Wall clock time and date at job start Tue Mar 31 2020 17:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.50577 * 2 1 4 4 C 1.53275 * 109.50974 * 120.09443 * 2 1 3 5 5 N 1.47155 * 108.51671 * 172.73703 * 4 2 1 6 6 S 1.65597 * 121.04540 * 128.98731 * 5 4 2 7 7 O 1.42098 * 104.27933 * 26.04408 * 6 5 4 8 8 O 1.42103 * 104.28027 * 153.90886 * 6 5 4 9 9 C 1.81410 * 104.44677 * 269.97537 * 6 5 4 10 10 C 1.52997 * 109.46889 * 179.97438 * 9 6 5 11 11 C 1.52999 * 109.47154 * 179.97438 * 10 9 6 12 12 C 1.50698 * 109.47408 * 180.02562 * 11 10 9 13 13 H 1.07998 * 119.99738 * 359.97438 * 12 11 10 14 14 C 1.37872 * 119.99962 * 180.02562 * 12 11 10 15 15 N 1.31521 * 119.99973 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 120.00331 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.47253 * 89.99843 * 16 14 12 18 18 H 1.48492 * 109.47515 * 210.00174 * 16 14 12 19 19 H 1.48507 * 109.47145 * 330.00446 * 16 14 12 20 20 C 1.47286 * 117.91212 * 308.96212 * 5 4 2 21 21 C 1.52644 * 108.38372 * 49.56475 * 20 5 4 22 22 C 1.53976 * 110.14714 * 71.78630 * 21 20 5 23 23 C 1.54613 * 103.87639 * 118.22394 * 22 21 20 24 24 O 1.44475 * 104.82081 * 23.89571 * 23 22 21 25 25 C 1.44551 * 105.37142 * 319.84879 * 24 23 22 26 26 O 1.42221 * 110.84033 * 309.28694 * 21 20 5 27 27 H 1.08993 * 109.47563 * 299.90256 * 1 2 3 28 28 H 1.08998 * 109.47049 * 59.90958 * 1 2 3 29 29 H 1.09001 * 109.46926 * 179.90330 * 1 2 3 30 30 H 1.09005 * 109.62815 * 53.02921 * 4 2 1 31 31 H 1.08995 * 109.63126 * 292.44755 * 4 2 1 32 32 H 1.08998 * 109.46748 * 299.99829 * 9 6 5 33 33 H 1.08998 * 109.46869 * 60.00498 * 9 6 5 34 34 H 1.08992 * 109.47708 * 300.00388 * 10 9 6 35 35 H 1.09006 * 109.46758 * 60.00459 * 10 9 6 36 36 H 1.09005 * 109.47302 * 300.00433 * 11 10 9 37 37 H 1.09001 * 109.46915 * 60.00088 * 11 10 9 38 38 H 0.97002 * 120.00144 * 179.97438 * 15 14 12 39 39 H 1.09001 * 109.68066 * 169.28759 * 20 5 4 40 40 H 1.09002 * 109.67884 * 289.83956 * 20 5 4 41 41 H 1.09004 * 110.54864 * 236.82026 * 22 21 20 42 42 H 1.09002 * 110.54384 * 359.62560 * 22 21 20 43 43 H 1.08993 * 110.37009 * 142.73767 * 23 22 21 44 44 H 1.09001 * 110.36390 * 264.95552 * 23 22 21 45 45 H 1.09000 * 110.39468 * 281.16797 * 25 24 23 46 46 H 1.09001 * 110.38978 * 158.77839 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0419 -0.7244 1.2500 5 7 3.5027 -0.8661 1.1427 6 16 4.4995 -0.3947 2.3782 7 8 3.6891 -0.4974 3.5409 8 8 5.6592 -1.2004 2.2198 9 6 4.8773 1.3425 2.0171 10 6 5.8022 1.8992 3.1012 11 6 6.1214 3.3642 2.7964 12 6 7.0329 3.9124 3.8639 13 1 7.3523 3.2794 4.6786 14 6 7.4583 5.2224 3.8011 15 7 8.2534 5.7010 4.7330 16 14 6.9053 6.3175 2.3924 17 1 5.6435 7.0056 2.7663 18 1 7.9555 7.3285 2.1097 19 1 6.6770 5.4888 1.1814 20 6 4.0504 -1.4410 -0.0978 21 6 3.4247 -0.7114 -1.2837 22 6 3.9900 0.7172 -1.3856 23 6 4.6915 0.7409 -2.7633 24 8 4.0382 -0.2958 -3.5286 25 6 3.8395 -1.3880 -2.6028 26 8 2.0078 -0.6771 -1.1663 27 1 -0.3634 0.5123 0.8908 28 1 -0.3633 0.5152 -0.8892 29 1 -0.3633 -1.0277 -0.0017 30 1 1.5822 -1.7106 1.3157 31 1 1.7947 -0.1422 2.1377 32 1 5.3698 1.4132 1.0473 33 1 3.9524 1.9190 1.9979 34 1 5.3094 1.8285 4.0708 35 1 6.7271 1.3227 3.1209 36 1 6.6145 3.4345 1.8268 37 1 5.1967 3.9409 2.7764 38 1 8.5530 6.6225 4.6887 39 1 5.1324 -1.3110 -0.1162 40 1 3.8066 -2.5022 -0.1495 41 1 3.1843 1.4507 -1.3539 42 1 4.7087 0.9021 -0.5872 43 1 4.5538 1.7102 -3.2424 44 1 5.7532 0.5208 -2.6522 45 1 4.7664 -1.9456 -2.4685 46 1 3.0468 -2.0468 -2.9572 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000373684018.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:03 Heat of formation + Delta-G solvation = -187.335642 kcal Electronic energy + Delta-G solvation = -28707.513485 eV Core-core repulsion = 24723.398946 eV Total energy + Delta-G solvation = -3984.114538 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.66135 -38.99305 -38.36560 -37.18188 -36.56294 -35.96791 -34.30384 -34.23861 -31.66074 -30.25777 -30.05826 -27.71358 -26.01331 -25.30063 -23.99860 -22.94511 -22.21159 -20.81276 -19.92489 -19.01596 -18.85864 -18.30650 -17.56745 -17.46400 -17.17838 -16.68600 -16.45784 -16.24546 -15.96604 -15.62854 -15.46704 -15.10701 -14.88865 -14.75120 -14.16154 -13.81789 -13.75365 -13.64994 -13.43162 -13.31931 -13.29968 -13.21058 -13.20301 -12.82850 -12.73904 -12.69516 -12.58253 -12.43616 -12.29975 -11.98270 -11.86894 -11.71927 -11.64511 -11.42356 -11.32367 -10.99691 -10.78661 -10.75833 -9.83648 -8.30895 -6.37095 -0.92745 1.35885 1.38289 1.46866 1.49589 2.35065 2.47235 2.68912 2.91159 2.98176 3.04492 3.38469 3.47969 3.61871 3.71508 3.75951 3.78654 3.91642 4.07587 4.09884 4.20658 4.28286 4.30255 4.34552 4.49962 4.51506 4.58925 4.63127 4.74133 4.78892 4.81513 4.85065 4.86139 4.92685 4.94350 5.00862 5.11384 5.27130 5.30773 5.37178 5.43499 5.61066 5.74831 6.20767 6.23768 6.71393 7.27768 8.86108 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012548 B = 0.003839 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.866654 B = 7292.663544 C = 8151.975636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.067 3.933 3 H 0.073 0.927 4 C 0.087 3.913 5 N -0.999 5.999 6 S 2.613 3.387 7 O -0.982 6.982 8 O -0.982 6.982 9 C -0.612 4.612 10 C -0.101 4.101 11 C -0.003 4.003 12 C -0.544 4.544 13 H 0.029 0.971 14 C 0.002 3.998 15 N -0.952 5.952 16 Si 0.953 3.047 17 H -0.265 1.265 18 H -0.287 1.287 19 H -0.237 1.237 20 C 0.099 3.901 21 C 0.077 3.923 22 C -0.191 4.191 23 C 0.042 3.958 24 O -0.390 6.390 25 C 0.058 3.942 26 O -0.365 6.365 27 H 0.090 0.910 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.152 0.848 33 H 0.156 0.844 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.033 0.967 37 H 0.031 0.969 38 H 0.267 0.733 39 H 0.108 0.892 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.101 0.899 44 H 0.077 0.923 45 H 0.099 0.901 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.051 -13.818 -17.574 27.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.008 3.992 3 H 0.091 0.909 4 C -0.038 4.038 5 N -0.837 5.837 6 S 2.711 3.289 7 O -0.973 6.973 8 O -0.972 6.972 9 C -0.743 4.743 10 C -0.141 4.141 11 C -0.042 4.042 12 C -0.582 4.582 13 H 0.048 0.952 14 C -0.194 4.194 15 N -0.593 5.593 16 Si 0.776 3.224 17 H -0.190 1.190 18 H -0.212 1.212 19 H -0.160 1.160 20 C -0.027 4.027 21 C 0.035 3.965 22 C -0.229 4.229 23 C -0.035 4.035 24 O -0.309 6.309 25 C -0.019 4.019 26 O -0.284 6.284 27 H 0.109 0.891 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.124 0.876 32 H 0.170 0.830 33 H 0.174 0.826 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.051 0.949 37 H 0.049 0.951 38 H 0.076 0.924 39 H 0.126 0.874 40 H 0.114 0.886 41 H 0.109 0.891 42 H 0.106 0.894 43 H 0.119 0.881 44 H 0.095 0.905 45 H 0.117 0.883 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -15.869 -14.354 -17.140 27.416 hybrid contribution 0.486 1.374 0.261 1.480 sum -15.384 -12.980 -16.879 26.269 Atomic orbital electron populations 1.21757 0.90679 1.03742 1.03770 1.22696 0.96595 0.95738 0.84155 0.90930 1.22366 0.78161 1.03401 0.99878 1.57778 1.16801 1.77114 1.31976 1.04840 0.73033 0.77744 0.73298 1.93539 1.68761 1.87095 1.47859 1.93539 1.51098 1.66640 1.85951 1.30670 1.10992 1.23063 1.09624 1.21168 0.97757 0.98907 0.96227 1.19491 0.96160 0.92296 0.96240 1.21547 1.29615 0.97173 1.09901 0.95221 1.26094 0.94514 0.99765 0.99069 1.70086 1.36204 1.16414 1.36566 0.85622 0.78285 0.78344 0.80195 1.18996 1.21247 1.15957 1.22154 0.99505 0.99183 0.81828 1.22770 0.82604 0.95157 0.95925 1.23726 1.02091 0.97623 0.99416 1.23558 0.96878 0.92763 0.90256 1.89174 1.80219 1.27090 1.34393 1.23448 1.02478 0.90046 0.85900 1.87896 1.19288 1.77688 1.43538 0.89079 0.91362 0.91282 0.89316 0.87597 0.83000 0.82607 0.91849 0.91843 0.94856 0.95050 0.92434 0.87434 0.88641 0.89087 0.89414 0.88074 0.90529 0.88340 0.87260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.57 71.98 0.69 -0.82 16 2 C 0.07 0.95 3.11 30.69 0.10 1.04 16 3 H 0.07 0.96 6.51 -2.39 -0.02 0.95 16 4 C 0.09 1.38 5.78 86.35 0.50 1.88 16 5 N -1.00 -18.91 3.16 -512.49 -1.62 -20.53 16 6 S 2.61 68.41 5.42 -56.49 -0.31 68.11 16 7 O -0.98 -31.55 16.81 -127.65 -2.15 -33.70 16 8 O -0.98 -31.28 16.84 -127.65 -2.15 -33.43 16 9 C -0.61 -15.08 5.97 71.98 0.43 -14.65 16 10 C -0.10 -3.69 5.16 30.59 0.16 -3.54 16 11 C 0.00 -0.14 4.04 29.85 0.12 -0.02 16 12 C -0.54 -30.86 9.66 25.60 0.25 -30.62 16 13 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 14 C 0.00 0.14 5.47 84.65 0.46 0.60 16 15 N -0.95 -59.37 13.96 21.45 0.30 -59.07 16 16 Si 0.95 42.15 27.47 68.60 1.88 44.04 16 17 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 18 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 19 H -0.24 -9.26 6.54 99.48 0.65 -8.61 16 20 C 0.10 1.58 4.82 86.11 0.42 2.00 16 21 C 0.08 1.19 1.05 -10.27 -0.01 1.18 16 22 C -0.19 -2.87 5.77 31.47 0.18 -2.69 16 23 C 0.04 0.63 7.65 72.53 0.55 1.19 16 24 O -0.39 -7.38 11.65 -148.98 -1.74 -9.11 16 25 C 0.06 0.84 6.93 72.30 0.50 1.34 16 26 O -0.36 -6.20 9.84 -148.98 -1.47 -7.67 16 27 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.70 16 30 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.11 1.60 7.21 -2.39 -0.02 1.59 16 32 H 0.15 2.97 6.14 -2.39 -0.01 2.96 16 33 H 0.16 3.00 8.14 -2.39 -0.02 2.98 16 34 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 36 H 0.03 1.36 7.20 -2.38 -0.02 1.34 16 37 H 0.03 1.27 7.57 -2.39 -0.02 1.25 16 38 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 39 H 0.11 1.63 7.18 -2.39 -0.02 1.61 16 40 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.09 1.36 6.64 -2.38 -0.02 1.34 16 42 H 0.09 1.21 5.41 -2.39 -0.01 1.20 16 43 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.10 1.02 7.84 -2.39 -0.02 1.00 16 46 H 0.11 1.46 8.08 -2.39 -0.02 1.44 16 Total: -1.00 -77.57 368.36 -1.99 -79.55 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 0.91 Total: 14.94 kcal Atomic # 6 Polarization: -47.46 SS G_CDS: 4.34 Total: -43.12 kcal Atomic # 7 Polarization: -78.29 SS G_CDS: -1.32 Total: -79.61 kcal Atomic # 8 Polarization: -76.41 SS G_CDS: -7.50 Total: -83.91 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 1.88 Total: 44.04 kcal Atomic # 16 Polarization: 68.41 SS G_CDS: -0.31 Total: 68.11 kcal Total: -77.57 -1.99 -79.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373684018.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.782 kcal (2) G-P(sol) polarization free energy of solvation -77.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds