Wall clock time and date at job start Tue Mar 31 2020 17:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 117.00238 * 2 1 4 4 O 1.20822 * 120.00149 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99687 * 179.97438 * 3 2 1 6 6 C 1.52997 * 110.64271 * 59.29764 * 5 3 2 7 7 C 1.54320 * 110.71876 * 296.14956 * 5 3 2 8 8 N 1.47019 * 107.27230 * 219.26721 * 7 5 3 9 9 S 1.65602 * 125.64994 * 178.90510 * 8 7 5 10 10 O 1.42102 * 104.27804 * 206.07540 * 9 8 7 11 11 O 1.42098 * 104.27505 * 333.93575 * 9 8 7 12 12 C 1.81400 * 104.44651 * 90.00512 * 9 8 7 13 13 C 1.52998 * 109.47258 * 180.02562 * 12 9 8 14 14 C 1.52999 * 109.47482 * 180.02562 * 13 12 9 15 15 C 1.50701 * 109.47091 * 180.02562 * 14 13 12 16 16 H 1.07994 * 120.00172 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99792 * 179.97438 * 15 14 13 18 18 N 1.31511 * 119.99796 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99902 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47295 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.46953 * 119.99577 * 19 17 15 22 22 H 1.48493 * 109.47079 * 239.99573 * 19 17 15 23 23 C 1.47426 * 108.70606 * 358.94663 * 8 7 5 24 24 C 1.54913 * 104.82930 * 24.12615 * 23 8 7 25 25 H 1.08995 * 111.00761 * 81.06678 * 24 23 8 26 26 C 1.53004 * 111.00407 * 204.92167 * 24 23 8 27 27 H 1.09001 * 109.46947 * 300.00778 * 1 2 3 28 28 H 1.09004 * 109.46384 * 60.00577 * 1 2 3 29 29 H 1.08993 * 109.47340 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 298.30798 * 6 5 3 31 31 H 1.09001 * 109.46832 * 178.30989 * 6 5 3 32 32 H 1.09004 * 109.47261 * 58.30970 * 6 5 3 33 33 H 1.09001 * 109.88687 * 338.69147 * 7 5 3 34 34 H 1.09003 * 109.87981 * 99.69852 * 7 5 3 35 35 H 1.08999 * 109.47148 * 300.00179 * 12 9 8 36 36 H 1.08998 * 109.47582 * 60.00012 * 12 9 8 37 37 H 1.09008 * 109.46770 * 299.99939 * 13 12 9 38 38 H 1.08994 * 109.47473 * 59.99651 * 13 12 9 39 39 H 1.09008 * 109.46804 * 299.99594 * 14 13 12 40 40 H 1.08994 * 109.47317 * 59.99231 * 14 13 12 41 41 H 0.97002 * 119.99932 * 179.97438 * 18 17 15 42 42 H 1.09002 * 110.36978 * 142.95985 * 23 8 7 43 43 H 1.09000 * 110.36862 * 265.29024 * 23 8 7 44 44 H 1.08999 * 109.46945 * 172.19803 * 26 24 23 45 45 H 1.09004 * 109.46833 * 292.19418 * 26 24 23 46 46 H 1.09000 * 109.47131 * 52.19251 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 6 4.1437 0.5726 -1.2301 7 6 4.1443 0.6682 1.2966 8 7 5.2725 1.5156 1.7098 9 16 6.2038 1.2915 3.0607 10 8 6.6915 2.5900 3.3695 11 8 5.3532 0.5951 3.9611 12 6 7.5569 0.2189 2.5048 13 6 8.4975 -0.0650 3.6777 14 6 9.6391 -0.9691 3.2087 15 6 10.5652 -1.2492 4.3641 16 1 10.3602 -0.8245 5.3357 17 6 11.6742 -2.0478 4.1809 18 7 11.9235 -2.5654 2.9979 19 14 12.8224 -2.3944 5.6129 20 1 12.3237 -1.6994 6.8268 21 1 12.8721 -3.8570 5.8647 22 1 14.1845 -1.9019 5.2856 23 6 5.4369 2.5984 0.7229 24 6 4.0427 2.7501 0.0649 25 1 3.3789 3.3480 0.6892 26 6 4.1606 3.3498 -1.3378 27 1 -0.3633 0.5140 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 3.8705 -0.4824 -1.2081 31 1 5.2297 0.6669 -1.2261 32 1 3.7424 1.0332 -2.1329 33 1 3.3814 0.6612 2.0750 34 1 4.4906 -0.3480 1.1080 35 1 7.1469 -0.7200 2.1329 36 1 8.1097 0.7151 1.7072 37 1 8.9075 0.8739 4.0500 38 1 7.9445 -0.5614 4.4750 39 1 9.2294 -1.9081 2.8361 40 1 10.1920 -0.4724 2.4115 41 1 12.7039 -3.1269 2.8689 42 1 5.7243 3.5247 1.2204 43 1 6.1807 2.3212 -0.0240 44 1 3.1884 3.3176 -1.8296 45 1 4.4961 4.3842 -1.2636 46 1 4.8813 2.7749 -1.9193 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374320123.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:31 Heat of formation + Delta-G solvation = -194.595558 kcal Electronic energy + Delta-G solvation = -27590.528482 eV Core-core repulsion = 23606.099130 eV Total energy + Delta-G solvation = -3984.429352 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.07482 -39.86335 -38.27177 -37.52321 -37.11192 -36.46306 -34.27854 -34.15639 -32.34588 -29.65754 -28.64016 -27.63928 -27.09302 -25.59711 -24.53006 -22.56993 -22.26884 -20.27453 -20.06107 -18.95563 -18.55896 -18.34091 -17.64523 -17.51941 -17.24228 -17.14304 -16.48620 -16.22352 -15.70962 -15.49217 -15.00465 -14.74597 -14.50172 -14.40168 -14.11111 -13.88365 -13.77004 -13.55006 -13.40755 -13.36204 -13.24557 -13.19611 -13.02052 -12.94353 -12.77137 -12.74968 -12.69768 -12.60468 -12.15954 -12.05033 -11.86064 -11.75428 -11.74795 -11.58920 -11.37931 -11.36216 -11.09667 -10.56993 -10.02356 -8.22210 -6.32620 -0.87000 1.03811 1.39974 1.41099 1.51636 1.53953 1.73647 2.40391 2.76711 2.88028 3.11575 3.25297 3.30531 3.67736 3.74784 3.89583 3.89699 4.01425 4.22135 4.28755 4.32194 4.39189 4.41498 4.46098 4.59709 4.64964 4.65844 4.71017 4.78792 4.85076 4.87365 4.95362 4.99674 5.05613 5.10868 5.20321 5.22055 5.26619 5.35623 5.46752 5.47395 5.64575 5.80626 6.20841 6.62136 6.83082 7.36620 8.89372 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.020522 B = 0.002539 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.071215 B =11026.368250 C =11191.796554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.357 6.357 3 C 0.477 3.523 4 O -0.527 6.527 5 C -0.058 4.058 6 C -0.139 4.139 7 C 0.128 3.872 8 N -1.013 6.013 9 S 2.637 3.363 10 O -0.982 6.982 11 O -0.987 6.987 12 C -0.601 4.601 13 C -0.108 4.108 14 C 0.032 3.968 15 C -0.551 4.551 16 H 0.058 0.942 17 C 0.004 3.996 18 N -0.928 5.928 19 Si 0.961 3.039 20 H -0.265 1.265 21 H -0.277 1.277 22 H -0.277 1.277 23 C 0.110 3.890 24 C -0.079 4.079 25 H 0.077 0.923 26 C -0.139 4.139 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.131 0.869 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.105 0.895 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.005 0.995 40 H 0.005 0.995 41 H 0.265 0.735 42 H 0.085 0.915 43 H 0.105 0.895 44 H 0.056 0.944 45 H 0.071 0.929 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.873 7.169 -13.482 25.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.273 6.273 3 C 0.321 3.679 4 O -0.416 6.416 5 C -0.061 4.061 6 C -0.196 4.196 7 C 0.003 3.997 8 N -0.851 5.851 9 S 2.736 3.264 10 O -0.973 6.973 11 O -0.977 6.977 12 C -0.733 4.733 13 C -0.147 4.147 14 C -0.006 4.006 15 C -0.590 4.590 16 H 0.077 0.923 17 C -0.195 4.195 18 N -0.568 5.568 19 Si 0.786 3.214 20 H -0.189 1.189 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.014 4.014 24 C -0.099 4.099 25 H 0.096 0.904 26 C -0.196 4.196 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.149 0.851 30 H 0.099 0.901 31 H 0.112 0.888 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.123 0.877 35 H 0.167 0.833 36 H 0.169 0.831 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.023 0.977 40 H 0.024 0.976 41 H 0.074 0.926 42 H 0.104 0.896 43 H 0.123 0.877 44 H 0.075 0.925 45 H 0.090 0.910 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -21.148 7.721 -12.628 25.813 hybrid contribution 0.604 -0.564 0.436 0.934 sum -20.545 7.157 -12.192 24.939 Atomic orbital electron populations 1.23570 0.74790 1.05783 1.02503 1.86520 1.24930 1.32519 1.83356 1.23633 0.91746 0.81375 0.71185 1.90654 1.67493 1.37243 1.46224 1.21685 0.86347 0.99249 0.98815 1.21974 1.02925 1.00880 0.93777 1.21800 0.88279 0.95122 0.94513 1.58435 1.44379 1.39152 1.43150 1.04107 0.75067 0.74636 0.72615 1.93526 1.82344 1.38761 1.82639 1.93523 1.65342 1.76690 1.62157 1.30495 1.16043 1.17021 1.09739 1.21333 0.96902 1.01211 0.95259 1.18955 0.92106 0.93898 0.95647 1.21767 1.09495 1.30436 0.97252 0.92326 1.25901 0.99507 0.95501 0.98544 1.70065 1.28720 1.34146 1.23917 0.85456 0.78502 0.78090 0.79385 1.18930 1.20225 1.20218 1.22477 0.97952 0.89987 0.90952 1.22344 0.95546 0.92547 0.99512 0.90439 1.21770 1.02715 1.01823 0.93314 0.92369 0.91506 0.85095 0.90121 0.88845 0.90279 0.92090 0.87664 0.83309 0.83148 0.91604 0.91685 0.97672 0.97617 0.92620 0.89630 0.87733 0.92539 0.91011 0.89678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 113.37 1.20 1.51 16 2 O -0.36 -6.07 10.51 -51.42 -0.54 -6.61 16 3 C 0.48 9.31 6.48 71.24 0.46 9.78 16 4 O -0.53 -12.92 15.50 21.97 0.34 -12.58 16 5 C -0.06 -0.93 0.70 -51.74 -0.04 -0.97 16 6 C -0.14 -1.41 7.15 71.98 0.51 -0.90 16 7 C 0.13 2.44 6.06 86.73 0.53 2.97 16 8 N -1.01 -21.81 3.62 -506.42 -1.83 -23.64 16 9 S 2.64 76.20 5.65 -56.49 -0.32 75.88 16 10 O -0.98 -33.84 17.28 -127.65 -2.21 -36.04 16 11 O -0.99 -34.65 17.60 -127.65 -2.25 -36.89 16 12 C -0.60 -17.17 6.18 71.98 0.44 -16.73 16 13 C -0.11 -4.28 5.16 30.59 0.16 -4.12 16 14 C 0.03 1.63 4.97 29.85 0.15 1.77 16 15 C -0.55 -31.03 9.11 25.60 0.23 -30.79 16 16 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 17 C 0.00 0.21 5.46 84.66 0.46 0.68 16 18 N -0.93 -54.88 13.29 21.45 0.28 -54.59 16 19 Si 0.96 43.84 29.54 68.60 2.03 45.87 16 20 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 21 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 22 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 23 C 0.11 1.87 6.22 86.86 0.54 2.41 16 24 C -0.08 -1.28 2.58 -9.40 -0.02 -1.31 16 25 H 0.08 1.59 7.46 -2.39 -0.02 1.57 16 26 C -0.14 -1.57 8.27 71.98 0.60 -0.98 16 27 H 0.06 0.76 8.13 -2.39 -0.02 0.74 16 28 H 0.07 0.74 8.13 -2.38 -0.02 0.72 16 29 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.09 0.74 7.32 -2.39 -0.02 0.72 16 32 H 0.08 0.67 7.10 -2.38 -0.02 0.65 16 33 H 0.06 1.34 7.82 -2.39 -0.02 1.32 16 34 H 0.11 1.55 7.84 -2.39 -0.02 1.53 16 35 H 0.15 3.64 8.14 -2.39 -0.02 3.62 16 36 H 0.15 3.63 8.14 -2.39 -0.02 3.61 16 37 H 0.07 2.58 8.14 -2.38 -0.02 2.56 16 38 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 39 H 0.00 0.26 8.14 -2.38 -0.02 0.24 16 40 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 41 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 42 H 0.09 1.58 7.67 -2.39 -0.02 1.56 16 43 H 0.10 1.16 7.55 -2.39 -0.02 1.14 16 44 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 46 H 0.08 0.64 6.71 -2.39 -0.02 0.62 16 Total: -1.00 -77.67 386.43 1.68 -76.00 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: 0.95 Total: 9.30 kcal Atomic # 6 Polarization: -41.90 SS G_CDS: 5.22 Total: -36.68 kcal Atomic # 7 Polarization: -76.68 SS G_CDS: -1.55 Total: -78.23 kcal Atomic # 8 Polarization: -87.47 SS G_CDS: -4.65 Total: -92.13 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: 76.20 SS G_CDS: -0.32 Total: 75.88 kcal Total: -77.67 1.68 -76.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374320123.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.600 kcal (2) G-P(sol) polarization free energy of solvation -77.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds