Wall clock time and date at job start Tue Mar 31 2020 17:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.90198 * 2 1 4 4 O 1.43891 * 109.91040 * 238.91214 * 2 1 3 5 5 C 1.44433 * 106.99618 * 214.24847 * 4 2 1 6 6 C 1.55112 * 103.55498 * 39.73322 * 5 4 2 7 7 C 1.53585 * 109.91052 * 121.27593 * 2 1 3 8 8 C 1.52665 * 110.33279 * 3.20234 * 7 2 1 9 9 N 1.47280 * 108.39369 * 287.88752 * 8 7 2 10 10 S 1.65593 * 121.04757 * 130.45044 * 9 8 7 11 11 O 1.42103 * 104.27605 * 214.62296 * 10 9 8 12 12 O 1.42102 * 104.27985 * 342.48400 * 10 9 8 13 13 C 1.81401 * 104.44843 * 98.55540 * 10 9 8 14 14 C 1.53001 * 109.47133 * 180.43492 * 13 10 9 15 15 C 1.52998 * 109.47286 * 180.02562 * 14 13 10 16 16 C 1.50701 * 109.47273 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99965 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00011 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00454 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00110 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47281 * 59.99783 * 20 18 16 22 22 H 1.48499 * 109.47518 * 180.02562 * 20 18 16 23 23 H 1.48509 * 109.46872 * 299.99952 * 20 18 16 24 24 C 1.47155 * 117.90164 * 310.42765 * 9 8 7 25 25 C 1.53279 * 108.52634 * 51.03219 * 24 9 8 26 26 O 1.42229 * 110.61512 * 240.24125 * 7 2 1 27 27 H 1.09000 * 109.47117 * 185.30007 * 1 2 3 28 28 H 1.08997 * 109.47335 * 305.30374 * 1 2 3 29 29 H 1.08995 * 109.46913 * 65.30350 * 1 2 3 30 30 H 1.09009 * 110.60301 * 158.24362 * 5 4 2 31 31 H 1.09000 * 110.60869 * 281.21298 * 5 4 2 32 32 H 1.08999 * 110.92523 * 205.23818 * 6 5 4 33 33 H 1.09000 * 110.93173 * 81.57636 * 6 5 4 34 34 H 1.09001 * 109.67787 * 47.61242 * 8 7 2 35 35 H 1.09005 * 109.68156 * 168.15638 * 8 7 2 36 36 H 1.08990 * 109.47330 * 300.43276 * 13 10 9 37 37 H 1.08997 * 109.47442 * 60.43770 * 13 10 9 38 38 H 1.09002 * 109.47235 * 299.99986 * 14 13 10 39 39 H 1.09005 * 109.47311 * 60.00032 * 14 13 10 40 40 H 1.09002 * 109.46935 * 300.00124 * 15 14 13 41 41 H 1.08997 * 109.47403 * 60.00209 * 15 14 13 42 42 H 0.96999 * 120.00326 * 179.97438 * 19 18 16 43 43 H 1.09001 * 109.62340 * 291.32238 * 24 9 8 44 44 H 1.08996 * 109.78798 * 170.84026 * 24 9 8 45 45 H 1.08997 * 109.51472 * 187.25998 * 25 24 9 46 46 H 1.08999 * 109.51364 * 67.10927 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9010 1.0249 0.0000 4 8 2.0200 -0.6986 -1.1586 5 6 3.2373 -1.3685 -0.7642 6 6 2.9194 -1.8905 0.6615 7 6 2.0530 -0.7497 1.2342 8 6 0.8898 -1.3297 2.0350 9 7 0.1888 -0.2214 2.7053 10 16 -1.4569 -0.0671 2.6055 11 8 -1.6766 1.3367 2.5851 12 8 -1.8188 -0.8815 1.4987 13 6 -2.0736 -0.7853 4.1529 14 6 -3.6016 -0.7111 4.1763 15 6 -4.1217 -1.3164 5.4817 16 6 -5.6268 -1.2438 5.5044 17 1 -6.1591 -0.8091 4.6713 18 6 -6.3242 -1.7324 6.5887 19 7 -5.6761 -2.2623 7.6030 20 14 -8.1899 -1.6431 6.6167 21 1 -8.7392 -2.4028 5.4649 22 1 -8.6948 -2.2305 7.8837 23 1 -8.6190 -0.2244 6.5238 24 6 0.9969 0.7441 3.4671 25 6 2.1385 1.2376 2.5712 26 8 2.8448 0.1104 2.0443 27 1 -0.3633 -1.0233 0.0949 28 1 -0.3634 0.5939 0.8386 29 1 -0.3633 0.4294 -0.9336 30 1 3.4538 -2.1983 -1.4371 31 1 4.0707 -0.6664 -0.7387 32 1 3.8329 -2.0153 1.2430 33 1 2.3566 -2.8229 0.6182 34 1 0.2033 -1.8457 1.3638 35 1 1.2696 -2.0283 2.7805 36 1 -1.7594 -1.8268 4.2206 37 1 -1.6699 -0.2283 4.9983 38 1 -3.9159 0.3304 4.1086 39 1 -4.0055 -1.2682 3.3308 40 1 -3.8075 -2.3579 5.5498 41 1 -3.7180 -0.7590 6.3268 42 1 -6.1667 -2.6057 8.3661 43 1 1.4092 0.2590 4.3518 44 1 0.3765 1.5883 3.7680 45 1 2.8209 1.8534 3.1571 46 1 1.7289 1.8266 1.7507 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000370650167.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:24 Heat of formation + Delta-G solvation = -141.428984 kcal Electronic energy + Delta-G solvation = -28709.343738 eV Core-core repulsion = 24727.219861 eV Total energy + Delta-G solvation = -3982.123876 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.23514 -38.06715 -37.14371 -36.11497 -35.23452 -34.72951 -32.93896 -32.25157 -31.68853 -29.22558 -27.86504 -26.70428 -25.29754 -23.77244 -23.01240 -22.50790 -20.64760 -20.13546 -18.78204 -18.06235 -17.62730 -16.74512 -16.51195 -16.09340 -15.93103 -15.81043 -15.40306 -15.06590 -14.78814 -14.59565 -14.40441 -14.25624 -14.20959 -13.12821 -13.08290 -12.68791 -12.52835 -12.41889 -12.28822 -12.16030 -12.02756 -11.93666 -11.89222 -11.77066 -11.63163 -11.42817 -11.36099 -11.11361 -10.92654 -10.89241 -10.60866 -10.42369 -10.34667 -10.00519 -9.94938 -9.50052 -9.24578 -8.87369 -8.43816 -6.08819 -4.12350 0.27745 2.52440 3.19986 3.29975 3.33978 3.37049 3.59290 3.84121 4.05426 4.09967 4.31766 4.35709 4.39530 4.46729 4.69323 4.77152 4.84181 4.94188 4.96063 5.07115 5.11249 5.19506 5.22742 5.27422 5.27797 5.29081 5.32906 5.42506 5.51417 5.57238 5.63760 5.70978 5.81470 5.86278 6.13727 6.23252 6.25446 6.37676 6.57772 6.80981 6.83710 7.52156 7.61736 7.88624 8.28718 8.93574 9.52594 11.02350 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.027003 B = 0.002748 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.679265 B =10187.188259 C =10368.452082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.054 3.946 3 H 0.074 0.926 4 O -0.368 6.368 5 C 0.047 3.953 6 C -0.142 4.142 7 C 0.081 3.919 8 C 0.096 3.904 9 N -1.008 6.008 10 S 2.596 3.404 11 O -0.957 6.957 12 O -0.954 6.954 13 C -0.610 4.610 14 C -0.106 4.106 15 C 0.031 3.969 16 C -0.528 4.528 17 H 0.058 0.942 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.895 3.105 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.275 1.275 24 C 0.083 3.917 25 C 0.047 3.953 26 O -0.361 6.361 27 H 0.100 0.900 28 H 0.047 0.953 29 H 0.067 0.933 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.118 0.882 35 H 0.079 0.921 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.021 0.979 41 H 0.020 0.980 42 H 0.262 0.738 43 H 0.079 0.921 44 H 0.103 0.897 45 H 0.109 0.891 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.424 2.948 -11.907 24.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.004 4.004 3 H 0.092 0.908 4 O -0.287 6.287 5 C -0.030 4.030 6 C -0.180 4.180 7 C 0.039 3.961 8 C -0.029 4.029 9 N -0.845 5.845 10 S 2.695 3.305 11 O -0.948 6.948 12 O -0.944 6.944 13 C -0.741 4.741 14 C -0.145 4.145 15 C -0.007 4.007 16 C -0.566 4.566 17 H 0.076 0.924 18 C -0.143 4.143 19 N -0.534 5.534 20 Si 0.722 3.278 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.201 1.201 24 C -0.042 4.042 25 C -0.031 4.031 26 O -0.279 6.279 27 H 0.119 0.881 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.115 0.885 31 H 0.082 0.918 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.136 0.864 35 H 0.097 0.903 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.039 0.961 41 H 0.039 0.961 42 H 0.072 0.928 43 H 0.098 0.902 44 H 0.121 0.879 45 H 0.127 0.873 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 21.026 3.232 -12.629 24.739 hybrid contribution -0.975 -0.123 1.115 1.486 sum 20.051 3.110 -11.514 23.330 Atomic orbital electron populations 1.22615 0.92303 1.04878 1.01912 1.23310 0.96173 0.96105 0.84799 0.90814 1.88960 1.39704 1.67525 1.32542 1.23581 0.88073 0.96585 0.94719 1.23095 1.01071 0.97117 0.96707 1.22644 0.91607 0.91199 0.90611 1.22146 0.95007 0.88823 0.96941 1.58108 1.24743 1.36706 1.64959 1.05732 0.72222 0.75237 0.77299 1.93578 1.83616 1.30019 1.87547 1.93590 1.81592 1.71125 1.48095 1.30584 1.09611 1.13359 1.20595 1.21519 0.86699 1.02333 1.03995 1.19056 0.95804 0.96068 0.89764 1.21208 0.91647 1.40017 1.03767 0.92399 1.25017 0.98743 0.95059 0.95500 1.69943 1.35776 1.40204 1.07504 0.86610 0.85311 0.78497 0.77351 1.20071 1.21204 1.20091 1.22093 0.94379 0.92967 0.94789 1.22986 0.94633 0.88231 0.97258 1.87875 1.36075 1.37261 1.66719 0.88134 0.93481 0.91421 0.88515 0.91829 0.88550 0.88584 0.86418 0.90252 0.85317 0.85520 0.91640 0.91484 0.96102 0.96135 0.92791 0.90238 0.87911 0.87267 0.92104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 6.92 37.16 0.26 -1.84 16 2 C 0.05 0.62 3.24 -26.43 -0.09 0.53 16 3 H 0.07 0.84 6.67 -51.93 -0.35 0.49 16 4 O -0.37 -4.30 11.20 -35.23 -0.39 -4.69 16 5 C 0.05 0.38 7.73 38.27 0.30 0.68 16 6 C -0.14 -1.08 6.44 -24.95 -0.16 -1.24 16 7 C 0.08 0.80 0.97 -89.82 -0.09 0.71 16 8 C 0.10 0.97 4.75 -3.79 -0.02 0.95 16 9 N -1.01 -11.23 2.10 -113.33 -0.24 -11.47 16 10 S 2.60 37.24 3.90 -107.50 -0.42 36.82 16 11 O -0.96 -16.07 16.37 -57.54 -0.94 -17.01 16 12 O -0.95 -15.27 13.32 -57.54 -0.77 -16.04 16 13 C -0.61 -9.26 6.18 37.16 0.23 -9.03 16 14 C -0.11 -2.13 5.16 -26.73 -0.14 -2.26 16 15 C 0.03 0.79 4.97 -27.88 -0.14 0.65 16 16 C -0.53 -14.80 9.11 -34.44 -0.31 -15.11 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.90 -26.44 13.29 55.43 0.74 -25.70 16 20 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 C 0.08 0.77 6.62 -3.54 -0.02 0.74 16 25 C 0.05 0.40 6.70 37.30 0.25 0.65 16 26 O -0.36 -3.57 10.17 -35.23 -0.36 -3.93 16 27 H 0.10 1.36 4.54 -51.93 -0.24 1.12 16 28 H 0.05 0.64 3.82 -34.92 -0.13 0.51 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.10 0.60 8.14 -51.92 -0.42 0.17 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.10 0.63 8.07 -51.93 -0.42 0.21 16 33 H 0.10 0.62 7.84 -51.93 -0.41 0.21 16 34 H 0.12 1.24 4.92 -51.93 -0.26 0.99 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.13 1.75 8.14 -51.93 -0.42 1.33 16 37 H 0.13 1.72 8.14 -51.93 -0.42 1.30 16 38 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 39 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.10 0.92 7.15 -51.93 -0.37 0.55 16 45 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.06 0.56 6.55 -51.93 -0.34 0.22 16 LS Contribution 358.77 15.07 5.41 5.41 Total: -1.00 -34.17 358.77 -9.15 -43.32 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -7.12 Total: -0.14 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: -0.03 Total: -23.00 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.50 Total: -37.17 kcal Atomic # 8 Polarization: -39.21 SS G_CDS: -2.46 Total: -41.67 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 37.24 SS G_CDS: -0.42 Total: 36.82 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.17 -9.15 -43.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000370650167.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.109 kcal (2) G-P(sol) polarization free energy of solvation -34.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds