Wall clock time and date at job start Tue Mar 31 2020 17:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.51251 * 2 1 4 4 C 1.52837 * 109.58645 * 239.99190 * 2 1 3 5 5 N 1.47162 * 108.77094 * 187.41482 * 4 2 1 6 6 S 1.65598 * 121.05438 * 230.98701 * 5 4 2 7 7 O 1.42095 * 104.28128 * 153.64867 * 6 5 4 8 8 O 1.42104 * 104.27651 * 25.79278 * 6 5 4 9 9 C 1.81399 * 104.45041 * 269.72469 * 6 5 4 10 10 C 1.52997 * 109.47147 * 179.97438 * 9 6 5 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 6 12 12 C 1.50698 * 109.47184 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99819 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00046 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00192 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47261 * 60.00310 * 16 14 12 19 19 H 1.48500 * 109.47454 * 300.00304 * 16 14 12 20 20 C 1.47282 * 117.89505 * 50.71958 * 5 4 2 21 21 C 1.52655 * 108.38605 * 310.70462 * 20 5 4 22 22 C 1.53983 * 110.13468 * 288.24957 * 21 20 5 23 23 C 1.54609 * 103.87337 * 241.76506 * 22 21 20 24 24 O 1.44478 * 104.82158 * 336.10645 * 23 22 21 25 25 C 1.44548 * 105.36978 * 40.15407 * 24 23 22 26 26 O 1.42210 * 110.83655 * 50.72411 * 21 20 5 27 27 H 1.08999 * 109.47208 * 299.90102 * 1 2 3 28 28 H 1.09002 * 109.46876 * 59.89752 * 1 2 3 29 29 H 1.08999 * 109.47422 * 179.89903 * 1 2 3 30 30 H 1.08994 * 109.55433 * 67.59735 * 4 2 1 31 31 H 1.08998 * 109.45518 * 307.16760 * 4 2 1 32 32 H 1.09001 * 109.47190 * 59.99892 * 9 6 5 33 33 H 1.09004 * 109.47089 * 299.99759 * 9 6 5 34 34 H 1.09001 * 109.46832 * 60.00079 * 10 9 6 35 35 H 1.09001 * 109.47502 * 299.99601 * 10 9 6 36 36 H 1.09001 * 109.47002 * 60.00426 * 11 10 9 37 37 H 1.08993 * 109.46955 * 299.99989 * 11 10 9 38 38 H 0.97001 * 119.99934 * 359.97438 * 15 14 12 39 39 H 1.09001 * 109.68584 * 70.42914 * 20 5 4 40 40 H 1.09001 * 109.68513 * 190.98304 * 20 5 4 41 41 H 1.09009 * 110.54522 * 0.36008 * 22 21 20 42 42 H 1.08995 * 110.54616 * 123.02003 * 22 21 20 43 43 H 1.09000 * 110.37078 * 94.93930 * 23 22 21 44 44 H 1.08999 * 110.36398 * 217.15948 * 23 22 21 45 45 H 1.09002 * 110.39528 * 201.22141 * 25 24 23 46 46 H 1.08995 * 110.39495 * 78.82891 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0423 -0.7201 -1.2469 5 7 3.5028 -0.8673 -1.1422 6 16 4.4996 -0.3964 -2.3779 7 8 5.7317 -0.0932 -1.7383 8 8 3.7616 0.6083 -3.0600 9 6 4.6672 -1.8764 -3.4133 10 6 5.5761 -1.5655 -4.6042 11 6 5.7180 -2.8140 -5.4771 12 6 6.6128 -2.5076 -6.6504 13 1 7.0380 -1.5211 -6.7620 14 6 6.8893 -3.4868 -7.5808 15 7 6.3719 -4.6882 -7.4446 16 14 7.9989 -3.1072 -9.0347 17 1 8.1366 -4.3189 -9.8821 18 1 9.3370 -2.6930 -8.5414 19 1 7.4051 -2.0076 -9.8369 20 6 4.0504 -1.4412 0.0988 21 6 3.4247 -0.7105 1.2841 22 6 3.9897 0.7185 1.3841 23 6 4.6913 0.7441 2.7616 24 8 4.0384 -0.2918 3.5283 25 6 3.8399 -1.3852 2.6039 26 8 2.0079 -0.6764 1.1667 27 1 -0.3633 0.5123 0.8909 28 1 -0.3633 0.5154 -0.8891 29 1 -0.3634 -1.0276 -0.0018 30 1 1.7959 -0.1354 -2.1331 31 1 1.5791 -1.7045 -1.3138 32 1 3.6850 -2.1794 -3.7758 33 1 5.1024 -2.6842 -2.8248 34 1 6.5585 -1.2623 -4.2420 35 1 5.1406 -0.7579 -5.1926 36 1 4.7358 -3.1177 -5.8393 37 1 6.1538 -3.6213 -4.8885 38 1 5.7960 -4.8855 -6.6894 39 1 3.8066 -2.5023 0.1515 40 1 5.1325 -1.3113 0.1172 41 1 4.7082 0.9025 0.5853 42 1 3.1840 1.4517 1.3489 43 1 5.7527 0.5223 2.6510 44 1 4.5550 1.7146 3.2387 45 1 3.0475 -2.0440 2.9592 46 1 4.7669 -1.9426 2.4702 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000373684010.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:54 Heat of formation + Delta-G solvation = -169.269027 kcal Electronic energy + Delta-G solvation = -28186.199708 eV Core-core repulsion = 24202.868597 eV Total energy + Delta-G solvation = -3983.331111 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.95634 -38.30020 -37.19007 -36.00250 -35.18590 -34.99249 -33.59421 -32.35297 -30.97484 -29.46421 -27.56860 -27.03834 -25.13819 -23.46606 -23.35359 -22.30965 -21.01443 -20.03516 -18.93393 -17.96897 -17.60800 -17.07599 -16.72728 -16.48971 -15.94116 -15.81150 -15.57704 -15.08424 -14.76315 -14.52436 -14.26454 -14.12686 -13.78365 -13.37656 -13.07094 -13.03553 -12.73296 -12.62214 -12.29121 -12.17950 -12.14440 -12.01936 -11.98747 -11.84313 -11.77803 -11.66803 -11.55403 -11.32591 -10.91614 -10.84963 -10.69778 -10.47378 -10.17566 -10.17288 -10.10208 -9.84948 -9.06869 -8.62776 -8.41721 -6.45485 -4.15794 0.18540 2.44373 3.11383 3.40562 3.42095 3.59285 3.60841 3.77146 3.94767 4.16283 4.25883 4.40332 4.43820 4.48047 4.56668 4.73255 4.76516 4.89138 4.94860 4.97432 4.98000 5.01731 5.12581 5.20106 5.31776 5.32493 5.37808 5.39504 5.40862 5.49904 5.52418 5.65340 5.68235 5.74561 5.84545 6.02352 6.15969 6.22063 6.38252 6.63271 6.87484 7.19808 7.31739 8.07584 8.36023 8.77923 9.56643 10.95228 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.021661 B = 0.002725 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.352065 B =10272.620451 C =10697.219161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.074 3.926 3 H 0.067 0.933 4 C 0.087 3.913 5 N -1.006 6.006 6 S 2.596 3.404 7 O -0.956 6.956 8 O -0.955 6.955 9 C -0.609 4.609 10 C -0.099 4.099 11 C 0.018 3.982 12 C -0.609 4.609 13 H 0.052 0.948 14 C 0.016 3.984 15 N -0.911 5.911 16 Si 1.069 2.931 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.287 1.287 20 C 0.098 3.902 21 C 0.081 3.919 22 C -0.185 4.185 23 C 0.047 3.953 24 O -0.369 6.369 25 C 0.062 3.938 26 O -0.356 6.356 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.106 0.894 31 H 0.078 0.922 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.012 0.988 37 H 0.012 0.988 38 H 0.268 0.732 39 H 0.081 0.919 40 H 0.108 0.892 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.066 0.934 44 H 0.094 0.906 45 H 0.106 0.894 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.041 8.041 20.335 24.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.016 3.984 3 H 0.085 0.915 4 C -0.039 4.039 5 N -0.843 5.843 6 S 2.695 3.305 7 O -0.946 6.946 8 O -0.946 6.946 9 C -0.741 4.741 10 C -0.138 4.138 11 C -0.020 4.020 12 C -0.647 4.647 13 H 0.070 0.930 14 C -0.188 4.188 15 N -0.547 5.547 16 Si 0.897 3.103 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.213 1.213 20 C -0.028 4.028 21 C 0.039 3.961 22 C -0.223 4.223 23 C -0.030 4.030 24 O -0.287 6.287 25 C -0.016 4.016 26 O -0.275 6.275 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.124 0.876 31 H 0.097 0.903 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.030 0.970 37 H 0.030 0.970 38 H 0.078 0.922 39 H 0.099 0.901 40 H 0.126 0.874 41 H 0.109 0.891 42 H 0.104 0.896 43 H 0.084 0.916 44 H 0.112 0.888 45 H 0.124 0.876 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.177 8.187 19.244 22.838 hybrid contribution -0.674 0.075 0.777 1.032 sum -9.851 8.262 20.021 23.794 Atomic orbital electron populations 1.21739 0.91925 1.03388 1.03052 1.22385 0.95445 0.95857 0.84753 0.91500 1.22115 0.79365 1.02202 1.00178 1.58022 1.16794 1.79940 1.29531 1.05518 0.73466 0.77376 0.74187 1.93556 1.44083 1.83373 1.73638 1.93564 1.71684 1.54714 1.74610 1.30606 1.10266 1.20009 1.13232 1.21376 0.96671 1.02698 0.93068 1.19181 0.97003 0.91535 0.94312 1.22061 1.32582 1.00062 1.09977 0.92988 1.25897 0.98435 0.93128 1.01316 1.70801 1.30896 1.21089 1.31891 0.83536 0.75650 0.75727 0.75370 1.20676 1.21289 1.21299 1.22026 0.99826 0.97998 0.82968 1.22659 0.82654 0.95146 0.95668 1.23602 1.01939 0.97439 0.99333 1.23423 0.96464 0.92613 0.90453 1.89184 1.79936 1.26214 1.33401 1.23299 1.01392 0.90316 0.86581 1.87878 1.19032 1.77543 1.43058 0.91365 0.90475 0.91404 0.87614 0.90329 0.85420 0.85430 0.91400 0.91407 0.97021 0.97013 0.92158 0.90076 0.87420 0.89128 0.89618 0.91571 0.88785 0.87563 0.90168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.57 37.16 0.36 -0.66 16 2 C 0.07 0.69 3.10 -26.82 -0.08 0.61 16 3 H 0.07 0.65 6.50 -51.93 -0.34 0.31 16 4 C 0.09 0.84 5.91 -3.76 -0.02 0.82 16 5 N -1.01 -11.10 3.17 -113.58 -0.36 -11.46 16 6 S 2.60 36.87 5.48 -107.50 -0.59 36.28 16 7 O -0.96 -15.56 16.62 -57.54 -0.96 -16.52 16 8 O -0.96 -15.91 16.62 -57.54 -0.96 -16.87 16 9 C -0.61 -9.12 6.18 37.16 0.23 -8.89 16 10 C -0.10 -1.98 5.16 -26.73 -0.14 -2.12 16 11 C 0.02 0.45 4.28 -27.88 -0.12 0.33 16 12 C -0.61 -17.25 9.11 -34.44 -0.31 -17.56 16 13 H 0.05 1.44 7.74 -52.48 -0.41 1.04 16 14 C 0.02 0.46 5.46 -17.82 -0.10 0.37 16 15 N -0.91 -27.59 13.65 55.43 0.76 -26.83 16 16 Si 1.07 25.09 29.90 -169.99 -5.08 20.00 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 20 C 0.10 0.94 5.01 -3.79 -0.02 0.92 16 21 C 0.08 0.79 1.05 -89.80 -0.09 0.69 16 22 C -0.19 -1.84 5.77 -25.37 -0.15 -1.98 16 23 C 0.05 0.42 7.65 38.00 0.29 0.71 16 24 O -0.37 -3.94 11.65 -35.23 -0.41 -4.35 16 25 C 0.06 0.54 6.93 37.64 0.26 0.80 16 26 O -0.36 -3.71 9.84 -35.23 -0.35 -4.06 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.11 1.02 6.88 -51.93 -0.36 0.66 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.13 1.71 8.14 -51.92 -0.42 1.28 16 33 H 0.13 1.69 8.14 -51.92 -0.42 1.27 16 34 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 36 H 0.01 0.30 8.01 -51.93 -0.42 -0.12 16 37 H 0.01 0.30 8.01 -51.93 -0.42 -0.12 16 38 H 0.27 8.01 7.22 -40.82 -0.29 7.72 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.11 1.03 6.80 -51.93 -0.35 0.68 16 41 H 0.09 0.99 7.67 -51.92 -0.40 0.59 16 42 H 0.09 0.84 6.62 -51.93 -0.34 0.50 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.11 0.85 8.08 -51.93 -0.42 0.43 16 46 H 0.08 0.55 7.84 -51.93 -0.41 0.14 16 LS Contribution 374.35 15.07 5.64 5.64 Total: -1.00 -35.37 374.35 -9.80 -45.16 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -7.60 Total: -1.03 kcal Atomic # 6 Polarization: -26.07 SS G_CDS: 0.10 Total: -25.97 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.40 Total: -38.29 kcal Atomic # 8 Polarization: -39.12 SS G_CDS: -2.67 Total: -41.79 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -5.08 Total: 20.00 kcal Atomic # 16 Polarization: 36.87 SS G_CDS: -0.59 Total: 36.28 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.37 -9.80 -45.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373684010.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.107 kcal (2) G-P(sol) polarization free energy of solvation -35.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds