Wall clock time and date at job start Tue Mar 31 2020 17:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.95969 * 2 1 4 4 O 1.43432 * 109.86032 * 238.97330 * 2 1 3 5 5 C 1.43710 * 109.93147 * 242.74197 * 4 2 1 6 6 C 1.55067 * 105.21228 * 335.67907 * 5 4 2 7 7 C 1.53643 * 109.86169 * 121.03063 * 2 1 3 8 8 C 1.52448 * 110.69452 * 257.81296 * 7 2 1 9 9 N 1.47318 * 108.39781 * 174.24129 * 8 7 2 10 10 S 1.65601 * 121.06560 * 130.68503 * 9 8 7 11 11 O 1.42096 * 104.27856 * 333.92522 * 10 9 8 12 12 O 1.42101 * 104.27519 * 206.06800 * 10 9 8 13 13 C 1.81399 * 104.45044 * 89.99903 * 10 9 8 14 14 C 1.52996 * 109.47374 * 179.97438 * 13 10 9 15 15 C 1.53002 * 109.47346 * 179.97438 * 14 13 10 16 16 C 1.50706 * 109.46931 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00193 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99398 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00338 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99424 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46845 * 180.02562 * 20 18 16 22 22 H 1.48503 * 109.47399 * 299.99813 * 20 18 16 23 23 H 1.48498 * 109.47295 * 60.00420 * 20 18 16 24 24 C 1.47165 * 117.86445 * 310.95684 * 9 8 7 25 25 C 1.52847 * 108.78091 * 50.85492 * 24 9 8 26 26 O 1.41975 * 111.03126 * 21.91069 * 7 2 1 27 27 H 1.09000 * 109.46932 * 298.96947 * 1 2 3 28 28 H 1.08999 * 109.47046 * 58.96584 * 1 2 3 29 29 H 1.09000 * 109.47405 * 178.97191 * 1 2 3 30 30 H 1.09005 * 110.29173 * 216.75125 * 5 4 2 31 31 H 1.08997 * 110.30174 * 94.61487 * 5 4 2 32 32 H 1.08994 * 111.14136 * 277.87361 * 6 5 4 33 33 H 1.08999 * 111.13570 * 153.67346 * 6 5 4 34 34 H 1.08993 * 109.68098 * 54.50767 * 8 7 2 35 35 H 1.09005 * 109.67641 * 293.96858 * 8 7 2 36 36 H 1.09000 * 109.47234 * 59.99844 * 13 10 9 37 37 H 1.09004 * 109.46978 * 299.99806 * 13 10 9 38 38 H 1.09004 * 109.47368 * 59.99868 * 14 13 10 39 39 H 1.09004 * 109.47108 * 299.99969 * 14 13 10 40 40 H 1.09000 * 109.46986 * 60.00254 * 15 14 13 41 41 H 1.08992 * 109.46974 * 300.00318 * 15 14 13 42 42 H 0.97000 * 119.99706 * 359.97438 * 19 18 16 43 43 H 1.08998 * 109.61830 * 170.63270 * 24 9 8 44 44 H 1.08999 * 109.61812 * 291.18917 * 24 9 8 45 45 H 1.09001 * 109.57891 * 187.28704 * 25 24 9 46 46 H 1.09005 * 109.41122 * 67.21272 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9021 1.0245 0.0000 4 8 2.0173 -0.6953 -1.1560 5 6 2.7657 -1.8536 -0.7517 6 6 3.2575 -1.5392 0.6849 7 6 2.0520 -0.7449 1.2382 8 6 2.5182 0.2411 2.3034 9 7 2.8759 -0.5175 3.5145 10 16 4.3173 -0.2615 4.2885 11 8 5.1802 0.2260 3.2702 12 8 4.5841 -1.4915 4.9481 13 6 3.9571 1.0433 5.4962 14 6 5.2261 1.3726 6.2850 15 6 4.9224 2.4736 7.3031 16 6 6.1723 2.7975 8.0805 17 1 7.0913 2.2710 7.8691 18 6 6.1423 3.7659 9.0615 19 7 5.0230 4.4066 9.3191 20 14 7.6916 4.1678 10.0245 21 1 7.3966 5.2355 11.0136 22 1 8.1623 2.9518 10.7351 23 1 8.7475 4.6355 9.0909 24 6 1.9138 -1.5143 4.0109 25 6 1.5119 -2.4290 2.8542 26 8 1.0688 -1.6310 1.7519 27 1 -0.3633 0.4977 0.8991 28 1 -0.3633 0.5298 -0.8806 29 1 -0.3634 -1.0275 -0.0184 30 1 3.6153 -2.0060 -1.4173 31 1 2.1249 -2.7353 -0.7473 32 1 4.1579 -0.9251 0.6666 33 1 3.4198 -2.4546 1.2539 34 1 1.7147 0.9410 2.5325 35 1 3.3894 0.7874 1.9417 36 1 3.1824 0.7000 6.1818 37 1 3.6113 1.9358 4.9746 38 1 6.0011 1.7158 5.5996 39 1 5.5715 0.4800 6.8066 40 1 4.1473 2.1308 7.9886 41 1 4.5772 3.3659 6.7812 42 1 4.2187 4.1980 8.8188 43 1 2.3753 -2.1065 4.8011 44 1 1.0294 -1.0083 4.3981 45 1 0.7053 -3.0888 3.1735 46 1 2.3714 -3.0260 2.5490 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000370650166.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:20 Heat of formation + Delta-G solvation = -192.265818 kcal Electronic energy + Delta-G solvation = -28235.591731 eV Core-core repulsion = 24251.263404 eV Total energy + Delta-G solvation = -3984.328327 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.84313 -38.91847 -38.40087 -37.21801 -36.82254 -35.96940 -34.27727 -33.64992 -32.47472 -30.18886 -29.36219 -27.93101 -25.61131 -25.46565 -24.38205 -22.84739 -22.40052 -21.05597 -19.97143 -19.23595 -18.84537 -18.26831 -17.69990 -17.39582 -17.11767 -16.60872 -16.32117 -15.85519 -15.71963 -15.68856 -15.48614 -15.32800 -15.21962 -14.94997 -14.17060 -13.96951 -13.76726 -13.71384 -13.56948 -13.40138 -13.33446 -13.18698 -13.07288 -12.89576 -12.73329 -12.63094 -12.60037 -12.54394 -12.06427 -11.96881 -11.94947 -11.91917 -11.60215 -11.38683 -11.19565 -10.72255 -10.58698 -10.58126 -9.88239 -8.73731 -6.45166 -0.95540 1.44789 1.51557 1.59194 1.78930 2.46240 2.53166 2.64250 2.77111 2.94566 3.11056 3.31078 3.38192 3.54676 3.69176 3.75435 3.77780 3.93948 4.12219 4.14527 4.19203 4.23224 4.26697 4.36366 4.41804 4.44949 4.54962 4.59063 4.68176 4.72693 4.75054 4.82263 4.84994 4.89350 4.97108 5.01885 5.08642 5.21745 5.31036 5.34523 5.41201 5.91821 5.92020 6.12122 6.13018 6.52484 7.36030 8.67846 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.024998 B = 0.002608 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.802791 B =10732.387971 C =10830.954357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.089 3.911 3 H 0.105 0.895 4 O -0.394 6.394 5 C 0.058 3.942 6 C -0.191 4.191 7 C 0.083 3.917 8 C 0.094 3.906 9 N -0.998 5.998 10 S 2.624 3.376 11 O -0.979 6.979 12 O -0.980 6.980 13 C -0.611 4.611 14 C -0.100 4.100 15 C 0.015 3.985 16 C -0.631 4.631 17 H 0.051 0.949 18 C -0.036 4.036 19 N -0.935 5.935 20 Si 1.115 2.885 21 H -0.281 1.281 22 H -0.269 1.269 23 H -0.269 1.269 24 C 0.074 3.926 25 C 0.044 3.956 26 O -0.356 6.356 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.097 0.903 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.000 1.000 41 H 0.000 1.000 42 H 0.258 0.742 43 H 0.105 0.895 44 H 0.100 0.900 45 H 0.137 0.863 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.244 -13.658 -18.589 25.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.031 3.969 3 H 0.123 0.877 4 O -0.314 6.314 5 C -0.018 4.018 6 C -0.229 4.229 7 C 0.041 3.959 8 C -0.031 4.031 9 N -0.837 5.837 10 S 2.721 3.279 11 O -0.970 6.970 12 O -0.970 6.970 13 C -0.741 4.741 14 C -0.139 4.139 15 C -0.023 4.023 16 C -0.668 4.668 17 H 0.070 0.930 18 C -0.234 4.234 19 N -0.572 5.572 20 Si 0.936 3.064 21 H -0.207 1.207 22 H -0.194 1.194 23 H -0.194 1.194 24 C -0.051 4.051 25 C -0.033 4.033 26 O -0.275 6.275 27 H 0.097 0.903 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.115 0.885 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.163 0.837 37 H 0.163 0.837 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.018 0.982 41 H 0.018 0.982 42 H 0.067 0.933 43 H 0.123 0.877 44 H 0.118 0.882 45 H 0.155 0.845 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.067 -13.133 -17.870 24.355 hybrid contribution -0.727 -0.535 -0.399 0.987 sum -10.794 -13.668 -18.269 25.240 Atomic orbital electron populations 1.21842 0.92885 1.02909 1.02645 1.22775 0.96310 0.95925 0.81862 0.87688 1.88464 1.71813 1.40612 1.30479 1.23403 0.95455 0.88571 0.94394 1.23875 0.98952 1.02376 0.97678 1.22537 0.88769 0.90851 0.93704 1.22119 1.03236 0.94014 0.83767 1.57714 1.37310 1.50591 1.38099 1.04492 0.73230 0.75408 0.74779 1.93526 1.64287 1.83009 1.56139 1.93527 1.83535 1.42369 1.77604 1.30579 1.07842 1.19362 1.16346 1.21191 0.94272 1.00408 0.98049 1.19123 0.96199 0.93380 0.93577 1.22566 0.97584 1.24267 1.22426 0.93019 1.27421 1.05360 0.93112 0.97486 1.70925 1.01384 1.42523 1.42397 0.82967 0.71067 0.76995 0.75404 1.20653 1.19378 1.19388 1.22328 0.93652 0.90874 0.98199 1.23119 1.02009 0.92671 0.85519 1.87848 1.36747 1.53887 1.48995 0.90344 0.91789 0.92254 0.88490 0.91470 0.89612 0.89153 0.87846 0.87771 0.83659 0.83707 0.91620 0.91616 0.98159 0.98159 0.93284 0.87664 0.88200 0.84547 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 8.87 71.98 0.64 -1.50 16 2 C 0.09 1.50 3.76 30.81 0.12 1.61 16 3 H 0.11 1.51 7.78 -2.39 -0.02 1.49 16 4 O -0.39 -8.03 11.03 -148.98 -1.64 -9.67 16 5 C 0.06 0.99 7.78 72.69 0.57 1.55 16 6 C -0.19 -3.50 6.01 31.85 0.19 -3.30 16 7 C 0.08 1.43 0.70 -10.21 -0.01 1.42 16 8 C 0.09 1.61 5.22 86.04 0.45 2.06 16 9 N -1.00 -19.35 3.18 -513.52 -1.63 -20.98 16 10 S 2.62 70.87 5.48 -56.49 -0.31 70.56 16 11 O -0.98 -31.42 16.62 -127.65 -2.12 -33.54 16 12 O -0.98 -31.37 16.62 -127.65 -2.12 -33.49 16 13 C -0.61 -17.49 6.18 71.98 0.44 -17.04 16 14 C -0.10 -4.01 5.16 30.59 0.16 -3.85 16 15 C 0.02 0.78 4.28 29.85 0.13 0.91 16 16 C -0.63 -36.05 9.11 25.60 0.23 -35.81 16 17 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 18 C -0.04 -2.08 5.46 84.66 0.46 -1.61 16 19 N -0.94 -57.30 13.65 21.45 0.29 -57.01 16 20 Si 1.11 49.96 29.90 68.60 2.05 52.01 16 21 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 22 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 23 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 24 C 0.07 1.11 6.62 86.20 0.57 1.68 16 25 C 0.04 0.60 6.75 71.93 0.49 1.08 16 26 O -0.36 -5.81 8.63 -148.97 -1.29 -7.09 16 27 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 0.98 7.49 -2.39 -0.02 0.97 16 30 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.09 1.74 7.84 -2.39 -0.02 1.72 16 33 H 0.09 1.61 6.02 -2.39 -0.01 1.59 16 34 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.10 1.91 6.66 -2.38 -0.02 1.89 16 36 H 0.15 3.61 8.14 -2.39 -0.02 3.59 16 37 H 0.14 3.61 8.14 -2.39 -0.02 3.59 16 38 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 39 H 0.07 2.61 8.14 -2.38 -0.02 2.59 16 40 H 0.00 0.01 8.01 -2.39 -0.02 -0.01 16 41 H 0.00 0.01 8.01 -2.39 -0.02 -0.01 16 42 H 0.26 15.77 7.22 -92.71 -0.67 15.10 16 43 H 0.11 1.64 6.88 -2.39 -0.02 1.63 16 44 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.06 0.81 6.16 -2.38 -0.01 0.80 16 Total: -1.00 -75.37 371.72 -1.28 -76.64 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 1.06 Total: 15.37 kcal Atomic # 6 Polarization: -57.23 SS G_CDS: 4.44 Total: -52.80 kcal Atomic # 7 Polarization: -76.65 SS G_CDS: -1.34 Total: -77.99 kcal Atomic # 8 Polarization: -76.62 SS G_CDS: -7.17 Total: -83.79 kcal Atomic # 14 Polarization: 49.96 SS G_CDS: 2.05 Total: 52.01 kcal Atomic # 16 Polarization: 70.87 SS G_CDS: -0.31 Total: 70.56 kcal Total: -75.37 -1.28 -76.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000370650166.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.624 kcal (2) G-P(sol) polarization free energy of solvation -75.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds