Wall clock time and date at job start Tue Mar 31 2020 17:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.50577 * 2 1 4 4 C 1.53275 * 109.50974 * 120.09443 * 2 1 3 5 5 N 1.47155 * 108.51671 * 172.73703 * 4 2 1 6 6 S 1.65597 * 121.04540 * 128.98731 * 5 4 2 7 7 O 1.42098 * 104.27933 * 26.04408 * 6 5 4 8 8 O 1.42103 * 104.28027 * 153.90886 * 6 5 4 9 9 C 1.81410 * 104.44677 * 269.97537 * 6 5 4 10 10 C 1.52997 * 109.46889 * 179.97438 * 9 6 5 11 11 C 1.52999 * 109.47154 * 179.97438 * 10 9 6 12 12 C 1.50698 * 109.47408 * 180.02562 * 11 10 9 13 13 H 1.07998 * 119.99738 * 359.97438 * 12 11 10 14 14 C 1.37872 * 119.99962 * 180.02562 * 12 11 10 15 15 N 1.31521 * 119.99973 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 120.00331 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.47253 * 89.99843 * 16 14 12 18 18 H 1.48492 * 109.47515 * 210.00174 * 16 14 12 19 19 H 1.48507 * 109.47145 * 330.00446 * 16 14 12 20 20 C 1.47286 * 117.91212 * 308.96212 * 5 4 2 21 21 C 1.52644 * 108.38372 * 49.56475 * 20 5 4 22 22 C 1.53976 * 110.14714 * 71.78630 * 21 20 5 23 23 C 1.54613 * 103.87639 * 118.22394 * 22 21 20 24 24 O 1.44475 * 104.82081 * 23.89571 * 23 22 21 25 25 C 1.44551 * 105.37142 * 319.84879 * 24 23 22 26 26 O 1.42221 * 110.84033 * 309.28694 * 21 20 5 27 27 H 1.08993 * 109.47563 * 299.90256 * 1 2 3 28 28 H 1.08998 * 109.47049 * 59.90958 * 1 2 3 29 29 H 1.09001 * 109.46926 * 179.90330 * 1 2 3 30 30 H 1.09005 * 109.62815 * 53.02921 * 4 2 1 31 31 H 1.08995 * 109.63126 * 292.44755 * 4 2 1 32 32 H 1.08998 * 109.46748 * 299.99829 * 9 6 5 33 33 H 1.08998 * 109.46869 * 60.00498 * 9 6 5 34 34 H 1.08992 * 109.47708 * 300.00388 * 10 9 6 35 35 H 1.09006 * 109.46758 * 60.00459 * 10 9 6 36 36 H 1.09005 * 109.47302 * 300.00433 * 11 10 9 37 37 H 1.09001 * 109.46915 * 60.00088 * 11 10 9 38 38 H 0.97002 * 120.00144 * 179.97438 * 15 14 12 39 39 H 1.09001 * 109.68066 * 169.28759 * 20 5 4 40 40 H 1.09002 * 109.67884 * 289.83956 * 20 5 4 41 41 H 1.09004 * 110.54864 * 236.82026 * 22 21 20 42 42 H 1.09002 * 110.54384 * 359.62560 * 22 21 20 43 43 H 1.08993 * 110.37009 * 142.73767 * 23 22 21 44 44 H 1.09001 * 110.36390 * 264.95552 * 23 22 21 45 45 H 1.09000 * 110.39468 * 281.16797 * 25 24 23 46 46 H 1.09001 * 110.38978 * 158.77839 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0419 -0.7244 1.2500 5 7 3.5027 -0.8661 1.1427 6 16 4.4995 -0.3947 2.3782 7 8 3.6891 -0.4974 3.5409 8 8 5.6592 -1.2004 2.2198 9 6 4.8773 1.3425 2.0171 10 6 5.8022 1.8992 3.1012 11 6 6.1214 3.3642 2.7964 12 6 7.0329 3.9124 3.8639 13 1 7.3523 3.2794 4.6786 14 6 7.4583 5.2224 3.8011 15 7 8.2534 5.7010 4.7330 16 14 6.9053 6.3175 2.3924 17 1 5.6435 7.0056 2.7663 18 1 7.9555 7.3285 2.1097 19 1 6.6770 5.4888 1.1814 20 6 4.0504 -1.4410 -0.0978 21 6 3.4247 -0.7114 -1.2837 22 6 3.9900 0.7172 -1.3856 23 6 4.6915 0.7409 -2.7633 24 8 4.0382 -0.2958 -3.5286 25 6 3.8395 -1.3880 -2.6028 26 8 2.0078 -0.6771 -1.1663 27 1 -0.3634 0.5123 0.8908 28 1 -0.3633 0.5152 -0.8892 29 1 -0.3633 -1.0277 -0.0017 30 1 1.5822 -1.7106 1.3157 31 1 1.7947 -0.1422 2.1377 32 1 5.3698 1.4132 1.0473 33 1 3.9524 1.9190 1.9979 34 1 5.3094 1.8285 4.0708 35 1 6.7271 1.3227 3.1209 36 1 6.6145 3.4345 1.8268 37 1 5.1967 3.9409 2.7764 38 1 8.5530 6.6225 4.6887 39 1 5.1324 -1.3110 -0.1162 40 1 3.8066 -2.5022 -0.1495 41 1 3.1843 1.4507 -1.3539 42 1 4.7087 0.9021 -0.5872 43 1 4.5538 1.7102 -3.2424 44 1 5.7532 0.5208 -2.6522 45 1 4.7664 -1.9456 -2.4685 46 1 3.0468 -2.0468 -2.9572 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000373684018.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:04 Heat of formation + Delta-G solvation = -160.219359 kcal Electronic energy + Delta-G solvation = -28706.337635 eV Core-core repulsion = 24723.398946 eV Total energy + Delta-G solvation = -3982.938688 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.99095 -38.30793 -37.18382 -35.99523 -35.19784 -34.92357 -33.61516 -32.29783 -30.99657 -29.49193 -28.48016 -27.05086 -25.17360 -23.76743 -23.24826 -22.31436 -20.56356 -20.04685 -18.98560 -17.87995 -17.62004 -17.03440 -16.69161 -16.49746 -16.14457 -15.93540 -15.61643 -15.07822 -14.82821 -14.50516 -14.30765 -14.27186 -14.04168 -13.13946 -13.08735 -12.95920 -12.73695 -12.56868 -12.46501 -12.31380 -12.25814 -12.09823 -11.99251 -11.85966 -11.82714 -11.71375 -11.69533 -11.37845 -11.07576 -10.99914 -10.75928 -10.58793 -10.17184 -10.10957 -9.93689 -9.69468 -9.34183 -9.04633 -8.64473 -6.13929 -4.13747 0.16570 2.42796 3.08520 3.21394 3.29276 3.30470 3.57276 3.77874 3.91154 4.11932 4.24027 4.34655 4.36596 4.40606 4.52049 4.65397 4.73376 4.79870 4.87743 4.91399 4.93621 4.95905 5.09171 5.19330 5.22597 5.28899 5.34195 5.37145 5.41763 5.44875 5.51392 5.62439 5.66705 5.73849 5.82493 5.99992 6.13466 6.15489 6.37632 6.57002 6.84344 7.03725 7.17875 7.64515 8.41456 8.90162 9.46848 10.99324 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012548 B = 0.003839 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.866654 B = 7292.663544 C = 8151.975636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.068 3.932 3 H 0.068 0.932 4 C 0.093 3.907 5 N -1.006 6.006 6 S 2.597 3.403 7 O -0.952 6.952 8 O -0.953 6.953 9 C -0.618 4.618 10 C -0.097 4.097 11 C -0.003 4.003 12 C -0.529 4.529 13 H 0.075 0.925 14 C 0.069 3.931 15 N -0.899 5.899 16 Si 0.880 3.120 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.266 1.266 20 C 0.105 3.895 21 C 0.076 3.924 22 C -0.188 4.188 23 C 0.046 3.954 24 O -0.368 6.368 25 C 0.061 3.939 26 O -0.354 6.354 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.020 0.980 37 H 0.015 0.985 38 H 0.265 0.735 39 H 0.103 0.897 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.096 0.904 44 H 0.067 0.933 45 H 0.081 0.919 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.300 -13.935 -14.999 24.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.009 3.991 3 H 0.086 0.914 4 C -0.033 4.033 5 N -0.843 5.843 6 S 2.694 3.306 7 O -0.942 6.942 8 O -0.943 6.943 9 C -0.750 4.750 10 C -0.136 4.136 11 C -0.042 4.042 12 C -0.567 4.567 13 H 0.093 0.907 14 C -0.133 4.133 15 N -0.537 5.537 16 Si 0.707 3.293 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.191 1.191 20 C -0.021 4.021 21 C 0.034 3.966 22 C -0.226 4.226 23 C -0.031 4.031 24 O -0.286 6.286 25 C -0.016 4.016 26 O -0.273 6.273 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.120 0.880 32 H 0.145 0.855 33 H 0.146 0.854 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.038 0.962 37 H 0.034 0.966 38 H 0.074 0.926 39 H 0.121 0.879 40 H 0.102 0.898 41 H 0.109 0.891 42 H 0.102 0.898 43 H 0.114 0.886 44 H 0.085 0.915 45 H 0.099 0.901 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -14.109 -14.442 -14.569 24.897 hybrid contribution -0.065 1.490 -0.598 1.607 sum -14.173 -12.951 -15.167 24.468 Atomic orbital electron populations 1.21738 0.91941 1.03391 1.03096 1.22581 0.95609 0.95828 0.85039 0.91386 1.22149 0.79340 1.02630 0.99139 1.58095 1.16475 1.77461 1.32247 1.05582 0.73640 0.77980 0.73426 1.93580 1.68153 1.86689 1.45804 1.93580 1.49574 1.65719 1.85442 1.30762 1.10660 1.23155 1.10387 1.21322 0.96805 1.00842 0.94625 1.19521 0.96802 0.90081 0.97763 1.21114 1.28756 0.97252 1.09531 0.90717 1.25018 0.94552 0.97900 0.95840 1.69909 1.34237 1.15744 1.33849 0.86787 0.78625 0.80586 0.83316 1.20199 1.21196 1.19111 1.21943 0.99124 0.98490 0.82547 1.22767 0.82859 0.95035 0.95971 1.23691 1.01972 0.97679 0.99228 1.23440 0.96435 0.92773 0.90441 1.89199 1.79880 1.26200 1.33326 1.23301 1.01407 0.90381 0.86548 1.87894 1.18903 1.77464 1.43010 0.90460 0.91335 0.91432 0.90022 0.88023 0.85547 0.85350 0.90916 0.90926 0.96211 0.96626 0.92561 0.87926 0.89760 0.89117 0.89804 0.88575 0.91502 0.90147 0.87576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.57 37.16 0.36 -0.59 16 2 C 0.07 0.57 3.11 -26.59 -0.08 0.49 16 3 H 0.07 0.56 6.51 -51.93 -0.34 0.22 16 4 C 0.09 0.85 5.78 -3.54 -0.02 0.83 16 5 N -1.01 -10.67 3.16 -113.34 -0.36 -11.03 16 6 S 2.60 35.93 5.42 -107.50 -0.58 35.34 16 7 O -0.95 -15.70 16.81 -57.54 -0.97 -16.67 16 8 O -0.95 -15.61 16.84 -57.54 -0.97 -16.58 16 9 C -0.62 -8.43 5.97 37.16 0.22 -8.21 16 10 C -0.10 -1.80 5.16 -26.73 -0.14 -1.94 16 11 C 0.00 -0.07 4.04 -27.88 -0.11 -0.18 16 12 C -0.53 -14.73 9.66 -34.44 -0.33 -15.06 16 13 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 14 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 15 N -0.90 -27.28 13.96 55.43 0.77 -26.51 16 16 Si 0.88 20.98 27.47 -169.99 -4.67 16.31 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.27 -5.99 6.54 56.52 0.37 -5.62 16 20 C 0.10 0.97 4.82 -3.80 -0.02 0.95 16 21 C 0.08 0.68 1.05 -89.81 -0.09 0.58 16 22 C -0.19 -1.68 5.77 -25.37 -0.15 -1.83 16 23 C 0.05 0.40 7.65 38.01 0.29 0.69 16 24 O -0.37 -3.85 11.65 -35.23 -0.41 -4.26 16 25 C 0.06 0.51 6.93 37.65 0.26 0.77 16 26 O -0.35 -3.44 9.84 -35.23 -0.35 -3.79 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.10 0.89 7.21 -51.93 -0.37 0.51 16 32 H 0.13 1.47 6.14 -51.92 -0.32 1.15 16 33 H 0.13 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 37 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.10 0.90 7.18 -51.93 -0.37 0.53 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.09 0.81 6.64 -51.93 -0.34 0.47 16 42 H 0.08 0.72 5.41 -51.93 -0.28 0.44 16 43 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.08 0.52 7.84 -51.93 -0.41 0.11 16 46 H 0.11 0.81 8.08 -51.93 -0.42 0.39 16 LS Contribution 368.36 15.07 5.55 5.55 Total: -1.00 -35.30 368.36 -9.33 -44.63 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -7.44 Total: -1.35 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: 0.09 Total: -21.64 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.42 Total: -37.54 kcal Atomic # 8 Polarization: -38.61 SS G_CDS: -2.69 Total: -41.30 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.67 Total: 16.31 kcal Atomic # 16 Polarization: 35.93 SS G_CDS: -0.58 Total: 35.34 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.30 -9.33 -44.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373684018.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.593 kcal (2) G-P(sol) polarization free energy of solvation -35.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds