Wall clock time and date at job start Tue Mar 31 2020 17:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.51357 * 2 1 4 4 C 1.52881 * 109.58765 * 239.97085 * 2 1 3 5 5 N 1.47144 * 108.64175 * 187.88764 * 4 2 1 6 6 S 1.65602 * 120.99443 * 230.52993 * 5 4 2 7 7 O 1.42097 * 104.28073 * 153.64819 * 6 5 4 8 8 O 1.42101 * 104.27498 * 25.79096 * 6 5 4 9 9 C 1.81396 * 104.45194 * 269.72036 * 6 5 4 10 10 C 1.53002 * 109.47393 * 179.97438 * 9 6 5 11 11 C 1.50696 * 109.46997 * 179.97438 * 10 9 6 12 12 H 1.07999 * 120.00319 * 0.02562 * 11 10 9 13 13 C 1.37885 * 119.99717 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99913 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 119.99766 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47353 * 269.99586 * 15 13 11 17 17 H 1.48501 * 109.47293 * 30.00037 * 15 13 11 18 18 H 1.48504 * 109.46680 * 149.99835 * 15 13 11 19 19 C 1.47180 * 118.01984 * 50.25982 * 5 4 2 20 20 C 1.53195 * 108.36740 * 309.83270 * 19 5 4 21 21 C 1.53079 * 109.46272 * 172.24341 * 20 19 5 22 22 C 1.53198 * 109.03040 * 176.76450 * 21 20 19 23 23 C 1.53088 * 109.15813 * 303.13877 * 22 21 20 24 24 O 1.42902 * 109.44620 * 57.62858 * 23 22 21 25 25 C 1.42921 * 114.08025 * 298.81382 * 24 23 22 26 26 O 1.42860 * 109.40920 * 52.17118 * 20 19 5 27 27 H 1.08999 * 109.47490 * 299.89273 * 1 2 3 28 28 H 1.08998 * 109.46942 * 59.89601 * 1 2 3 29 29 H 1.09003 * 109.46818 * 179.89442 * 1 2 3 30 30 H 1.09006 * 109.60837 * 68.05763 * 4 2 1 31 31 H 1.08999 * 109.52006 * 307.66857 * 4 2 1 32 32 H 1.09005 * 109.47123 * 59.99668 * 9 6 5 33 33 H 1.09002 * 109.47309 * 299.99670 * 9 6 5 34 34 H 1.09005 * 109.46767 * 60.00050 * 10 9 6 35 35 H 1.09002 * 109.47113 * 300.00390 * 10 9 6 36 36 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 37 37 H 1.09001 * 109.68403 * 69.54712 * 19 5 4 38 38 H 1.08994 * 109.68510 * 190.07457 * 19 5 4 39 39 H 1.08996 * 109.54457 * 296.63362 * 21 20 19 40 40 H 1.09003 * 109.54314 * 56.89679 * 21 20 19 41 41 H 1.09003 * 109.51944 * 183.23434 * 22 21 20 42 42 H 1.08998 * 109.57803 * 63.07743 * 22 21 20 43 43 H 1.08999 * 109.47459 * 297.63425 * 23 22 21 44 44 H 1.09000 * 109.48049 * 177.62293 * 23 22 21 45 45 H 1.08998 * 109.48258 * 301.07576 * 25 24 23 46 46 H 1.08997 * 109.49437 * 181.04473 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0425 -0.7208 -1.2470 5 7 3.5013 -0.8765 -1.1340 6 16 4.5060 -0.4185 -2.3683 7 8 5.7371 -0.1188 -1.7253 8 8 3.7766 0.5865 -3.0592 9 6 4.6693 -1.9054 -3.3945 10 6 5.5849 -1.6066 -4.5833 11 6 5.7210 -2.8421 -5.4354 12 1 5.2056 -3.7495 -5.1572 13 6 6.5035 -2.8140 -6.5704 14 7 6.6219 -3.8920 -7.3143 15 14 7.3954 -1.2447 -7.0512 16 1 6.5224 -0.4297 -7.9337 17 1 7.7261 -0.4689 -5.8289 18 1 8.6468 -1.5880 -7.7733 19 6 4.0416 -1.4458 0.1110 20 6 3.4304 -0.6875 1.2936 21 6 3.8223 -1.3804 2.6011 22 6 3.2745 -0.5694 3.7798 23 6 3.8085 0.8628 3.6956 24 8 3.4327 1.4378 2.4425 25 6 3.9561 0.7494 1.3046 26 8 2.0076 -0.6761 1.1659 27 1 -0.3634 0.5121 0.8909 28 1 -0.3633 0.5154 -0.8890 29 1 -0.3633 -1.0277 -0.0019 30 1 1.8037 -0.1330 -2.1334 31 1 1.5732 -1.7019 -1.3193 32 1 3.6867 -2.2048 -3.7593 33 1 5.0973 -2.7123 -2.7996 34 1 6.5675 -1.3070 -4.2188 35 1 5.1565 -0.7999 -5.1781 36 1 7.1721 -3.8721 -8.1129 37 1 3.7785 -2.5016 0.1765 38 1 5.1259 -1.3361 0.1247 39 1 3.4001 -2.3850 2.6222 40 1 4.9085 -1.4384 2.6718 41 1 3.5976 -1.0242 4.7162 42 1 2.1854 -0.5551 3.7385 43 1 4.8953 0.8509 3.7786 44 1 3.3885 1.4558 4.5080 45 1 5.0448 0.7378 1.3558 46 1 3.6405 1.2589 0.3942 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000373678661.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:45 Heat of formation + Delta-G solvation = -162.438605 kcal Electronic energy + Delta-G solvation = -28865.839606 eV Core-core repulsion = 24882.804684 eV Total energy + Delta-G solvation = -3983.034922 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.80311 -38.10720 -36.91826 -35.71990 -34.89451 -34.30679 -33.99969 -32.34537 -31.53188 -30.14263 -27.17221 -26.08549 -25.51357 -25.19568 -22.86357 -21.46943 -21.12570 -19.92240 -18.71488 -17.84617 -17.13382 -17.04554 -16.65186 -16.23173 -15.77405 -15.58827 -15.33162 -14.97678 -14.89988 -14.51337 -14.22637 -13.99073 -13.69392 -13.36926 -12.97028 -12.88191 -12.84524 -12.60351 -12.35124 -12.32676 -12.08541 -11.95264 -11.85083 -11.81669 -11.47571 -11.35379 -11.33027 -11.30292 -11.26763 -10.78683 -10.52168 -10.47611 -10.29779 -10.19306 -9.81191 -9.57439 -9.40991 -8.72513 -8.70268 -6.20463 -4.22148 0.49615 2.72066 3.23318 3.30843 3.34302 3.34470 3.67351 4.06125 4.22504 4.32045 4.33483 4.42862 4.53870 4.63193 4.66737 4.72598 4.91936 4.99440 5.09124 5.10465 5.10975 5.20604 5.27813 5.31682 5.40709 5.43431 5.44931 5.48274 5.52841 5.57520 5.59451 5.65966 5.73067 5.83159 5.93416 5.98395 6.06671 6.21423 6.36895 6.75374 6.87269 6.87768 7.12663 7.50033 8.32320 8.80408 9.38906 10.91879 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.021850 B = 0.003298 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.159472 B = 8488.386964 C = 8797.179928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.074 3.926 3 H 0.068 0.932 4 C 0.087 3.913 5 N -1.008 6.008 6 S 2.583 3.417 7 O -0.961 6.961 8 O -0.960 6.960 9 C -0.579 4.579 10 C -0.007 4.007 11 C -0.521 4.521 12 H 0.078 0.922 13 C 0.072 3.928 14 N -0.895 5.895 15 Si 0.869 3.131 16 H -0.271 1.271 17 H -0.262 1.262 18 H -0.281 1.281 19 C 0.095 3.905 20 C 0.081 3.919 21 C -0.108 4.108 22 C -0.150 4.150 23 C 0.057 3.943 24 O -0.372 6.372 25 C 0.036 3.964 26 O -0.354 6.354 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.105 0.895 31 H 0.077 0.923 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.032 0.968 35 H 0.028 0.972 36 H 0.267 0.733 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.049 0.951 44 H 0.093 0.907 45 H 0.067 0.933 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.614 6.193 21.847 24.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.014 3.986 3 H 0.086 0.914 4 C -0.039 4.039 5 N -0.845 5.845 6 S 2.683 3.317 7 O -0.952 6.952 8 O -0.951 6.951 9 C -0.713 4.713 10 C -0.046 4.046 11 C -0.560 4.560 12 H 0.096 0.904 13 C -0.131 4.131 14 N -0.532 5.532 15 Si 0.695 3.305 16 H -0.196 1.196 17 H -0.187 1.187 18 H -0.207 1.207 19 C -0.031 4.031 20 C 0.039 3.961 21 C -0.146 4.146 22 C -0.188 4.188 23 C -0.020 4.020 24 O -0.291 6.291 25 C -0.042 4.042 26 O -0.273 6.273 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.123 0.877 31 H 0.095 0.905 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.050 0.950 35 H 0.046 0.954 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.123 0.877 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.092 0.908 42 H 0.098 0.902 43 H 0.068 0.932 44 H 0.111 0.889 45 H 0.085 0.915 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.391 7.082 21.710 24.691 hybrid contribution 0.686 -0.229 -0.754 1.044 sum -8.705 6.853 20.956 23.705 Atomic orbital electron populations 1.21707 0.92196 1.03080 1.02881 1.22359 0.95336 0.96008 0.84849 0.91400 1.22124 0.79539 1.02086 1.00125 1.58036 1.16841 1.80171 1.29423 1.05907 0.73417 0.78061 0.74355 1.93536 1.44024 1.83849 1.73746 1.93542 1.72036 1.55344 1.74152 1.30320 1.10259 1.18223 1.12475 1.19420 0.93724 0.99782 0.91696 1.20837 1.30739 0.96551 1.07837 0.90392 1.24988 0.95866 0.96330 0.95885 1.69880 1.39574 1.28117 1.15672 0.86928 0.79956 0.84001 0.79597 1.19611 1.18654 1.20668 1.22057 1.00000 0.98020 0.82994 1.22276 0.82845 0.95682 0.95301 1.21567 1.01233 0.99784 0.91975 1.22112 1.02688 0.95899 0.98100 1.22618 0.98829 0.94037 0.86503 1.87964 1.74793 1.52768 1.13543 1.23169 0.98642 0.92506 0.89837 1.87946 1.19147 1.77034 1.43203 0.91497 0.90661 0.91631 0.87720 0.90485 0.85589 0.85599 0.94960 0.95400 0.92321 0.90064 0.87689 0.90118 0.89978 0.90810 0.90165 0.93231 0.88917 0.91511 0.88474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.57 37.16 0.36 -0.85 16 2 C 0.07 0.81 3.00 -26.79 -0.08 0.73 16 3 H 0.07 0.82 6.21 -51.93 -0.32 0.50 16 4 C 0.09 0.99 5.93 -3.75 -0.02 0.97 16 5 N -1.01 -13.11 2.85 -113.34 -0.32 -13.43 16 6 S 2.58 43.19 5.47 -107.50 -0.59 42.60 16 7 O -0.96 -17.94 16.62 -57.54 -0.96 -18.90 16 8 O -0.96 -18.20 16.61 -57.54 -0.96 -19.16 16 9 C -0.58 -10.47 6.12 37.16 0.23 -10.24 16 10 C -0.01 -0.16 4.05 -27.88 -0.11 -0.27 16 11 C -0.52 -14.44 9.66 -34.44 -0.33 -14.77 16 12 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 13 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 14 N -0.89 -26.87 13.96 55.43 0.77 -26.10 16 15 Si 0.87 21.31 27.47 -169.99 -4.67 16.64 16 16 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 C 0.10 1.08 5.34 -3.57 -0.02 1.06 16 20 C 0.08 0.88 0.71 -90.48 -0.06 0.81 16 21 C -0.11 -0.91 5.03 -26.59 -0.13 -1.05 16 22 C -0.15 -1.19 5.98 -26.58 -0.16 -1.35 16 23 C 0.06 0.50 6.84 37.20 0.25 0.75 16 24 O -0.37 -4.53 10.70 -42.41 -0.45 -4.98 16 25 C 0.04 0.43 5.10 37.16 0.19 0.62 16 26 O -0.35 -4.10 9.31 -42.41 -0.39 -4.49 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.10 1.21 6.88 -51.93 -0.36 0.85 16 31 H 0.08 0.76 8.13 -51.93 -0.42 0.34 16 32 H 0.13 2.08 8.14 -51.92 -0.42 1.66 16 33 H 0.13 2.07 8.14 -51.92 -0.42 1.64 16 34 H 0.03 0.76 7.20 -51.93 -0.37 0.38 16 35 H 0.03 0.65 7.57 -51.93 -0.39 0.25 16 36 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.10 1.18 6.87 -51.93 -0.36 0.82 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.73 7.84 -51.93 -0.41 0.33 16 43 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.10 1.30 6.06 -51.93 -0.31 0.99 16 LS Contribution 367.31 15.07 5.54 5.54 Total: -1.00 -34.10 367.31 -9.63 -43.73 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -7.61 Total: 0.17 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: 0.00 Total: -21.62 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: 0.45 Total: -39.53 kcal Atomic # 8 Polarization: -44.77 SS G_CDS: -2.76 Total: -47.53 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Atomic # 16 Polarization: 43.19 SS G_CDS: -0.59 Total: 42.60 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.10 -9.63 -43.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373678661.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.709 kcal (2) G-P(sol) polarization free energy of solvation -34.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds