Wall clock time and date at job start Tue Mar 31 2020 17:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.56082 * 2 1 4 4 C 1.53298 * 109.51356 * 120.13494 * 2 1 3 5 5 N 1.47153 * 108.41084 * 172.27173 * 4 2 1 6 6 S 1.65602 * 120.98809 * 129.46186 * 5 4 2 7 7 O 1.42102 * 104.27307 * 206.06887 * 6 5 4 8 8 O 1.42095 * 104.27541 * 333.92200 * 6 5 4 9 9 C 1.81392 * 104.45218 * 89.99897 * 6 5 4 10 10 C 1.52998 * 109.47083 * 180.02562 * 9 6 5 11 11 C 1.50711 * 109.47119 * 179.97438 * 10 9 6 12 12 H 1.07995 * 119.99655 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99850 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00247 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99717 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47401 * 90.00021 * 15 13 11 17 17 H 1.48500 * 109.46977 * 209.99964 * 15 13 11 18 18 H 1.48503 * 109.47229 * 329.99540 * 15 13 11 19 19 C 1.47179 * 118.02402 * 309.43604 * 5 4 2 20 20 C 1.53185 * 108.38081 * 50.39899 * 19 5 4 21 21 C 1.53096 * 109.43307 * 67.89138 * 20 19 5 22 22 C 1.53199 * 109.01710 * 176.83259 * 21 20 19 23 23 C 1.53085 * 109.15409 * 303.12578 * 22 21 20 24 24 O 1.42904 * 109.45694 * 57.61866 * 23 22 21 25 25 C 1.42928 * 114.08715 * 298.83559 * 24 23 22 26 26 O 1.42867 * 109.41500 * 307.86353 * 20 19 5 27 27 H 1.09000 * 109.47204 * 180.13193 * 1 2 3 28 28 H 1.09000 * 109.47287 * 300.13495 * 1 2 3 29 29 H 1.09005 * 109.47191 * 60.13182 * 1 2 3 30 30 H 1.09002 * 109.67581 * 291.99576 * 4 2 1 31 31 H 1.08990 * 109.67986 * 52.50603 * 4 2 1 32 32 H 1.09009 * 109.47134 * 299.99513 * 9 6 5 33 33 H 1.08998 * 109.47464 * 59.99671 * 9 6 5 34 34 H 1.09004 * 109.46927 * 299.99008 * 10 9 6 35 35 H 1.08998 * 109.47444 * 59.99408 * 10 9 6 36 36 H 0.96997 * 119.99759 * 180.02562 * 14 13 11 37 37 H 1.09001 * 109.67617 * 290.68334 * 19 5 4 38 38 H 1.08994 * 109.68331 * 170.13016 * 19 5 4 39 39 H 1.08997 * 109.54478 * 296.69617 * 21 20 19 40 40 H 1.08999 * 109.54679 * 56.97532 * 21 20 19 41 41 H 1.09001 * 109.52186 * 63.03002 * 22 21 20 42 42 H 1.08997 * 109.52236 * 183.22131 * 22 21 20 43 43 H 1.09000 * 109.47241 * 297.62349 * 23 22 21 44 44 H 1.08992 * 109.47393 * 177.61501 * 23 22 21 45 45 H 1.09000 * 109.48129 * 301.07075 * 25 24 23 46 46 H 1.09000 * 109.48373 * 181.02083 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8949 1.0271 0.0000 4 6 2.0420 -0.7254 1.2496 5 7 3.5013 -0.8757 1.1346 6 16 4.5055 -0.4181 2.3692 7 8 5.7370 -0.1185 1.7265 8 8 3.7762 0.5870 3.0599 9 6 4.6683 -1.9051 3.3952 10 6 5.5836 -1.6066 4.5843 11 6 5.7183 -2.8419 5.4371 12 1 5.2024 -3.7489 5.1589 13 6 6.5002 -2.8140 6.5723 14 7 7.1289 -1.7095 6.9108 15 14 6.6666 -4.3449 7.6296 16 1 7.8202 -5.1510 7.1555 17 1 6.8877 -3.9483 9.0435 18 1 5.4243 -5.1524 7.5305 19 6 4.0417 -1.4453 -0.1103 20 6 3.4304 -0.6882 -1.2933 21 6 3.9554 0.7499 -1.3037 22 6 3.4009 1.4749 -2.5341 23 6 3.7962 0.7003 -3.7940 24 8 3.3017 -0.6375 -3.7051 25 6 3.8227 -1.3797 -2.6004 26 8 2.0075 -0.6765 -1.1655 27 1 -0.3633 -1.0277 0.0024 28 1 -0.3634 0.5159 0.8888 29 1 -0.3634 0.5118 -0.8912 30 1 1.8022 -0.1405 2.1376 31 1 1.5758 -1.7080 1.3205 32 1 3.6856 -2.2044 3.7598 33 1 5.0963 -2.7119 2.8003 34 1 6.5664 -1.3072 4.2202 35 1 5.1552 -0.7999 5.1791 36 1 7.6793 -1.6900 7.7093 37 1 3.7791 -2.5012 -0.1750 38 1 5.1260 -1.3347 -0.1242 39 1 3.6289 1.2639 -0.3996 40 1 5.0445 0.7403 -1.3462 41 1 2.3144 1.5294 -2.4659 42 1 3.8149 2.4821 -2.5808 43 1 4.8824 0.6811 -3.8829 44 1 3.3686 1.1884 -4.6697 45 1 4.9092 -1.4276 -2.6746 46 1 3.4122 -2.3894 -2.6148 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000373678663.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:50 Heat of formation + Delta-G solvation = -191.364471 kcal Electronic energy + Delta-G solvation = -28785.692227 eV Core-core repulsion = 24801.402986 eV Total energy + Delta-G solvation = -3984.289242 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.62693 -38.98456 -38.31032 -37.10915 -35.94586 -35.84041 -34.69832 -33.44077 -33.16233 -30.95405 -27.96305 -27.64433 -26.38921 -25.99412 -23.57884 -23.38574 -22.47531 -20.61443 -19.92058 -19.20344 -18.44979 -17.88644 -17.63047 -17.18144 -16.90567 -16.76290 -16.52563 -16.19250 -16.00825 -15.84551 -15.40228 -15.15082 -14.73339 -14.47699 -13.98784 -13.88343 -13.77375 -13.64062 -13.51297 -13.34489 -13.26300 -13.20128 -12.95579 -12.91322 -12.82302 -12.73243 -12.63654 -12.29155 -12.16785 -12.10778 -11.93354 -11.77817 -11.70705 -11.26189 -11.21765 -11.00428 -10.67148 -10.39225 -9.74786 -8.28512 -6.43029 -0.82200 1.39931 1.41632 1.52786 1.58824 2.36276 2.51228 2.75886 2.98038 3.04853 3.08728 3.46873 3.58388 3.71891 3.74350 3.88257 3.95913 4.04061 4.05593 4.12780 4.20841 4.33487 4.35611 4.42672 4.46540 4.62780 4.65110 4.69781 4.72673 4.74761 4.79141 4.88035 4.93160 4.99051 5.05633 5.14643 5.21193 5.22812 5.24861 5.30492 5.43785 5.65417 6.02825 6.15260 6.30318 6.70468 7.27523 8.83709 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.021866 B = 0.003098 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.243894 B = 9037.279658 C = 9308.038281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.071 3.929 3 H 0.054 0.946 4 C 0.081 3.919 5 N -0.997 5.997 6 S 2.610 3.390 7 O -0.986 6.986 8 O -0.991 6.991 9 C -0.586 4.586 10 C 0.021 3.979 11 C -0.540 4.540 12 H 0.076 0.924 13 C -0.003 4.003 14 N -0.934 5.934 15 Si 0.974 3.026 16 H -0.270 1.270 17 H -0.283 1.283 18 H -0.258 1.258 19 C 0.087 3.913 20 C 0.079 3.921 21 C -0.157 4.157 22 C -0.146 4.146 23 C 0.057 3.943 24 O -0.387 6.387 25 C 0.077 3.923 26 O -0.357 6.357 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.140 0.860 33 H 0.142 0.858 34 H 0.007 0.993 35 H 0.005 0.995 36 H 0.268 0.732 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.054 0.946 40 H 0.078 0.922 41 H 0.066 0.934 42 H 0.084 0.916 43 H 0.061 0.939 44 H 0.109 0.891 45 H 0.086 0.914 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.590 1.051 -20.922 23.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.012 3.988 3 H 0.072 0.928 4 C -0.044 4.044 5 N -0.836 5.836 6 S 2.709 3.291 7 O -0.976 6.976 8 O -0.981 6.981 9 C -0.719 4.719 10 C -0.018 4.018 11 C -0.579 4.579 12 H 0.094 0.906 13 C -0.202 4.202 14 N -0.573 5.573 15 Si 0.798 3.202 16 H -0.195 1.195 17 H -0.208 1.208 18 H -0.181 1.181 19 C -0.039 4.039 20 C 0.037 3.963 21 C -0.195 4.195 22 C -0.183 4.183 23 C -0.019 4.019 24 O -0.305 6.305 25 C 0.000 4.000 26 O -0.276 6.276 27 H 0.092 0.908 28 H 0.104 0.896 29 H 0.087 0.913 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.158 0.842 33 H 0.160 0.840 34 H 0.025 0.975 35 H 0.024 0.976 36 H 0.077 0.923 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.072 0.928 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.102 0.898 43 H 0.080 0.920 44 H 0.127 0.873 45 H 0.104 0.896 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -11.359 1.855 -20.972 23.923 hybrid contribution 0.716 -0.532 1.639 1.866 sum -10.643 1.323 -19.333 22.109 Atomic orbital electron populations 1.21721 0.90347 1.03916 1.03490 1.22515 0.96628 0.95101 0.84569 0.92811 1.22431 0.78376 1.03309 1.00291 1.57657 1.17091 1.80196 1.28624 1.04845 0.72903 0.77201 0.74107 1.93485 1.45797 1.84122 1.74229 1.93485 1.72684 1.56559 1.75389 1.30388 1.10005 1.19824 1.11641 1.18825 0.93175 0.98110 0.91702 1.21508 1.29904 0.97718 1.08804 0.90612 1.26125 0.94860 0.99981 0.99223 1.70099 1.31546 1.29173 1.26512 0.85305 0.79245 0.78420 0.77256 1.19497 1.20807 1.18138 1.22286 1.00033 0.99196 0.82356 1.22434 0.82395 0.95382 0.96085 1.22239 1.01702 0.96283 0.99244 1.22078 1.01792 0.99898 0.94567 1.22735 0.99083 0.82212 0.97887 1.87954 1.70084 1.25346 1.47143 1.22658 0.99431 0.95807 0.82120 1.88003 1.19552 1.76996 1.43096 0.90782 0.89556 0.91308 0.88394 0.88264 0.84168 0.83979 0.97508 0.97639 0.92333 0.87747 0.87979 0.92776 0.90368 0.91519 0.89762 0.92029 0.87326 0.89570 0.86637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.57 71.98 0.69 -1.42 16 2 C 0.07 1.48 3.02 30.69 0.09 1.57 16 3 H 0.05 1.25 6.19 -2.39 -0.01 1.23 16 4 C 0.08 1.79 5.96 86.35 0.51 2.31 16 5 N -1.00 -25.92 2.86 -511.76 -1.46 -27.38 16 6 S 2.61 93.01 5.47 -56.49 -0.31 92.70 16 7 O -0.99 -39.79 16.62 -127.65 -2.12 -41.92 16 8 O -0.99 -40.89 16.62 -127.65 -2.12 -43.02 16 9 C -0.59 -22.02 6.12 71.98 0.44 -21.58 16 10 C 0.02 1.08 4.98 29.85 0.15 1.23 16 11 C -0.54 -29.81 9.11 25.60 0.23 -29.57 16 12 H 0.08 3.85 7.74 -2.91 -0.02 3.83 16 13 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 14 N -0.93 -56.56 13.29 21.45 0.28 -56.27 16 15 Si 0.97 42.90 29.54 68.60 2.03 44.93 16 16 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 17 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 18 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 19 C 0.09 1.87 5.34 86.31 0.46 2.33 16 20 C 0.08 1.64 0.71 -10.70 -0.01 1.63 16 21 C -0.16 -3.51 4.34 30.69 0.13 -3.37 16 22 C -0.15 -2.64 5.98 30.69 0.18 -2.45 16 23 C 0.06 0.91 6.84 72.01 0.49 1.40 16 24 O -0.39 -7.74 10.70 -142.07 -1.52 -9.26 16 25 C 0.08 1.33 5.81 71.98 0.42 1.75 16 26 O -0.36 -7.88 9.30 -142.07 -1.32 -9.20 16 27 H 0.07 1.03 8.14 -2.39 -0.02 1.02 16 28 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.10 2.29 6.88 -2.39 -0.02 2.28 16 31 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.14 4.63 8.14 -2.39 -0.02 4.61 16 33 H 0.14 4.63 8.14 -2.39 -0.02 4.61 16 34 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 35 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 37 H 0.10 1.72 8.14 -2.39 -0.02 1.71 16 38 H 0.10 2.28 6.87 -2.39 -0.02 2.27 16 39 H 0.05 1.41 6.04 -2.39 -0.01 1.40 16 40 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.07 1.32 7.84 -2.39 -0.02 1.30 16 42 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -75.06 370.92 -1.33 -76.39 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: 0.96 Total: 18.92 kcal Atomic # 6 Polarization: -50.16 SS G_CDS: 4.26 Total: -45.90 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -1.18 Total: -83.66 kcal Atomic # 8 Polarization: -96.30 SS G_CDS: -7.08 Total: -103.39 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 16 Polarization: 93.01 SS G_CDS: -0.31 Total: 92.70 kcal Total: -75.06 -1.33 -76.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373678663.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.976 kcal (2) G-P(sol) polarization free energy of solvation -75.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds