Wall clock time and date at job start Tue Mar 31 2020 18:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46847 * 2 1 4 4 O 1.45200 * 109.47236 * 120.00095 * 2 1 3 5 5 C 1.34228 * 116.99431 * 150.00136 * 4 2 1 6 6 O 1.20822 * 120.00616 * 359.97438 * 5 4 2 7 7 C 1.50704 * 119.99673 * 180.02562 * 5 4 2 8 8 H 1.09004 * 109.47054 * 59.99553 * 7 5 4 9 9 C 1.53003 * 109.47228 * 300.00088 * 7 5 4 10 10 C 1.53001 * 109.47246 * 179.97438 * 7 5 4 11 11 N 1.46492 * 109.47061 * 184.99719 * 10 7 5 12 12 S 1.65596 * 120.00120 * 165.00213 * 11 10 7 13 13 O 1.42100 * 104.28094 * 181.07589 * 12 11 10 14 14 O 1.42102 * 104.27847 * 308.92964 * 12 11 10 15 15 C 1.81394 * 104.45159 * 65.00013 * 12 11 10 16 16 C 1.53002 * 109.47354 * 173.81549 * 15 12 11 17 17 C 1.50703 * 115.54909 * 65.19686 * 16 15 12 18 18 H 1.08000 * 119.99638 * 264.78368 * 17 16 15 19 19 C 1.37880 * 119.99745 * 84.78348 * 17 16 15 20 20 N 1.31509 * 120.00202 * 352.22769 * 19 17 16 21 21 Si 1.86805 * 119.99339 * 172.22605 * 19 17 16 22 22 H 1.48494 * 109.47444 * 60.00254 * 21 19 17 23 23 H 1.48500 * 109.46718 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47204 * 299.99747 * 21 19 17 25 25 C 1.52999 * 117.50048 * 279.52481 * 16 15 12 26 26 C 1.52999 * 117.49796 * 210.86360 * 16 15 12 27 27 H 1.09000 * 109.47056 * 299.99851 * 1 2 3 28 28 H 1.08996 * 109.47459 * 59.99958 * 1 2 3 29 29 H 1.08995 * 109.47146 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46690 * 240.00494 * 2 1 3 31 31 H 1.08996 * 109.47126 * 300.00246 * 3 2 1 32 32 H 1.09000 * 109.47171 * 60.00219 * 3 2 1 33 33 H 1.09002 * 109.46960 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.46732 * 300.00256 * 9 7 5 35 35 H 1.08996 * 109.47089 * 59.99470 * 9 7 5 36 36 H 1.08995 * 109.47286 * 179.97438 * 9 7 5 37 37 H 1.08997 * 109.47124 * 304.99812 * 10 7 5 38 38 H 1.08999 * 109.47006 * 65.00000 * 10 7 5 39 39 H 0.97002 * 120.00651 * 345.00372 * 11 10 7 40 40 H 1.09000 * 109.46989 * 293.81962 * 15 12 11 41 41 H 1.09000 * 109.47151 * 53.81553 * 15 12 11 42 42 H 0.97002 * 120.00014 * 185.02598 * 20 19 17 43 43 H 1.09001 * 117.49410 * 359.97438 * 25 16 15 44 44 H 1.08995 * 117.49692 * 145.02023 * 25 16 15 45 45 H 1.08999 * 117.49970 * 214.98104 * 26 16 15 46 46 H 1.09001 * 117.50001 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 3.1937 -1.3169 1.0850 6 8 3.8015 -1.2996 0.0409 7 6 3.7596 -2.0497 2.2741 8 1 3.0664 -2.8325 2.5820 9 6 3.9643 -1.0668 3.4287 10 6 5.1019 -2.6781 1.8945 11 7 5.5947 -3.4886 3.0108 12 16 6.8203 -4.5753 2.7674 13 8 7.0089 -5.1816 4.0386 14 8 6.3942 -5.3391 1.6475 15 6 8.2530 -3.5516 2.3316 16 6 9.4987 -4.4343 2.2303 17 6 9.4838 -5.4546 1.1213 18 1 9.1637 -6.4662 1.3226 19 6 9.8790 -5.0966 -0.1502 20 7 10.1220 -3.8353 -0.4326 21 14 10.0693 -6.4031 -1.4716 22 1 8.7691 -7.0895 -1.6800 23 1 10.5014 -5.7643 -2.7407 24 1 11.0894 -7.3942 -1.0446 25 6 10.2001 -4.8186 3.5346 26 6 10.8443 -3.8010 2.5897 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 3.1300 1.4426 -0.0005 34 1 4.6574 -0.2839 3.1207 35 1 3.0078 -0.6195 3.6989 36 1 4.3731 -1.5968 4.2889 37 1 4.9717 -3.3103 1.0162 38 1 5.8218 -1.8905 1.6718 39 1 5.2032 -3.3889 3.8927 40 1 8.0736 -3.0649 1.3729 41 1 8.4059 -2.7943 3.1005 42 1 10.3289 -3.5734 -1.3434 43 1 9.7744 -4.4422 4.4647 44 1 10.6512 -5.8093 3.5904 45 1 11.7189 -4.1227 2.0243 46 1 10.8422 -2.7555 2.8978 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451262657.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:27 Heat of formation + Delta-G solvation = -150.434341 kcal Electronic energy + Delta-G solvation = -27597.133925 eV Core-core repulsion = 23614.619547 eV Total energy + Delta-G solvation = -3982.514378 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.85558 -37.52212 -36.73656 -36.29531 -36.01698 -35.05945 -33.52019 -32.01713 -31.94627 -28.14621 -27.63846 -26.43542 -25.42579 -24.37784 -21.60506 -21.19866 -20.37313 -19.75120 -18.78958 -17.93101 -17.15292 -16.52146 -16.42403 -16.14197 -15.71718 -15.13670 -14.84686 -14.66215 -14.32690 -14.26260 -14.03997 -13.73389 -13.35879 -13.21750 -13.10104 -12.76339 -12.65660 -12.29155 -12.06360 -11.92198 -11.83320 -11.69236 -11.65395 -11.27669 -11.26124 -11.13153 -11.07346 -11.00101 -10.87600 -10.79571 -10.57403 -10.44630 -10.42089 -10.10232 -9.71540 -9.25608 -8.94150 -8.53330 -8.07498 -6.10740 -4.21556 1.05862 2.06121 2.40003 3.35507 3.37672 3.44230 3.47580 4.30128 4.40543 4.44858 4.47803 4.54990 4.59726 4.67937 4.81897 4.97426 5.04362 5.17144 5.17632 5.23005 5.34330 5.36156 5.41194 5.43975 5.54253 5.57214 5.68263 5.70564 5.80463 5.81761 5.90933 5.99108 6.10608 6.28090 6.30478 6.38886 6.63194 6.73456 7.00158 7.19358 7.28338 7.40775 7.60181 7.83473 8.22857 8.83553 9.49739 10.96857 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014247 B = 0.003269 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.856566 B = 8564.142312 C = 9512.325412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.077 3.923 3 C -0.170 4.170 4 O -0.352 6.352 5 C 0.468 3.532 6 O -0.496 6.496 7 C -0.090 4.090 8 H 0.118 0.882 9 C -0.146 4.146 10 C 0.130 3.870 11 N -1.133 6.133 12 S 2.608 3.392 13 O -0.973 6.973 14 O -0.948 6.948 15 C -0.553 4.553 16 C 0.044 3.956 17 C -0.519 4.519 18 H 0.068 0.932 19 C 0.083 3.917 20 N -0.874 5.874 21 Si 0.891 3.109 22 H -0.269 1.269 23 H -0.286 1.286 24 H -0.274 1.274 25 C -0.208 4.208 26 C -0.141 4.141 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.075 0.925 39 H 0.408 0.592 40 H 0.134 0.866 41 H 0.099 0.901 42 H 0.264 0.736 43 H 0.075 0.925 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.712 11.377 5.186 20.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.023 3.977 3 C -0.227 4.227 4 O -0.270 6.270 5 C 0.309 3.691 6 O -0.383 6.383 7 C -0.110 4.110 8 H 0.136 0.864 9 C -0.204 4.204 10 C 0.003 3.997 11 N -0.890 5.890 12 S 2.705 3.295 13 O -0.963 6.963 14 O -0.938 6.938 15 C -0.687 4.687 16 C 0.042 3.958 17 C -0.556 4.556 18 H 0.086 0.914 19 C -0.122 4.122 20 N -0.509 5.509 21 Si 0.717 3.283 22 H -0.194 1.194 23 H -0.211 1.211 24 H -0.199 1.199 25 C -0.245 4.245 26 C -0.181 4.181 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.111 0.889 38 H 0.093 0.907 39 H 0.242 0.758 40 H 0.153 0.847 41 H 0.118 0.882 42 H 0.074 0.926 43 H 0.093 0.907 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.479 10.564 4.580 20.103 hybrid contribution 0.221 0.308 -0.725 0.818 sum -16.258 10.872 3.855 19.935 Atomic orbital electron populations 1.21885 0.92398 1.03225 1.03100 1.22761 0.94944 0.92791 0.87227 1.22210 1.02363 0.95147 1.03006 1.86549 1.36577 1.62690 1.41151 1.23542 0.79247 0.76494 0.89822 1.90722 1.59078 1.57907 1.30550 1.21213 0.98313 0.98766 0.92728 0.86448 1.21816 1.03177 0.98633 0.96743 1.21074 0.93358 0.95524 0.89707 1.56041 1.55147 1.60417 1.17441 1.05155 0.75322 0.74851 0.74193 1.93507 1.86264 1.74152 1.42410 1.93543 1.79661 1.66724 1.53824 1.29976 1.16155 1.12194 1.10356 1.18265 0.87785 0.96212 0.93562 1.20486 1.46747 0.95648 0.92675 0.91388 1.24945 0.93435 0.95436 0.98412 1.69959 1.45521 1.15571 1.19828 0.86655 0.79162 0.81941 0.80515 1.19434 1.21121 1.19922 1.23198 1.07376 1.00164 0.93802 1.22551 0.98569 0.95058 1.01873 0.91416 0.90390 0.91633 0.89542 0.90714 0.91560 0.91782 0.91574 0.90978 0.90593 0.88910 0.90684 0.75836 0.84747 0.88197 0.92645 0.90682 0.89538 0.89599 0.91541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.57 37.16 0.36 -0.60 16 2 C 0.08 0.70 3.18 -26.73 -0.09 0.62 16 3 C -0.17 -1.34 9.55 37.16 0.35 -0.98 16 4 O -0.35 -3.73 9.78 -39.25 -0.38 -4.11 16 5 C 0.47 5.75 7.23 36.01 0.26 6.01 16 6 O -0.50 -7.71 15.14 -18.75 -0.28 -7.99 16 7 C -0.09 -0.95 2.93 -91.77 -0.27 -1.22 16 8 H 0.12 1.06 8.14 -51.93 -0.42 0.63 16 9 C -0.15 -1.19 9.00 37.16 0.33 -0.86 16 10 C 0.13 1.80 4.87 -4.05 -0.02 1.78 16 11 N -1.13 -16.18 5.76 -10.62 -0.06 -16.24 16 12 S 2.61 52.11 5.19 -107.50 -0.56 51.55 16 13 O -0.97 -20.91 18.08 -57.54 -1.04 -21.95 16 14 O -0.95 -22.72 17.16 -57.54 -0.99 -23.71 16 15 C -0.55 -11.59 5.93 37.16 0.22 -11.37 16 16 C 0.04 1.08 1.32 -155.66 -0.21 0.87 16 17 C -0.52 -14.32 8.18 -34.44 -0.28 -14.60 16 18 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 19 C 0.08 2.29 5.38 -17.82 -0.10 2.20 16 20 N -0.87 -24.33 12.98 55.43 0.72 -23.61 16 21 Si 0.89 21.68 29.55 -169.99 -5.02 16.65 16 22 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 25 C -0.21 -4.57 9.96 -26.69 -0.27 -4.84 16 26 C -0.14 -3.23 9.49 -26.69 -0.25 -3.48 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.09 0.90 7.16 -51.93 -0.37 0.52 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.50 8.11 -51.93 -0.42 0.08 16 36 H 0.08 0.53 6.90 -51.93 -0.36 0.18 16 37 H 0.09 1.49 7.51 -51.93 -0.39 1.10 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.41 4.58 7.37 -34.46 -0.25 4.33 16 40 H 0.13 2.96 8.14 -51.92 -0.42 2.54 16 41 H 0.10 1.74 8.09 -51.92 -0.42 1.32 16 42 H 0.26 7.05 8.32 -40.82 -0.34 6.71 16 43 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 44 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 45 H 0.09 2.07 8.14 -51.93 -0.42 1.65 16 46 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 LS Contribution 396.84 15.07 5.98 5.98 Total: -1.00 -34.46 396.84 -9.27 -43.73 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -7.68 Total: 6.18 kcal Atomic # 6 Polarization: -26.52 SS G_CDS: 0.05 Total: -26.47 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: 0.66 Total: -39.86 kcal Atomic # 8 Polarization: -55.07 SS G_CDS: -2.70 Total: -57.76 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 52.11 SS G_CDS: -0.56 Total: 51.55 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.46 -9.27 -43.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451262657.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.708 kcal (2) G-P(sol) polarization free energy of solvation -34.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds