Wall clock time and date at job start Tue Mar 31 2020 18:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47538 * 2 1 4 4 C 1.50696 * 109.47327 * 120.00690 * 2 1 3 5 5 H 1.07997 * 120.00587 * 119.99465 * 4 2 1 6 6 C 1.37882 * 119.99579 * 299.99540 * 4 2 1 7 7 N 1.31520 * 119.99954 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 120.00281 * 0.02562 * 6 4 2 9 9 H 1.48504 * 109.47380 * 89.99472 * 8 6 4 10 10 H 1.48490 * 109.47197 * 209.99867 * 8 6 4 11 11 H 1.48504 * 109.46987 * 329.99765 * 8 6 4 12 12 N 1.46507 * 109.46896 * 240.00517 * 2 1 3 13 13 C 1.46496 * 119.99662 * 299.99553 * 12 2 1 14 14 C 1.34775 * 119.99876 * 120.00234 * 12 2 1 15 15 O 1.21593 * 120.00151 * 359.97438 * 14 12 2 16 16 N 1.34777 * 119.99585 * 179.97438 * 14 12 2 17 17 C 1.40109 * 119.99659 * 179.71986 * 16 14 12 18 18 C 1.40490 * 125.89075 * 0.28010 * 17 16 14 19 19 C 1.35207 * 107.91700 * 179.97438 * 18 17 16 20 20 N 1.35864 * 107.72862 * 0.02562 * 19 18 17 21 21 C 1.39790 * 126.03614 * 179.97438 * 20 19 18 22 22 N 1.32319 * 119.70819 * 334.72339 * 21 20 19 23 23 C 1.31889 * 121.67242 * 179.71417 * 22 21 20 24 24 C 1.38145 * 120.88563 * 0.56694 * 23 22 21 25 25 C 1.38754 * 119.32796 * 359.72140 * 24 23 22 26 26 C 1.38625 * 118.45984 * 0.02562 * 25 24 23 27 27 F 1.35098 * 120.46818 * 180.02562 * 26 25 24 28 28 N 1.31210 * 125.89099 * 179.97438 * 17 16 14 29 29 H 1.09001 * 109.47339 * 59.99584 * 1 2 3 30 30 H 1.09006 * 109.47230 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47126 * 299.99506 * 1 2 3 32 32 H 0.96994 * 119.99991 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.47504 * 270.00259 * 13 12 2 34 34 H 1.09002 * 109.47236 * 30.00645 * 13 12 2 35 35 H 1.09003 * 109.46685 * 150.00239 * 13 12 2 36 36 H 0.97001 * 120.00485 * 0.02562 * 16 14 12 37 37 H 1.08004 * 126.04726 * 359.97438 * 18 17 16 38 38 H 1.08000 * 126.13482 * 179.97438 * 19 18 17 39 39 H 1.07987 * 119.55576 * 180.29163 * 23 22 21 40 40 H 1.08003 * 120.33515 * 179.70452 * 24 23 22 41 41 H 1.07998 * 120.76915 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 2.1381 -0.8592 3.5565 8 14 0.6249 1.2789 2.6542 9 1 -0.8028 0.8726 2.6998 10 1 0.9760 1.9948 3.9069 11 1 0.8471 2.1764 1.4922 12 7 2.0183 -0.6905 -1.1963 13 6 1.6644 -2.0931 -1.4281 14 6 2.7932 -0.0355 -2.0834 15 8 3.0866 1.1287 -1.8911 16 7 3.2428 -0.6709 -3.1836 17 6 4.0434 0.0117 -4.1088 18 6 4.4557 1.3512 -4.0109 19 6 5.2126 1.6338 -5.0951 20 7 5.2787 0.5111 -5.8574 21 6 5.9651 0.3783 -7.0680 22 7 6.1937 1.4478 -7.8128 23 6 6.8421 1.3679 -8.9586 24 6 7.2993 0.1531 -9.4315 25 6 7.0760 -0.9946 -8.6844 26 6 6.3962 -0.8783 -7.4819 27 9 6.1571 -1.9693 -6.7219 28 7 4.5422 -0.4913 -5.2132 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.9036 -0.5281 4.4374 33 1 2.4157 -2.7376 -0.9719 34 1 0.6904 -2.3001 -0.9848 35 1 1.6237 -2.2850 -2.5003 36 1 3.0084 -1.5996 -3.3372 37 1 4.2114 2.0345 -3.2110 38 1 5.6799 2.5820 -5.3159 39 1 7.0139 2.2635 -9.5369 40 1 7.8251 0.0973 -10.3732 41 1 7.4236 -1.9563 -9.0318 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378286133.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:00 Heat of formation + Delta-G solvation = 65.783098 kcal Electronic energy + Delta-G solvation = -27727.329072 eV Core-core repulsion = 23559.871831 eV Total energy + Delta-G solvation = -4167.457240 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.99677 -42.78511 -41.43682 -40.76172 -37.62092 -36.26910 -34.86937 -34.07855 -33.13582 -32.08334 -31.28746 -29.96799 -27.85647 -27.13369 -25.31506 -24.91857 -23.85555 -22.59965 -21.83491 -20.67079 -19.43765 -19.26323 -18.74088 -18.53845 -18.22126 -17.71143 -17.19272 -17.13335 -16.70104 -16.33739 -16.05660 -15.88378 -15.18901 -14.98387 -14.80936 -14.73880 -14.53583 -14.26971 -14.13305 -14.07323 -14.02646 -13.62610 -13.39469 -13.12384 -13.06353 -12.53788 -12.50411 -12.09065 -12.02049 -11.54740 -11.36413 -11.08752 -11.04935 -10.91410 -10.77657 -10.47134 -10.15307 -9.55169 -9.06164 -8.32768 -6.37823 -0.54560 -0.07914 0.62166 0.83374 1.29683 1.39539 1.45724 1.48248 1.61618 2.25316 2.30395 2.49349 2.75875 2.87786 3.02882 3.18365 3.49054 3.69040 3.90056 4.06873 4.12596 4.25264 4.38127 4.47091 4.54134 4.55722 4.59088 4.62019 4.70992 4.84384 4.90899 4.93929 5.00801 5.06809 5.21082 5.39442 5.48944 5.56262 5.66446 5.73560 5.94439 6.19021 6.34387 6.63883 6.67073 6.89591 7.24311 7.40751 8.83308 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.029498 B = 0.002390 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.975821 B =11712.007602 C =12138.175280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.249 3.751 3 H 0.039 0.961 4 C -0.526 4.526 5 H 0.044 0.956 6 C 0.022 3.978 7 N -0.940 5.940 8 Si 0.942 3.058 9 H -0.253 1.253 10 H -0.298 1.298 11 H -0.257 1.257 12 N -0.600 5.600 13 C 0.079 3.921 14 C 0.708 3.292 15 O -0.604 6.604 16 N -0.636 5.636 17 C 0.328 3.672 18 C -0.273 4.273 19 C 0.099 3.901 20 N -0.333 5.333 21 C 0.314 3.686 22 N -0.498 5.498 23 C 0.122 3.878 24 C -0.131 4.131 25 C -0.084 4.084 26 C 0.028 3.972 27 F -0.131 7.131 28 N -0.326 5.326 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.045 0.955 32 H 0.268 0.732 33 H 0.051 0.949 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.423 0.577 37 H 0.168 0.832 38 H 0.214 0.786 39 H 0.214 0.786 40 H 0.201 0.799 41 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.348 1.258 -30.703 31.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.145 3.855 3 H 0.057 0.943 4 C -0.565 4.565 5 H 0.062 0.938 6 C -0.177 4.177 7 N -0.580 5.580 8 Si 0.769 3.231 9 H -0.178 1.178 10 H -0.225 1.225 11 H -0.182 1.182 12 N -0.334 5.334 13 C -0.063 4.063 14 C 0.408 3.592 15 O -0.483 6.483 16 N -0.290 5.290 17 C 0.069 3.931 18 C -0.303 4.303 19 C -0.041 4.041 20 N -0.113 5.113 21 C 0.087 3.913 22 N -0.211 5.211 23 C -0.037 4.037 24 C -0.151 4.151 25 C -0.110 4.110 26 C 0.004 3.996 27 F -0.110 7.110 28 N -0.156 5.156 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.263 0.737 37 H 0.185 0.815 38 H 0.231 0.769 39 H 0.230 0.770 40 H 0.218 0.782 41 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 8.285 1.794 -30.717 31.865 hybrid contribution -0.394 -0.436 1.477 1.590 sum 7.891 1.358 -29.239 30.316 Atomic orbital electron populations 1.22343 0.96270 1.02540 1.00173 1.18971 0.91800 0.93353 0.81348 0.94266 1.21350 1.31782 1.13180 0.90180 0.93790 1.25660 0.97203 0.99580 0.95233 1.70007 1.47112 1.42229 0.98620 0.85965 0.79807 0.80087 0.77265 1.17805 1.22520 1.18197 1.47099 1.50792 1.13396 1.22064 1.21847 1.02653 0.80180 1.01668 1.15762 0.79365 0.84498 0.79543 1.90772 1.63283 1.16898 1.77335 1.41698 1.51355 1.15824 1.20165 1.19201 0.92520 0.92001 0.89402 1.22068 1.08215 0.96429 1.03575 1.23231 0.98129 0.92936 0.89846 1.45225 1.40560 1.09110 1.16454 1.17967 0.96372 0.90519 0.86402 1.67053 1.16658 1.29427 1.07949 1.23502 0.90572 1.00683 0.88908 1.22667 0.99495 0.90541 1.02409 1.22104 0.95033 1.03651 0.90207 1.18657 1.04182 0.82450 0.94339 1.91553 1.92644 1.51608 1.75159 1.77541 1.17674 1.11013 1.09324 0.92319 0.90846 0.93652 0.92269 0.93072 0.89342 0.89232 0.73730 0.81512 0.76948 0.76999 0.78204 0.79881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.27 8.65 71.98 0.62 -5.65 16 2 C 0.25 11.85 2.23 44.24 0.10 11.95 16 3 H 0.04 2.10 5.96 -2.39 -0.01 2.08 16 4 C -0.53 -29.49 8.95 25.60 0.23 -29.27 16 5 H 0.04 2.71 7.89 -2.91 -0.02 2.69 16 6 C 0.02 1.26 5.45 84.65 0.46 1.72 16 7 N -0.94 -57.84 13.96 21.45 0.30 -57.54 16 8 Si 0.94 44.67 24.37 68.60 1.67 46.34 16 9 H -0.25 -10.94 6.87 99.48 0.68 -10.26 16 10 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 11 H -0.26 -11.95 6.53 99.48 0.65 -11.30 16 12 N -0.60 -24.54 2.75 -844.84 -2.33 -26.87 16 13 C 0.08 2.45 9.44 127.77 1.21 3.66 16 14 C 0.71 29.50 8.25 179.05 1.48 30.97 16 15 O -0.60 -29.05 12.78 -4.01 -0.05 -29.11 16 16 N -0.64 -22.14 5.31 -321.23 -1.71 -23.84 16 17 C 0.33 11.81 8.10 133.37 1.08 12.89 16 18 C -0.27 -9.60 9.60 22.12 0.21 -9.39 16 19 C 0.10 2.85 11.18 83.37 0.93 3.79 16 20 N -0.33 -10.13 3.77 -192.10 -0.72 -10.86 16 21 C 0.31 7.70 7.41 132.82 0.98 8.69 16 22 N -0.50 -9.35 10.01 -192.65 -1.93 -11.28 16 23 C 0.12 1.02 11.17 84.66 0.95 1.97 16 24 C -0.13 -0.59 10.10 22.37 0.23 -0.37 16 25 C -0.08 -0.87 10.16 22.49 0.23 -0.64 16 26 C 0.03 0.60 7.30 22.58 0.16 0.77 16 27 F -0.13 -3.57 15.90 44.97 0.71 -2.85 16 28 N -0.33 -11.20 11.15 -54.43 -0.61 -11.81 16 29 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.07 2.69 6.66 -2.38 -0.02 2.68 16 31 H 0.05 1.89 3.27 -2.39 -0.01 1.88 16 32 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 33 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.09 2.63 6.43 -2.39 -0.02 2.62 16 35 H 0.09 2.04 6.36 -2.39 -0.02 2.03 16 36 H 0.42 12.05 6.55 -92.71 -0.61 11.44 16 37 H 0.17 6.48 5.90 -2.91 -0.02 6.46 16 38 H 0.21 4.50 8.06 -2.91 -0.02 4.48 16 39 H 0.21 -0.01 8.06 -2.92 -0.02 -0.03 16 40 H 0.20 -0.97 8.06 -2.91 -0.02 -1.00 16 41 H 0.18 0.80 8.06 -2.91 -0.02 0.78 16 Total: -1.00 -81.87 344.35 4.63 -77.23 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 0.42 Total: 19.49 kcal Atomic # 6 Polarization: 22.22 SS G_CDS: 8.87 Total: 31.09 kcal Atomic # 7 Polarization: -135.20 SS G_CDS: -6.99 Total: -142.19 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -0.05 Total: -29.11 kcal Atomic # 9 Polarization: -3.57 SS G_CDS: 0.71 Total: -2.85 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.67 Total: 46.34 kcal Total: -81.87 4.63 -77.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378286133.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.015 kcal (2) G-P(sol) polarization free energy of solvation -81.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds