Wall clock time and date at job start Tue Mar 31 2020 18:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47538 * 2 1 4 4 C 1.50696 * 109.47327 * 120.00690 * 2 1 3 5 5 H 1.07997 * 120.00587 * 119.99465 * 4 2 1 6 6 C 1.37882 * 119.99579 * 299.99540 * 4 2 1 7 7 N 1.31520 * 119.99954 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 120.00281 * 0.02562 * 6 4 2 9 9 H 1.48504 * 109.47380 * 89.99472 * 8 6 4 10 10 H 1.48490 * 109.47197 * 209.99867 * 8 6 4 11 11 H 1.48504 * 109.46987 * 329.99765 * 8 6 4 12 12 N 1.46507 * 109.46896 * 240.00517 * 2 1 3 13 13 C 1.46496 * 119.99662 * 299.99553 * 12 2 1 14 14 C 1.34775 * 119.99876 * 120.00234 * 12 2 1 15 15 O 1.21593 * 120.00151 * 359.97438 * 14 12 2 16 16 N 1.34777 * 119.99585 * 179.97438 * 14 12 2 17 17 C 1.40109 * 119.99659 * 179.71986 * 16 14 12 18 18 C 1.40490 * 125.89075 * 0.28010 * 17 16 14 19 19 C 1.35207 * 107.91700 * 179.97438 * 18 17 16 20 20 N 1.35864 * 107.72862 * 0.02562 * 19 18 17 21 21 C 1.39790 * 126.03614 * 179.97438 * 20 19 18 22 22 N 1.32319 * 119.70819 * 334.72339 * 21 20 19 23 23 C 1.31889 * 121.67242 * 179.71417 * 22 21 20 24 24 C 1.38145 * 120.88563 * 0.56694 * 23 22 21 25 25 C 1.38754 * 119.32796 * 359.72140 * 24 23 22 26 26 C 1.38625 * 118.45984 * 0.02562 * 25 24 23 27 27 F 1.35098 * 120.46818 * 180.02562 * 26 25 24 28 28 N 1.31210 * 125.89099 * 179.97438 * 17 16 14 29 29 H 1.09001 * 109.47339 * 59.99584 * 1 2 3 30 30 H 1.09006 * 109.47230 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47126 * 299.99506 * 1 2 3 32 32 H 0.96994 * 119.99991 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.47504 * 270.00259 * 13 12 2 34 34 H 1.09002 * 109.47236 * 30.00645 * 13 12 2 35 35 H 1.09003 * 109.46685 * 150.00239 * 13 12 2 36 36 H 0.97001 * 120.00485 * 0.02562 * 16 14 12 37 37 H 1.08004 * 126.04726 * 359.97438 * 18 17 16 38 38 H 1.08000 * 126.13482 * 179.97438 * 19 18 17 39 39 H 1.07987 * 119.55576 * 180.29163 * 23 22 21 40 40 H 1.08003 * 120.33515 * 179.70452 * 24 23 22 41 41 H 1.07998 * 120.76915 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 2.1381 -0.8592 3.5565 8 14 0.6249 1.2789 2.6542 9 1 -0.8028 0.8726 2.6998 10 1 0.9760 1.9948 3.9069 11 1 0.8471 2.1764 1.4922 12 7 2.0183 -0.6905 -1.1963 13 6 1.6644 -2.0931 -1.4281 14 6 2.7932 -0.0355 -2.0834 15 8 3.0866 1.1287 -1.8911 16 7 3.2428 -0.6709 -3.1836 17 6 4.0434 0.0117 -4.1088 18 6 4.4557 1.3512 -4.0109 19 6 5.2126 1.6338 -5.0951 20 7 5.2787 0.5111 -5.8574 21 6 5.9651 0.3783 -7.0680 22 7 6.1937 1.4478 -7.8128 23 6 6.8421 1.3679 -8.9586 24 6 7.2993 0.1531 -9.4315 25 6 7.0760 -0.9946 -8.6844 26 6 6.3962 -0.8783 -7.4819 27 9 6.1571 -1.9693 -6.7219 28 7 4.5422 -0.4913 -5.2132 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.9036 -0.5281 4.4374 33 1 2.4157 -2.7376 -0.9719 34 1 0.6904 -2.3001 -0.9848 35 1 1.6237 -2.2850 -2.5003 36 1 3.0084 -1.5996 -3.3372 37 1 4.2114 2.0345 -3.2110 38 1 5.6799 2.5820 -5.3159 39 1 7.0139 2.2635 -9.5369 40 1 7.8251 0.0973 -10.3732 41 1 7.4236 -1.9563 -9.0318 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378286133.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:01 Heat of formation + Delta-G solvation = 88.958380 kcal Electronic energy + Delta-G solvation = -27726.324116 eV Core-core repulsion = 23559.871831 eV Total energy + Delta-G solvation = -4166.452285 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.12270 -41.64556 -40.38392 -39.56609 -35.99839 -34.85076 -33.48214 -32.70991 -32.19628 -30.49336 -30.00480 -29.01888 -26.43801 -25.15203 -24.48076 -24.01612 -22.50324 -21.51156 -20.37040 -19.24151 -18.41275 -17.84769 -17.70956 -17.47340 -16.75202 -16.37527 -16.10279 -15.76066 -15.52239 -15.16687 -14.71139 -14.35097 -14.32567 -13.82295 -13.64475 -13.43373 -13.33748 -13.10014 -12.98815 -12.72990 -12.61556 -12.25246 -11.89075 -11.67375 -11.40674 -11.11079 -10.83479 -10.69198 -10.38158 -10.26354 -10.15968 -9.67011 -9.55666 -9.51975 -9.28945 -8.90869 -8.64830 -8.15701 -7.74249 -6.15483 -4.16613 0.21694 0.51384 1.71326 1.87683 2.76916 2.92240 3.15272 3.23152 3.37233 3.39369 3.56729 3.76309 3.87723 4.12121 4.22934 4.34200 4.35884 4.53496 4.85896 5.03945 5.14763 5.17576 5.36443 5.44805 5.46192 5.61624 5.75467 5.88389 5.95326 6.11606 6.21569 6.29313 6.33560 6.43985 6.63621 6.81501 6.87449 6.99105 7.06399 7.27024 7.37415 7.59036 7.73637 8.29051 8.44917 8.85096 8.95091 9.44740 10.97180 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.029498 B = 0.002390 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.975821 B =11712.007602 C =12138.175280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.245 3.755 3 H 0.067 0.933 4 C -0.529 4.529 5 H 0.079 0.921 6 C 0.076 3.924 7 N -0.894 5.894 8 Si 0.883 3.117 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.593 5.593 13 C 0.083 3.917 14 C 0.709 3.291 15 O -0.571 6.571 16 N -0.650 5.650 17 C 0.351 3.649 18 C -0.241 4.241 19 C 0.079 3.921 20 N -0.334 5.334 21 C 0.359 3.641 22 N -0.481 5.481 23 C 0.122 3.878 24 C -0.163 4.163 25 C -0.090 4.090 26 C 0.056 3.944 27 F -0.108 7.108 28 N -0.317 5.317 29 H 0.035 0.965 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.266 0.734 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.411 0.589 37 H 0.187 0.813 38 H 0.184 0.816 39 H 0.173 0.827 40 H 0.151 0.849 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.955 0.636 -26.481 27.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.143 3.857 3 H 0.084 0.916 4 C -0.567 4.567 5 H 0.097 0.903 6 C -0.127 4.127 7 N -0.531 5.531 8 Si 0.713 3.287 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.187 1.187 12 N -0.327 5.327 13 C -0.061 4.061 14 C 0.410 3.590 15 O -0.447 6.447 16 N -0.303 5.303 17 C 0.091 3.909 18 C -0.270 4.270 19 C -0.060 4.060 20 N -0.114 5.114 21 C 0.130 3.870 22 N -0.194 5.194 23 C -0.037 4.037 24 C -0.184 4.184 25 C -0.117 4.117 26 C 0.031 3.969 27 F -0.087 7.087 28 N -0.145 5.145 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.068 0.932 36 H 0.249 0.751 37 H 0.204 0.796 38 H 0.201 0.799 39 H 0.190 0.810 40 H 0.169 0.831 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 7.892 1.239 -26.425 27.606 hybrid contribution -0.549 -0.225 0.518 0.787 sum 7.343 1.014 -25.907 26.947 Atomic orbital electron populations 1.22489 0.98981 1.01177 0.99459 1.19290 0.89840 0.95030 0.81514 0.91557 1.21152 1.32803 1.14359 0.88397 0.90277 1.24861 0.95682 0.96598 0.95588 1.69872 1.45095 1.40181 0.97986 0.86920 0.80379 0.83826 0.77601 1.20401 1.22131 1.18654 1.47173 1.50635 1.11895 1.22990 1.21619 1.02700 0.82794 0.98946 1.15690 0.79542 0.84787 0.78947 1.90791 1.62208 1.15325 1.76420 1.42067 1.51679 1.15524 1.21015 1.19088 0.91470 0.91558 0.88831 1.22221 1.05738 0.96487 1.02548 1.22899 0.99795 0.92168 0.91119 1.45017 1.41163 1.09623 1.15638 1.17715 0.94058 0.89095 0.86178 1.67049 1.15774 1.29967 1.06641 1.22635 0.92390 0.98344 0.90281 1.22070 1.02276 0.92248 1.01799 1.21649 0.96649 1.01364 0.92010 1.18179 1.02480 0.83436 0.92807 1.91618 1.92156 1.50670 1.74218 1.77654 1.17490 1.09817 1.09571 0.94633 0.92460 0.92933 0.92397 0.92358 0.90021 0.93223 0.75113 0.79623 0.79929 0.80950 0.83139 0.82723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 8.65 37.16 0.32 -3.08 16 2 C 0.25 5.77 2.23 -69.08 -0.15 5.62 16 3 H 0.07 1.73 5.96 -51.93 -0.31 1.42 16 4 C -0.53 -14.37 8.95 -34.44 -0.31 -14.67 16 5 H 0.08 2.32 7.89 -52.49 -0.41 1.91 16 6 C 0.08 2.13 5.45 -17.82 -0.10 2.03 16 7 N -0.89 -26.68 13.96 55.43 0.77 -25.90 16 8 Si 0.88 21.48 24.37 -169.99 -4.14 17.34 16 9 H -0.28 -6.44 6.87 56.52 0.39 -6.05 16 10 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 11 H -0.26 -6.25 6.53 56.52 0.37 -5.89 16 12 N -0.59 -11.97 2.75 -181.01 -0.50 -12.46 16 13 C 0.08 1.31 9.44 59.84 0.57 1.88 16 14 C 0.71 14.34 8.25 -86.92 -0.72 13.63 16 15 O -0.57 -13.11 12.78 5.28 0.07 -13.05 16 16 N -0.65 -10.98 5.31 -15.51 -0.08 -11.07 16 17 C 0.35 6.08 8.10 -154.41 -1.25 4.83 16 18 C -0.24 -4.03 9.60 -39.81 -0.38 -4.41 16 19 C 0.08 1.12 11.18 -16.85 -0.19 0.93 16 20 N -0.33 -5.03 3.77 -12.07 -0.05 -5.07 16 21 C 0.36 4.56 7.41 -154.31 -1.14 3.41 16 22 N -0.48 -5.07 10.01 -12.24 -0.12 -5.19 16 23 C 0.12 0.78 11.17 -17.56 -0.20 0.58 16 24 C -0.16 -0.81 10.10 -39.42 -0.40 -1.21 16 25 C -0.09 -0.63 10.16 -39.25 -0.40 -1.03 16 26 C 0.06 0.63 7.30 -39.10 -0.29 0.34 16 27 F -0.11 -1.46 15.90 2.25 0.04 -1.42 16 28 N -0.32 -5.28 11.15 31.44 0.35 -4.93 16 29 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 1.10 6.66 -51.93 -0.35 0.76 16 31 H 0.05 1.15 3.27 -51.93 -0.17 0.98 16 32 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.08 1.26 6.43 -51.93 -0.33 0.93 16 35 H 0.05 0.60 6.36 -51.93 -0.33 0.27 16 36 H 0.41 5.82 6.55 -40.82 -0.27 5.55 16 37 H 0.19 3.35 5.90 -52.48 -0.31 3.04 16 38 H 0.18 1.99 8.06 -52.49 -0.42 1.56 16 39 H 0.17 0.50 8.06 -52.49 -0.42 0.07 16 40 H 0.15 0.21 8.06 -52.48 -0.42 -0.21 16 41 H 0.16 0.67 8.06 -52.49 -0.42 0.24 16 LS Contribution 344.35 15.07 5.19 5.19 Total: -1.00 -34.77 344.35 -7.31 -42.07 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -4.20 Total: 5.65 kcal Atomic # 6 Polarization: 13.48 SS G_CDS: -4.63 Total: 8.85 kcal Atomic # 7 Polarization: -65.00 SS G_CDS: 0.38 Total: -64.63 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.07 Total: -13.05 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.14 Total: 17.34 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.77 -7.31 -42.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378286133.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.031 kcal (2) G-P(sol) polarization free energy of solvation -34.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds