Wall clock time and date at job start Tue Mar 31 2020 17:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 117.00238 * 2 1 4 4 O 1.20822 * 120.00149 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99687 * 179.97438 * 3 2 1 6 6 C 1.52997 * 110.64271 * 59.29764 * 5 3 2 7 7 C 1.54320 * 110.71876 * 296.14956 * 5 3 2 8 8 N 1.47019 * 107.27230 * 219.26721 * 7 5 3 9 9 S 1.65602 * 125.64994 * 178.90510 * 8 7 5 10 10 O 1.42102 * 104.27804 * 206.07540 * 9 8 7 11 11 O 1.42098 * 104.27505 * 333.93575 * 9 8 7 12 12 C 1.81400 * 104.44651 * 90.00512 * 9 8 7 13 13 C 1.52998 * 109.47258 * 180.02562 * 12 9 8 14 14 C 1.52999 * 109.47482 * 180.02562 * 13 12 9 15 15 C 1.50701 * 109.47091 * 180.02562 * 14 13 12 16 16 H 1.07994 * 120.00172 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99792 * 179.97438 * 15 14 13 18 18 N 1.31511 * 119.99796 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99902 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47295 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.46953 * 119.99577 * 19 17 15 22 22 H 1.48493 * 109.47079 * 239.99573 * 19 17 15 23 23 C 1.47426 * 108.70606 * 358.94663 * 8 7 5 24 24 C 1.54913 * 104.82930 * 24.12615 * 23 8 7 25 25 H 1.08995 * 111.00761 * 81.06678 * 24 23 8 26 26 C 1.53004 * 111.00407 * 204.92167 * 24 23 8 27 27 H 1.09001 * 109.46947 * 300.00778 * 1 2 3 28 28 H 1.09004 * 109.46384 * 60.00577 * 1 2 3 29 29 H 1.08993 * 109.47340 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 298.30798 * 6 5 3 31 31 H 1.09001 * 109.46832 * 178.30989 * 6 5 3 32 32 H 1.09004 * 109.47261 * 58.30970 * 6 5 3 33 33 H 1.09001 * 109.88687 * 338.69147 * 7 5 3 34 34 H 1.09003 * 109.87981 * 99.69852 * 7 5 3 35 35 H 1.08999 * 109.47148 * 300.00179 * 12 9 8 36 36 H 1.08998 * 109.47582 * 60.00012 * 12 9 8 37 37 H 1.09008 * 109.46770 * 299.99939 * 13 12 9 38 38 H 1.08994 * 109.47473 * 59.99651 * 13 12 9 39 39 H 1.09008 * 109.46804 * 299.99594 * 14 13 12 40 40 H 1.08994 * 109.47317 * 59.99231 * 14 13 12 41 41 H 0.97002 * 119.99932 * 179.97438 * 18 17 15 42 42 H 1.09002 * 110.36978 * 142.95985 * 23 8 7 43 43 H 1.09000 * 110.36862 * 265.29024 * 23 8 7 44 44 H 1.08999 * 109.46945 * 172.19803 * 26 24 23 45 45 H 1.09004 * 109.46833 * 292.19418 * 26 24 23 46 46 H 1.09000 * 109.47131 * 52.19251 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 6 4.1437 0.5726 -1.2301 7 6 4.1443 0.6682 1.2966 8 7 5.2725 1.5156 1.7098 9 16 6.2038 1.2915 3.0607 10 8 6.6915 2.5900 3.3695 11 8 5.3532 0.5951 3.9611 12 6 7.5569 0.2189 2.5048 13 6 8.4975 -0.0650 3.6777 14 6 9.6391 -0.9691 3.2087 15 6 10.5652 -1.2492 4.3641 16 1 10.3602 -0.8245 5.3357 17 6 11.6742 -2.0478 4.1809 18 7 11.9235 -2.5654 2.9979 19 14 12.8224 -2.3944 5.6129 20 1 12.3237 -1.6994 6.8268 21 1 12.8721 -3.8570 5.8647 22 1 14.1845 -1.9019 5.2856 23 6 5.4369 2.5984 0.7229 24 6 4.0427 2.7501 0.0649 25 1 3.3789 3.3480 0.6892 26 6 4.1606 3.3498 -1.3378 27 1 -0.3633 0.5140 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 3.8705 -0.4824 -1.2081 31 1 5.2297 0.6669 -1.2261 32 1 3.7424 1.0332 -2.1329 33 1 3.3814 0.6612 2.0750 34 1 4.4906 -0.3480 1.1080 35 1 7.1469 -0.7200 2.1329 36 1 8.1097 0.7151 1.7072 37 1 8.9075 0.8739 4.0500 38 1 7.9445 -0.5614 4.4750 39 1 9.2294 -1.9081 2.8361 40 1 10.1920 -0.4724 2.4115 41 1 12.7039 -3.1269 2.8689 42 1 5.7243 3.5247 1.2204 43 1 6.1807 2.3212 -0.0240 44 1 3.1884 3.3176 -1.8296 45 1 4.4961 4.3842 -1.2636 46 1 4.8813 2.7749 -1.9193 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374320123.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:32 Heat of formation + Delta-G solvation = -170.238510 kcal Electronic energy + Delta-G solvation = -27589.472281 eV Core-core repulsion = 23606.099130 eV Total energy + Delta-G solvation = -3983.373151 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.33227 -39.12151 -36.96629 -36.75006 -35.80082 -34.69275 -33.48890 -32.20370 -31.69322 -28.08683 -27.84788 -26.98315 -26.39037 -23.92811 -23.54277 -21.81626 -20.58230 -19.56887 -18.96115 -17.92038 -17.56555 -16.87022 -16.71061 -16.63809 -16.10833 -15.80320 -15.30230 -14.75597 -14.48688 -14.38469 -14.31353 -13.95032 -13.70013 -13.13918 -13.03623 -12.76064 -12.75188 -12.59571 -12.40417 -12.28864 -12.21384 -11.99762 -11.94291 -11.85625 -11.80711 -11.34279 -11.26714 -11.17920 -11.08771 -10.95474 -10.93777 -10.85919 -10.63447 -10.43119 -9.97693 -9.55095 -9.24462 -8.97760 -8.42634 -6.07394 -4.10313 0.33477 1.81268 2.26997 2.69700 3.28477 3.36112 3.41063 3.70985 3.95269 3.99463 4.30575 4.32952 4.41418 4.52770 4.68055 4.75567 4.82983 4.89965 5.03372 5.06101 5.14716 5.16504 5.19446 5.28585 5.29487 5.33412 5.36701 5.40989 5.46672 5.59335 5.73350 5.78484 5.84894 5.88720 5.97912 6.01161 6.12262 6.27441 6.42171 6.84734 7.36214 7.55214 7.64737 7.90781 8.31131 8.96147 9.54555 11.03869 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.020522 B = 0.002539 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.071215 B =11026.368250 C =11191.796554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.354 6.354 3 C 0.478 3.522 4 O -0.500 6.500 5 C -0.063 4.063 6 C -0.140 4.140 7 C 0.137 3.863 8 N -1.017 6.017 9 S 2.612 3.388 10 O -0.954 6.954 11 O -0.956 6.956 12 C -0.606 4.606 13 C -0.106 4.106 14 C 0.031 3.969 15 C -0.525 4.525 16 H 0.059 0.941 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.894 3.106 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.283 1.283 23 C 0.118 3.882 24 C -0.081 4.081 25 H 0.099 0.901 26 C -0.144 4.144 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.103 0.897 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.021 0.979 40 H 0.021 0.979 41 H 0.261 0.739 42 H 0.092 0.908 43 H 0.074 0.926 44 H 0.061 0.939 45 H 0.065 0.935 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.890 7.469 -12.473 25.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.270 6.270 3 C 0.320 3.680 4 O -0.386 6.386 5 C -0.065 4.065 6 C -0.197 4.197 7 C 0.011 3.989 8 N -0.853 5.853 9 S 2.710 3.290 10 O -0.945 6.945 11 O -0.946 6.946 12 C -0.738 4.738 13 C -0.146 4.146 14 C -0.007 4.007 15 C -0.564 4.564 16 H 0.077 0.923 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.722 3.278 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.007 4.007 24 C -0.101 4.101 25 H 0.117 0.883 26 C -0.201 4.201 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.121 0.879 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.146 0.854 36 H 0.147 0.853 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.039 0.961 40 H 0.039 0.961 41 H 0.071 0.929 42 H 0.110 0.890 43 H 0.093 0.907 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.163 8.028 -11.628 25.446 hybrid contribution 0.707 -0.656 0.163 0.978 sum -20.455 7.372 -11.465 24.581 Atomic orbital electron populations 1.23310 0.76121 1.03934 1.02584 1.86528 1.23538 1.33116 1.83789 1.23339 0.91176 0.81489 0.72003 1.90667 1.66789 1.36353 1.44811 1.21645 0.87178 0.99152 0.98528 1.21915 1.02259 1.00748 0.94764 1.21600 0.88982 0.94146 0.94151 1.58809 1.44782 1.38312 1.43410 1.05141 0.75514 0.75720 0.72592 1.93565 1.81745 1.37456 1.81720 1.93566 1.64531 1.76191 1.60317 1.30579 1.16645 1.15483 1.11121 1.21517 0.97412 1.02337 0.93323 1.19065 0.90999 0.93801 0.96874 1.21292 1.08526 1.30259 0.96311 0.92310 1.25021 0.97816 0.95722 0.95835 1.69965 1.27957 1.33516 1.21990 0.86499 0.80658 0.78050 0.82626 1.19596 1.20930 1.20935 1.22191 0.96771 0.90823 0.90927 1.22377 0.96460 0.92584 0.98658 0.88294 1.21784 1.02440 1.01242 0.94659 0.91758 0.91889 0.87864 0.90718 0.90120 0.91318 0.90585 0.89741 0.85351 0.85327 0.91557 0.91553 0.96091 0.96094 0.92943 0.88984 0.90745 0.91957 0.91612 0.91627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.56 101.05 1.07 1.29 16 2 O -0.35 -3.20 10.51 -39.26 -0.41 -3.62 16 3 C 0.48 4.85 6.48 36.01 0.23 5.08 16 4 O -0.50 -6.13 15.50 -18.75 -0.29 -6.42 16 5 C -0.06 -0.55 0.70 -153.82 -0.11 -0.66 16 6 C -0.14 -0.92 7.15 37.16 0.27 -0.65 16 7 C 0.14 1.40 6.06 -3.07 -0.02 1.38 16 8 N -1.02 -11.66 3.62 -111.42 -0.40 -12.07 16 9 S 2.61 38.82 5.65 -107.50 -0.61 38.22 16 10 O -0.95 -16.66 17.28 -57.54 -0.99 -17.65 16 11 O -0.96 -16.89 17.60 -57.54 -1.01 -17.91 16 12 C -0.61 -9.11 6.18 37.16 0.23 -8.88 16 13 C -0.11 -2.13 5.16 -26.73 -0.14 -2.27 16 14 C 0.03 0.77 4.97 -27.88 -0.14 0.64 16 15 C -0.53 -14.71 9.11 -34.44 -0.31 -15.02 16 16 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -26.37 13.29 55.43 0.74 -25.64 16 19 Si 0.89 21.48 29.54 -169.99 -5.02 16.45 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 C 0.12 1.11 6.22 -2.53 -0.02 1.09 16 24 C -0.08 -0.71 2.58 -88.46 -0.23 -0.94 16 25 H 0.10 1.01 7.46 -51.93 -0.39 0.62 16 26 C -0.14 -0.96 8.27 37.16 0.31 -0.66 16 27 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 28 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 29 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.48 7.32 -51.93 -0.38 0.10 16 32 H 0.07 0.39 7.10 -51.93 -0.37 0.03 16 33 H 0.08 0.84 7.82 -51.93 -0.41 0.44 16 34 H 0.08 0.72 7.84 -51.93 -0.41 0.31 16 35 H 0.13 1.70 8.14 -51.92 -0.42 1.28 16 36 H 0.13 1.70 8.14 -51.93 -0.42 1.28 16 37 H 0.07 1.30 8.14 -51.92 -0.42 0.88 16 38 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.02 0.54 8.14 -51.92 -0.42 0.12 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 42 H 0.09 0.90 7.67 -51.93 -0.40 0.50 16 43 H 0.07 0.54 7.55 -51.93 -0.39 0.15 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.06 0.36 6.71 -51.93 -0.35 0.01 16 LS Contribution 386.43 15.07 5.82 5.82 Total: -1.00 -35.90 386.43 -8.84 -44.74 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -7.70 Total: -3.87 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: 1.04 Total: -18.06 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 0.33 Total: -37.71 kcal Atomic # 8 Polarization: -42.89 SS G_CDS: -2.71 Total: -45.60 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 38.82 SS G_CDS: -0.61 Total: 38.22 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.90 -8.84 -44.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374320123.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.495 kcal (2) G-P(sol) polarization free energy of solvation -35.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds