Wall clock time and date at job start Tue Mar 31 2020 17:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.90198 * 2 1 4 4 O 1.43891 * 109.91040 * 238.91214 * 2 1 3 5 5 C 1.44433 * 106.99618 * 214.24847 * 4 2 1 6 6 C 1.55112 * 103.55498 * 39.73322 * 5 4 2 7 7 C 1.53585 * 109.91052 * 121.27593 * 2 1 3 8 8 C 1.52665 * 110.33279 * 3.20234 * 7 2 1 9 9 N 1.47280 * 108.39369 * 287.88752 * 8 7 2 10 10 S 1.65593 * 121.04757 * 130.45044 * 9 8 7 11 11 O 1.42103 * 104.27605 * 214.62296 * 10 9 8 12 12 O 1.42102 * 104.27985 * 342.48400 * 10 9 8 13 13 C 1.81401 * 104.44843 * 98.55540 * 10 9 8 14 14 C 1.53001 * 109.47133 * 180.43492 * 13 10 9 15 15 C 1.52998 * 109.47286 * 180.02562 * 14 13 10 16 16 C 1.50701 * 109.47273 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99965 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00011 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00454 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00110 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47281 * 59.99783 * 20 18 16 22 22 H 1.48499 * 109.47518 * 180.02562 * 20 18 16 23 23 H 1.48509 * 109.46872 * 299.99952 * 20 18 16 24 24 C 1.47155 * 117.90164 * 310.42765 * 9 8 7 25 25 C 1.53279 * 108.52634 * 51.03219 * 24 9 8 26 26 O 1.42229 * 110.61512 * 240.24125 * 7 2 1 27 27 H 1.09000 * 109.47117 * 185.30007 * 1 2 3 28 28 H 1.08997 * 109.47335 * 305.30374 * 1 2 3 29 29 H 1.08995 * 109.46913 * 65.30350 * 1 2 3 30 30 H 1.09009 * 110.60301 * 158.24362 * 5 4 2 31 31 H 1.09000 * 110.60869 * 281.21298 * 5 4 2 32 32 H 1.08999 * 110.92523 * 205.23818 * 6 5 4 33 33 H 1.09000 * 110.93173 * 81.57636 * 6 5 4 34 34 H 1.09001 * 109.67787 * 47.61242 * 8 7 2 35 35 H 1.09005 * 109.68156 * 168.15638 * 8 7 2 36 36 H 1.08990 * 109.47330 * 300.43276 * 13 10 9 37 37 H 1.08997 * 109.47442 * 60.43770 * 13 10 9 38 38 H 1.09002 * 109.47235 * 299.99986 * 14 13 10 39 39 H 1.09005 * 109.47311 * 60.00032 * 14 13 10 40 40 H 1.09002 * 109.46935 * 300.00124 * 15 14 13 41 41 H 1.08997 * 109.47403 * 60.00209 * 15 14 13 42 42 H 0.96999 * 120.00326 * 179.97438 * 19 18 16 43 43 H 1.09001 * 109.62340 * 291.32238 * 24 9 8 44 44 H 1.08996 * 109.78798 * 170.84026 * 24 9 8 45 45 H 1.08997 * 109.51472 * 187.25998 * 25 24 9 46 46 H 1.08999 * 109.51364 * 67.10927 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9010 1.0249 0.0000 4 8 2.0200 -0.6986 -1.1586 5 6 3.2373 -1.3685 -0.7642 6 6 2.9194 -1.8905 0.6615 7 6 2.0530 -0.7497 1.2342 8 6 0.8898 -1.3297 2.0350 9 7 0.1888 -0.2214 2.7053 10 16 -1.4569 -0.0671 2.6055 11 8 -1.6766 1.3367 2.5851 12 8 -1.8188 -0.8815 1.4987 13 6 -2.0736 -0.7853 4.1529 14 6 -3.6016 -0.7111 4.1763 15 6 -4.1217 -1.3164 5.4817 16 6 -5.6268 -1.2438 5.5044 17 1 -6.1591 -0.8091 4.6713 18 6 -6.3242 -1.7324 6.5887 19 7 -5.6761 -2.2623 7.6030 20 14 -8.1899 -1.6431 6.6167 21 1 -8.7392 -2.4028 5.4649 22 1 -8.6948 -2.2305 7.8837 23 1 -8.6190 -0.2244 6.5238 24 6 0.9969 0.7441 3.4671 25 6 2.1385 1.2376 2.5712 26 8 2.8448 0.1104 2.0443 27 1 -0.3633 -1.0233 0.0949 28 1 -0.3634 0.5939 0.8386 29 1 -0.3633 0.4294 -0.9336 30 1 3.4538 -2.1983 -1.4371 31 1 4.0707 -0.6664 -0.7387 32 1 3.8329 -2.0153 1.2430 33 1 2.3566 -2.8229 0.6182 34 1 0.2033 -1.8457 1.3638 35 1 1.2696 -2.0283 2.7805 36 1 -1.7594 -1.8268 4.2206 37 1 -1.6699 -0.2283 4.9983 38 1 -3.9159 0.3304 4.1086 39 1 -4.0055 -1.2682 3.3308 40 1 -3.8075 -2.3579 5.5498 41 1 -3.7180 -0.7590 6.3268 42 1 -6.1667 -2.6057 8.3661 43 1 1.4092 0.2590 4.3518 44 1 0.3765 1.5883 3.7680 45 1 2.8209 1.8534 3.1571 46 1 1.7289 1.8266 1.7507 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000370650167.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:23 Heat of formation + Delta-G solvation = -166.231330 kcal Electronic energy + Delta-G solvation = -28710.419248 eV Core-core repulsion = 24727.219861 eV Total energy + Delta-G solvation = -3983.199387 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.99860 -38.83710 -38.35847 -37.30550 -36.53195 -36.07010 -34.21282 -33.68667 -32.51481 -29.99503 -29.66320 -27.52684 -26.14499 -25.56231 -23.85980 -23.20543 -22.34740 -21.01493 -19.81203 -19.04774 -18.61286 -18.40251 -17.49632 -17.36653 -16.94792 -16.61256 -16.52743 -16.32185 -16.03003 -15.56686 -15.53349 -15.27091 -14.97674 -14.52759 -14.11844 -14.04073 -13.83439 -13.57430 -13.44363 -13.31981 -13.27424 -13.12309 -12.92682 -12.81771 -12.75351 -12.66241 -12.61786 -12.40088 -12.23859 -12.07029 -11.95791 -11.79562 -11.45397 -11.35334 -11.20283 -11.01264 -10.73569 -10.59234 -9.76789 -8.24615 -6.36087 -0.88473 1.39215 1.41631 1.49579 1.51200 2.38288 2.50123 2.67442 2.89887 3.02559 3.08881 3.29505 3.50212 3.58553 3.64122 3.78967 3.84448 3.99337 4.07565 4.14865 4.19644 4.29568 4.33800 4.39410 4.41595 4.49962 4.57876 4.61218 4.63476 4.78617 4.82777 4.85947 4.89709 4.94003 4.98095 5.02822 5.07010 5.23624 5.38103 5.41936 5.58939 5.76494 5.81984 6.11684 6.16857 6.79172 7.33469 8.86692 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.027003 B = 0.002748 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.679265 B =10187.188259 C =10368.452082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.054 3.946 3 H 0.070 0.930 4 O -0.391 6.391 5 C 0.041 3.959 6 C -0.136 4.136 7 C 0.081 3.919 8 C 0.089 3.911 9 N -1.002 6.002 10 S 2.620 3.380 11 O -0.983 6.983 12 O -0.972 6.972 13 C -0.612 4.612 14 C -0.106 4.106 15 C 0.032 3.968 16 C -0.555 4.555 17 H 0.060 0.940 18 C 0.004 3.996 19 N -0.929 5.929 20 Si 0.962 3.038 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.267 1.267 24 C 0.075 3.925 25 C 0.044 3.956 26 O -0.363 6.363 27 H 0.095 0.905 28 H 0.038 0.962 29 H 0.058 0.942 30 H 0.117 0.883 31 H 0.068 0.932 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.003 0.997 41 H 0.003 0.997 42 H 0.266 0.734 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.138 0.862 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.689 2.661 -11.988 25.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.004 4.004 3 H 0.088 0.912 4 O -0.311 6.311 5 C -0.035 4.035 6 C -0.174 4.174 7 C 0.039 3.961 8 C -0.035 4.035 9 N -0.841 5.841 10 S 2.718 3.282 11 O -0.973 6.973 12 O -0.962 6.962 13 C -0.743 4.743 14 C -0.145 4.145 15 C -0.006 4.006 16 C -0.593 4.593 17 H 0.078 0.922 18 C -0.195 4.195 19 N -0.569 5.569 20 Si 0.786 3.214 21 H -0.192 1.192 22 H -0.205 1.205 23 H -0.192 1.192 24 C -0.050 4.050 25 C -0.034 4.034 26 O -0.281 6.281 27 H 0.114 0.886 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.135 0.865 31 H 0.087 0.913 32 H 0.130 0.870 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.122 0.878 36 H 0.163 0.837 37 H 0.161 0.839 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.022 0.978 41 H 0.021 0.979 42 H 0.074 0.926 43 H 0.121 0.879 44 H 0.121 0.879 45 H 0.156 0.844 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 22.285 2.947 -12.708 25.823 hybrid contribution -1.275 -0.022 1.109 1.690 sum 21.010 2.925 -11.600 24.177 Atomic orbital electron populations 1.22602 0.94004 1.04255 1.01092 1.23252 0.94838 0.96382 0.85891 0.91234 1.88931 1.41237 1.67905 1.32992 1.23827 0.86903 0.97149 0.95621 1.23154 1.01468 0.96636 0.96158 1.22680 0.91927 0.91686 0.89817 1.22362 0.94847 0.88771 0.97561 1.57812 1.23403 1.37596 1.65267 1.04833 0.72957 0.74175 0.76281 1.93541 1.84633 1.31512 1.87660 1.93563 1.82587 1.71417 1.48682 1.30565 1.06128 1.15085 1.22481 1.21319 0.90292 1.01736 1.01200 1.18948 0.94775 0.95082 0.91809 1.21709 0.93469 1.40078 1.04050 0.92169 1.25931 1.03894 0.94557 0.95081 1.70057 1.37749 1.40980 1.08137 0.85542 0.79192 0.78908 0.77712 1.19182 1.20539 1.19217 1.22382 0.94286 0.92840 0.95491 1.23147 0.95020 0.88093 0.97151 1.87880 1.36218 1.37475 1.66546 0.88615 0.94304 0.92293 0.86507 0.91326 0.86961 0.87330 0.87110 0.87813 0.83688 0.83902 0.91741 0.91460 0.97844 0.97895 0.92557 0.87943 0.87894 0.84437 0.93177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.27 6.92 71.98 0.50 -3.78 16 2 C 0.05 1.21 3.24 30.79 0.10 1.31 16 3 H 0.07 1.56 6.67 -2.39 -0.02 1.55 16 4 O -0.39 -8.77 11.20 -148.98 -1.67 -10.44 16 5 C 0.04 0.58 7.73 72.71 0.56 1.14 16 6 C -0.14 -1.71 6.44 31.75 0.20 -1.50 16 7 C 0.08 1.43 0.97 -10.28 -0.01 1.42 16 8 C 0.09 1.63 4.75 86.12 0.41 2.04 16 9 N -1.00 -20.80 2.10 -512.46 -1.08 -21.88 16 10 S 2.62 73.78 3.90 -56.49 -0.22 73.56 16 11 O -0.98 -32.88 16.37 -127.65 -2.09 -34.97 16 12 O -0.97 -31.05 13.32 -127.65 -1.70 -32.75 16 13 C -0.61 -18.18 6.18 71.98 0.44 -17.74 16 14 C -0.11 -4.30 5.16 30.59 0.16 -4.14 16 15 C 0.03 1.65 4.97 29.85 0.15 1.80 16 16 C -0.56 -31.52 9.11 25.60 0.23 -31.29 16 17 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 18 C 0.00 0.22 5.46 84.65 0.46 0.68 16 19 N -0.93 -55.50 13.29 21.45 0.28 -55.22 16 20 Si 0.96 43.94 29.54 68.60 2.03 45.97 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 23 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 24 C 0.07 1.22 6.62 86.35 0.57 1.79 16 25 C 0.04 0.66 6.70 72.08 0.48 1.14 16 26 O -0.36 -6.25 10.17 -148.98 -1.52 -7.77 16 27 H 0.10 2.59 4.54 -2.39 -0.01 2.58 16 28 H 0.04 1.07 3.82 -13.20 -0.05 1.02 16 29 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.12 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.11 1.08 8.07 -2.39 -0.02 1.06 16 33 H 0.11 1.09 7.84 -2.39 -0.02 1.07 16 34 H 0.11 2.20 4.92 -2.39 -0.01 2.19 16 35 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.14 3.79 8.14 -2.40 -0.02 3.77 16 37 H 0.14 3.73 8.14 -2.39 -0.02 3.71 16 38 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 39 H 0.07 2.67 8.14 -2.38 -0.02 2.65 16 40 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 41 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 42 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 43 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.10 1.69 7.15 -2.39 -0.02 1.67 16 45 H 0.14 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.05 0.87 6.55 -2.39 -0.02 0.85 16 Total: -1.00 -73.94 358.77 -0.76 -74.71 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.93 Total: 15.92 kcal Atomic # 6 Polarization: -51.40 SS G_CDS: 4.26 Total: -47.14 kcal Atomic # 7 Polarization: -76.30 SS G_CDS: -0.79 Total: -77.10 kcal Atomic # 8 Polarization: -78.95 SS G_CDS: -6.97 Total: -85.92 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: 73.78 SS G_CDS: -0.22 Total: 73.56 kcal Total: -73.94 -0.76 -74.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000370650167.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.525 kcal (2) G-P(sol) polarization free energy of solvation -73.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds