971 1.22619 0.95706 0.95593 0.82405 0.88687 1.88488 1.71487 1.40011 1.29489 1.23335 0.95135 0.88837 0.94542 1.23871 0.99127 1.02423 0.97111 1.22570 0.88880 0.90882 0.93728 1.21905 1.02608 0.93649 0.84313 1.58031 1.37869 1.50142 1.38267 1.05489 0.72897 0.76500 0.75558 1.93560 1.62676 1.82752 1.55562 1.93562 1.82644 1.41466 1.76967 1.30607 1.09942 1.17700 1.15877 1.21375 0.91618 1.02217 0.98609 1.19181 0.97779 0.92186 0.92885 1.22063 0.96318 1.24319 1.21978 0.92988 1.25898 1.03197 0.93283 0.96399 1.70802 1.00968 1.41300 1.41609 0.83536 0.74114 0.76456 0.76181 1.20677 1.21303 1.21286 1.22050 0.93567 0.90980 0.97781 1.22949 1.01080 0.92806 0.86249 1.87842 1.36825 1.53844 1.48625 0.91344 0.92132 0.91300 0.89475 0.91950 0.88531 0.89225 0.90117 0.87330 0.85442 0.85436 0.91393 0.91418 0.97031 0.97010 0.92160 0.87572 0.90314 0.87221 0.92160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 8.87 37.16 0.33 -0.92 16 2 C 0.09 0.87 3.76 -26.40 -0.10 0.77 16 3 H 0.10 0.76 7.78 -51.93 -0.40 0.36 16 4 O -0.38 -4.04 11.03 -35.23 -0.39 -4.42 16 5 C 0.06 0.52 7.78 38.25 0.30 0.82 16 6 C -0.19 -1.81 6.01 -24.79 -0.15 -1.96 16 7 C 0.08 0.77 0.70 -89.72 -0.06 0.70 16 8 C 0.10 0.97 5.22 -3.88 -0.02 0.95 16 9 N -1.01 -10.72 3.18 -113.66 -0.36 -11.08 16 10 S 2.60 36.50 5.48 -107.50 -0.59 35.91 16 11 O -0.96 -15.62 16.62 -57.54 -0.96 -16.58 16 12 O -0.96 -15.72 16.62 -57.54 -0.96 -16.68 16 13 C -0.61 -9.08 6.18 37.16 0.23 -8.85 16 14 C -0.10 -1.98 5.16 -26.73 -0.14 -2.12 16 15 C 0.02 0.45 4.28 -27.88 -0.12 0.33 16 16 C -0.61 -17.26 9.11 -34.44 -0.31 -17.57 16 17 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 18 C 0.02 0.46 5.46 -17.82 -0.10 0.37 16 19 N -0.91 -27.60 13.65 55.43 0.76 -26.85 16 20 Si 1.07 25.11 29.90 -169.99 -5.08 20.03 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 23 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 24 C 0.08 0.72 6.62 -3.76 -0.02 0.69 16 25 C 0.05 0.37 6.75 37.08 0.25 0.62 16 26 O -0.35 -3.29 8.63 -35.23 -0.30 -3.59 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.63 7.49 -51.93 -0.39 0.24 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.10 1.00 7.84 -51.93 -0.41 0.59 16 33 H 0.09 0.84 6.02 -51.93 -0.31 0.53 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.11 1.07 6.66 -51.93 -0.35 0.72 16 36 H 0.13 1.69 8.14 -51.92 -0.42 1.26 16 37 H 0.13 1.69 8.14 -51.92 -0.42 1.27 16 38 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 39 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.01 0.29 8.01 -51.93 -0.42 -0.12 16 41 H 0.01 0.30 8.01 -51.93 -0.42 -0.12 16 42 H 0.27 8.02 7.22 -40.82 -0.29 7.72 16 43 H 0.11 0.94 6.88 -51.93 -0.36 0.58 16 44 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.06 0.49 6.16 -51.93 -0.32 0.17 16 LS Contribution 371.72 15.07 5.60 5.60 Total: -1.00 -35.20 371.72 -9.71 -44.91 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -7.51 Total: -1.09 kcal Atomic # 6 Polarization: -26.24 SS G_CDS: 0.08 Total: -26.16 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.39 Total: -37.92 kcal Atomic # 8 Polarization: -38.67 SS G_CDS: -2.61 Total: -41.27 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -5.08 Total: 20.03 kcal Atomic # 16 Polarization: 36.50 SS G_CDS: -0.59 Total: 35.91 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.20 -9.71 -44.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000370650166.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.745 kcal (2) G-P(sol) polarization free energy of solvation -35.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds