Wall clock time and date at job start Tue Mar 31 2020 17:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.51251 * 2 1 4 4 C 1.52837 * 109.58645 * 239.99190 * 2 1 3 5 5 N 1.47162 * 108.77094 * 187.41482 * 4 2 1 6 6 S 1.65598 * 121.05438 * 230.98701 * 5 4 2 7 7 O 1.42095 * 104.28128 * 153.64867 * 6 5 4 8 8 O 1.42104 * 104.27651 * 25.79278 * 6 5 4 9 9 C 1.81399 * 104.45041 * 269.72469 * 6 5 4 10 10 C 1.52997 * 109.47147 * 179.97438 * 9 6 5 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 6 12 12 C 1.50698 * 109.47184 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99819 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00046 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00192 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47261 * 60.00310 * 16 14 12 19 19 H 1.48500 * 109.47454 * 300.00304 * 16 14 12 20 20 C 1.47282 * 117.89505 * 50.71958 * 5 4 2 21 21 C 1.52655 * 108.38605 * 310.70462 * 20 5 4 22 22 C 1.53983 * 110.13468 * 288.24957 * 21 20 5 23 23 C 1.54609 * 103.87337 * 241.76506 * 22 21 20 24 24 O 1.44478 * 104.82158 * 336.10645 * 23 22 21 25 25 C 1.44548 * 105.36978 * 40.15407 * 24 23 22 26 26 O 1.42210 * 110.83655 * 50.72411 * 21 20 5 27 27 H 1.08999 * 109.47208 * 299.90102 * 1 2 3 28 28 H 1.09002 * 109.46876 * 59.89752 * 1 2 3 29 29 H 1.08999 * 109.47422 * 179.89903 * 1 2 3 30 30 H 1.08994 * 109.55433 * 67.59735 * 4 2 1 31 31 H 1.08998 * 109.45518 * 307.16760 * 4 2 1 32 32 H 1.09001 * 109.47190 * 59.99892 * 9 6 5 33 33 H 1.09004 * 109.47089 * 299.99759 * 9 6 5 34 34 H 1.09001 * 109.46832 * 60.00079 * 10 9 6 35 35 H 1.09001 * 109.47502 * 299.99601 * 10 9 6 36 36 H 1.09001 * 109.47002 * 60.00426 * 11 10 9 37 37 H 1.08993 * 109.46955 * 299.99989 * 11 10 9 38 38 H 0.97001 * 119.99934 * 359.97438 * 15 14 12 39 39 H 1.09001 * 109.68584 * 70.42914 * 20 5 4 40 40 H 1.09001 * 109.68513 * 190.98304 * 20 5 4 41 41 H 1.09009 * 110.54522 * 0.36008 * 22 21 20 42 42 H 1.08995 * 110.54616 * 123.02003 * 22 21 20 43 43 H 1.09000 * 110.37078 * 94.93930 * 23 22 21 44 44 H 1.08999 * 110.36398 * 217.15948 * 23 22 21 45 45 H 1.09002 * 110.39528 * 201.22141 * 25 24 23 46 46 H 1.08995 * 110.39495 * 78.82891 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0423 -0.7201 -1.2469 5 7 3.5028 -0.8673 -1.1422 6 16 4.4996 -0.3964 -2.3779 7 8 5.7317 -0.0932 -1.7383 8 8 3.7616 0.6083 -3.0600 9 6 4.6672 -1.8764 -3.4133 10 6 5.5761 -1.5655 -4.6042 11 6 5.7180 -2.8140 -5.4771 12 6 6.6128 -2.5076 -6.6504 13 1 7.0380 -1.5211 -6.7620 14 6 6.8893 -3.4868 -7.5808 15 7 6.3719 -4.6882 -7.4446 16 14 7.9989 -3.1072 -9.0347 17 1 8.1366 -4.3189 -9.8821 18 1 9.3370 -2.6930 -8.5414 19 1 7.4051 -2.0076 -9.8369 20 6 4.0504 -1.4412 0.0988 21 6 3.4247 -0.7105 1.2841 22 6 3.9897 0.7185 1.3841 23 6 4.6913 0.7441 2.7616 24 8 4.0384 -0.2918 3.5283 25 6 3.8399 -1.3852 2.6039 26 8 2.0079 -0.6764 1.1667 27 1 -0.3633 0.5123 0.8909 28 1 -0.3633 0.5154 -0.8891 29 1 -0.3634 -1.0276 -0.0018 30 1 1.7959 -0.1354 -2.1331 31 1 1.5791 -1.7045 -1.3138 32 1 3.6850 -2.1794 -3.7758 33 1 5.1024 -2.6842 -2.8248 34 1 6.5585 -1.2623 -4.2420 35 1 5.1406 -0.7579 -5.1926 36 1 4.7358 -3.1177 -5.8393 37 1 6.1538 -3.6213 -4.8885 38 1 5.7960 -4.8855 -6.6894 39 1 3.8066 -2.5023 0.1515 40 1 5.1325 -1.3113 0.1172 41 1 4.7082 0.9025 0.5853 42 1 3.1840 1.4517 1.3489 43 1 5.7527 0.5223 2.6510 44 1 4.5550 1.7146 3.2387 45 1 3.0475 -2.0440 2.9592 46 1 4.7669 -1.9426 2.4702 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000373684010.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:53 Heat of formation + Delta-G solvation = -195.268748 kcal Electronic energy + Delta-G solvation = -28187.327140 eV Core-core repulsion = 24202.868597 eV Total energy + Delta-G solvation = -3984.458544 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.69679 -39.04779 -38.41220 -37.23611 -36.82660 -36.01658 -34.30610 -34.27857 -31.71056 -30.15658 -29.36223 -27.75976 -26.01383 -25.37600 -24.07186 -23.00569 -22.73368 -20.87172 -19.93914 -19.21227 -18.80603 -18.36923 -17.68144 -17.53775 -16.93900 -16.73419 -16.52413 -16.04470 -15.71409 -15.65832 -15.55104 -15.32169 -15.11810 -14.85018 -13.97458 -13.86546 -13.78916 -13.71276 -13.51895 -13.36349 -13.31682 -13.25763 -13.16578 -12.75186 -12.67745 -12.62849 -12.59863 -12.52316 -12.37936 -12.03264 -11.96421 -11.92291 -11.63151 -11.43587 -11.23400 -10.81120 -10.72427 -10.58628 -9.87593 -8.73618 -6.45094 -0.97270 1.42875 1.51687 1.59297 1.79039 2.41689 2.53177 2.62744 2.89293 2.92838 3.11167 3.35444 3.42840 3.58129 3.67724 3.73568 3.76833 3.87257 4.03516 4.07712 4.18884 4.21293 4.26660 4.30410 4.43753 4.46560 4.52744 4.66211 4.68336 4.73406 4.74933 4.75233 4.80071 4.84162 4.88635 4.94918 5.06170 5.21592 5.23160 5.31927 5.34440 5.69176 5.92054 6.13080 6.14878 6.52556 7.36123 8.67957 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.021661 B = 0.002725 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.352065 B =10272.620451 C =10697.219161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.071 3.929 3 H 0.058 0.942 4 C 0.080 3.920 5 N -0.999 5.999 6 S 2.622 3.378 7 O -0.977 6.977 8 O -0.981 6.981 9 C -0.610 4.610 10 C -0.100 4.100 11 C 0.015 3.985 12 C -0.631 4.631 13 H 0.052 0.948 14 C -0.036 4.036 15 N -0.935 5.935 16 Si 1.115 2.885 17 H -0.281 1.281 18 H -0.268 1.268 19 H -0.269 1.269 20 C 0.091 3.909 21 C 0.078 3.922 22 C -0.187 4.187 23 C 0.047 3.953 24 O -0.388 6.388 25 C 0.060 3.940 26 O -0.364 6.364 27 H 0.068 0.932 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.145 0.855 33 H 0.146 0.854 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.000 1.000 37 H 0.001 0.999 38 H 0.258 0.742 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.104 0.896 45 H 0.113 0.887 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.370 8.158 21.016 24.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.012 3.988 3 H 0.076 0.924 4 C -0.045 4.045 5 N -0.837 5.837 6 S 2.719 3.281 7 O -0.968 6.968 8 O -0.971 6.971 9 C -0.741 4.741 10 C -0.139 4.139 11 C -0.023 4.023 12 C -0.668 4.668 13 H 0.070 0.930 14 C -0.234 4.234 15 N -0.572 5.572 16 Si 0.936 3.064 17 H -0.207 1.207 18 H -0.194 1.194 19 H -0.194 1.194 20 C -0.035 4.035 21 C 0.036 3.964 22 C -0.225 4.225 23 C -0.030 4.030 24 O -0.307 6.307 25 C -0.017 4.017 26 O -0.283 6.283 27 H 0.087 0.913 28 H 0.108 0.892 29 H 0.092 0.908 30 H 0.123 0.877 31 H 0.117 0.883 32 H 0.163 0.837 33 H 0.164 0.836 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.018 0.982 37 H 0.019 0.981 38 H 0.067 0.933 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.096 0.904 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.122 0.878 45 H 0.131 0.869 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.509 8.313 19.932 23.597 hybrid contribution -0.629 0.052 0.649 0.905 sum -10.138 8.364 20.581 24.419 Atomic orbital electron populations 1.21748 0.90205 1.04016 1.03733 1.22496 0.96772 0.95219 0.84279 0.92442 1.22352 0.78260 1.03481 1.00380 1.57722 1.17201 1.79909 1.28905 1.04554 0.72978 0.76527 0.74009 1.93524 1.45602 1.83612 1.74029 1.93528 1.72208 1.55726 1.75637 1.30573 1.10145 1.21559 1.11783 1.21194 0.98067 1.00248 0.94396 1.19123 0.95534 0.93412 0.94209 1.22563 1.32949 1.00122 1.11203 0.93006 1.27418 0.99236 0.92629 1.04091 1.70924 1.32079 1.22190 1.32039 0.82966 0.74821 0.76083 0.72558 1.20665 1.19360 1.19401 1.22268 0.99910 0.99284 0.81995 1.22738 0.82469 0.95007 0.96172 1.23594 1.01633 0.97789 0.99524 1.23511 0.96732 0.92920 0.89811 1.89159 1.80232 1.27021 1.34314 1.23457 1.02612 0.89965 0.85649 1.87879 1.19343 1.77594 1.43508 0.91292 0.89223 0.90776 0.87722 0.88284 0.83709 0.83574 0.91531 0.91643 0.98183 0.98108 0.93283 0.87668 0.87394 0.90366 0.90010 0.90666 0.87765 0.86906 0.88206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.57 71.98 0.69 -1.02 16 2 C 0.07 1.22 3.10 30.54 0.09 1.31 16 3 H 0.06 1.08 6.50 -2.39 -0.02 1.06 16 4 C 0.08 1.39 5.91 86.20 0.51 1.90 16 5 N -1.00 -20.33 3.17 -513.26 -1.62 -21.96 16 6 S 2.62 71.71 5.48 -56.49 -0.31 71.40 16 7 O -0.98 -31.05 16.62 -127.65 -2.12 -33.18 16 8 O -0.98 -32.00 16.62 -127.65 -2.12 -34.12 16 9 C -0.61 -17.52 6.18 71.98 0.44 -17.08 16 10 C -0.10 -3.99 5.16 30.60 0.16 -3.84 16 11 C 0.02 0.78 4.28 29.85 0.13 0.91 16 12 C -0.63 -35.97 9.11 25.60 0.23 -35.74 16 13 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 14 C -0.04 -2.07 5.46 84.65 0.46 -1.61 16 15 N -0.94 -57.22 13.65 21.45 0.29 -56.93 16 16 Si 1.12 49.87 29.90 68.60 2.05 51.92 16 17 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 18 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 19 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 20 C 0.09 1.56 5.01 86.12 0.43 1.99 16 21 C 0.08 1.39 1.05 -10.26 -0.01 1.38 16 22 C -0.19 -3.57 5.77 31.47 0.18 -3.38 16 23 C 0.05 0.78 7.65 72.53 0.55 1.34 16 24 O -0.39 -7.74 11.65 -148.98 -1.74 -9.47 16 25 C 0.06 0.94 6.93 72.30 0.50 1.44 16 26 O -0.36 -6.95 9.84 -148.98 -1.47 -8.42 16 27 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.10 1.86 6.88 -2.39 -0.02 1.84 16 31 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.14 3.64 8.14 -2.39 -0.02 3.62 16 33 H 0.15 3.62 8.14 -2.39 -0.02 3.60 16 34 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 36 H 0.00 -0.01 8.01 -2.39 -0.02 -0.03 16 37 H 0.00 0.03 8.01 -2.39 -0.02 0.01 16 38 H 0.26 15.75 7.22 -92.71 -0.67 15.08 16 39 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.11 1.88 6.80 -2.39 -0.02 1.86 16 41 H 0.08 1.67 7.67 -2.38 -0.02 1.65 16 42 H 0.08 1.58 6.62 -2.39 -0.02 1.56 16 43 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.11 1.58 8.08 -2.39 -0.02 1.56 16 46 H 0.10 1.13 7.84 -2.39 -0.02 1.11 16 Total: -1.00 -75.62 374.35 -1.60 -77.22 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 1.06 Total: 15.93 kcal Atomic # 6 Polarization: -56.77 SS G_CDS: 4.38 Total: -52.39 kcal Atomic # 7 Polarization: -77.56 SS G_CDS: -1.33 Total: -78.89 kcal Atomic # 8 Polarization: -77.74 SS G_CDS: -7.44 Total: -85.19 kcal Atomic # 14 Polarization: 49.87 SS G_CDS: 2.05 Total: 51.92 kcal Atomic # 16 Polarization: 71.71 SS G_CDS: -0.31 Total: 71.40 kcal Total: -75.62 -1.60 -77.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373684010.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.050 kcal (2) G-P(sol) polarization free energy of solvation -75.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds