Wall clock time and date at job start Tue Mar 31 2020 18:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46847 * 2 1 4 4 O 1.45200 * 109.47236 * 120.00095 * 2 1 3 5 5 C 1.34228 * 116.99431 * 150.00136 * 4 2 1 6 6 O 1.20822 * 120.00616 * 359.97438 * 5 4 2 7 7 C 1.50704 * 119.99673 * 180.02562 * 5 4 2 8 8 H 1.09004 * 109.47054 * 59.99553 * 7 5 4 9 9 C 1.53003 * 109.47228 * 300.00088 * 7 5 4 10 10 C 1.53001 * 109.47246 * 179.97438 * 7 5 4 11 11 N 1.46492 * 109.47061 * 184.99719 * 10 7 5 12 12 S 1.65596 * 120.00120 * 165.00213 * 11 10 7 13 13 O 1.42100 * 104.28094 * 181.07589 * 12 11 10 14 14 O 1.42102 * 104.27847 * 308.92964 * 12 11 10 15 15 C 1.81394 * 104.45159 * 65.00013 * 12 11 10 16 16 C 1.53002 * 109.47354 * 173.81549 * 15 12 11 17 17 C 1.50703 * 115.54909 * 65.19686 * 16 15 12 18 18 H 1.08000 * 119.99638 * 264.78368 * 17 16 15 19 19 C 1.37880 * 119.99745 * 84.78348 * 17 16 15 20 20 N 1.31509 * 120.00202 * 352.22769 * 19 17 16 21 21 Si 1.86805 * 119.99339 * 172.22605 * 19 17 16 22 22 H 1.48494 * 109.47444 * 60.00254 * 21 19 17 23 23 H 1.48500 * 109.46718 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47204 * 299.99747 * 21 19 17 25 25 C 1.52999 * 117.50048 * 279.52481 * 16 15 12 26 26 C 1.52999 * 117.49796 * 210.86360 * 16 15 12 27 27 H 1.09000 * 109.47056 * 299.99851 * 1 2 3 28 28 H 1.08996 * 109.47459 * 59.99958 * 1 2 3 29 29 H 1.08995 * 109.47146 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46690 * 240.00494 * 2 1 3 31 31 H 1.08996 * 109.47126 * 300.00246 * 3 2 1 32 32 H 1.09000 * 109.47171 * 60.00219 * 3 2 1 33 33 H 1.09002 * 109.46960 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.46732 * 300.00256 * 9 7 5 35 35 H 1.08996 * 109.47089 * 59.99470 * 9 7 5 36 36 H 1.08995 * 109.47286 * 179.97438 * 9 7 5 37 37 H 1.08997 * 109.47124 * 304.99812 * 10 7 5 38 38 H 1.08999 * 109.47006 * 65.00000 * 10 7 5 39 39 H 0.97002 * 120.00651 * 345.00372 * 11 10 7 40 40 H 1.09000 * 109.46989 * 293.81962 * 15 12 11 41 41 H 1.09000 * 109.47151 * 53.81553 * 15 12 11 42 42 H 0.97002 * 120.00014 * 185.02598 * 20 19 17 43 43 H 1.09001 * 117.49410 * 359.97438 * 25 16 15 44 44 H 1.08995 * 117.49692 * 145.02023 * 25 16 15 45 45 H 1.08999 * 117.49970 * 214.98104 * 26 16 15 46 46 H 1.09001 * 117.50001 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 3.1937 -1.3169 1.0850 6 8 3.8015 -1.2996 0.0409 7 6 3.7596 -2.0497 2.2741 8 1 3.0664 -2.8325 2.5820 9 6 3.9643 -1.0668 3.4287 10 6 5.1019 -2.6781 1.8945 11 7 5.5947 -3.4886 3.0108 12 16 6.8203 -4.5753 2.7674 13 8 7.0089 -5.1816 4.0386 14 8 6.3942 -5.3391 1.6475 15 6 8.2530 -3.5516 2.3316 16 6 9.4987 -4.4343 2.2303 17 6 9.4838 -5.4546 1.1213 18 1 9.1637 -6.4662 1.3226 19 6 9.8790 -5.0966 -0.1502 20 7 10.1220 -3.8353 -0.4326 21 14 10.0693 -6.4031 -1.4716 22 1 8.7691 -7.0895 -1.6800 23 1 10.5014 -5.7643 -2.7407 24 1 11.0894 -7.3942 -1.0446 25 6 10.2001 -4.8186 3.5346 26 6 10.8443 -3.8010 2.5897 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 3.1300 1.4426 -0.0005 34 1 4.6574 -0.2839 3.1207 35 1 3.0078 -0.6195 3.6989 36 1 4.3731 -1.5968 4.2889 37 1 4.9717 -3.3103 1.0162 38 1 5.8218 -1.8905 1.6718 39 1 5.2032 -3.3889 3.8927 40 1 8.0736 -3.0649 1.3729 41 1 8.4059 -2.7943 3.1005 42 1 10.3289 -3.5734 -1.3434 43 1 9.7744 -4.4422 4.4647 44 1 10.6512 -5.8093 3.5904 45 1 11.7189 -4.1227 2.0243 46 1 10.8422 -2.7555 2.8978 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451262657.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:26 Heat of formation + Delta-G solvation = -173.724733 kcal Electronic energy + Delta-G solvation = -27598.143872 eV Core-core repulsion = 23614.619547 eV Total energy + Delta-G solvation = -3983.524325 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.78984 -38.56255 -38.44571 -37.93004 -37.16443 -36.77114 -34.28099 -34.08614 -32.92374 -29.84384 -28.20279 -27.49742 -27.32356 -25.33002 -22.97866 -22.38231 -21.58230 -21.21556 -20.35614 -18.95807 -18.55713 -18.32071 -17.47657 -17.17148 -16.99224 -16.75844 -16.68900 -15.97638 -15.64737 -15.41859 -15.19772 -14.89256 -14.84788 -14.12996 -14.11298 -13.75878 -13.64631 -13.43183 -13.16825 -13.13671 -13.08170 -13.02132 -12.90966 -12.85466 -12.84213 -12.73470 -12.53901 -12.44352 -12.21138 -12.13661 -11.90788 -11.87819 -11.59000 -11.55699 -11.35927 -10.87708 -10.59617 -10.53236 -9.87076 -8.19714 -6.34217 -0.53501 1.11025 1.37942 1.40349 1.47071 1.51270 2.09007 2.39242 2.92487 3.07688 3.36357 3.38928 3.45105 3.73958 3.81134 3.81777 3.95220 3.97074 4.13990 4.18115 4.29901 4.42340 4.53639 4.58974 4.61273 4.67468 4.75063 4.76691 4.83604 4.85404 4.86981 4.90590 4.99521 5.02803 5.13152 5.22216 5.22842 5.27806 5.48235 5.48666 5.60435 5.71365 6.16264 6.22787 6.67272 6.71941 7.38117 8.86854 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014247 B = 0.003269 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.856566 B = 8564.142312 C = 9512.325412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.066 3.934 3 C -0.166 4.166 4 O -0.347 6.347 5 C 0.469 3.531 6 O -0.538 6.538 7 C -0.084 4.084 8 H 0.138 0.862 9 C -0.144 4.144 10 C 0.125 3.875 11 N -1.109 6.109 12 S 2.627 3.373 13 O -0.987 6.987 14 O -0.995 6.995 15 C -0.554 4.554 16 C 0.010 3.990 17 C -0.537 4.537 18 H 0.050 0.950 19 C 0.042 3.958 20 N -0.892 5.892 21 Si 0.933 3.067 22 H -0.278 1.278 23 H -0.275 1.275 24 H -0.266 1.266 25 C -0.193 4.193 26 C -0.140 4.140 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.042 0.958 34 H 0.063 0.937 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.427 0.573 40 H 0.119 0.881 41 H 0.138 0.862 42 H 0.265 0.735 43 H 0.102 0.898 44 H 0.082 0.918 45 H 0.064 0.936 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.118 12.793 6.798 23.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.012 3.988 3 C -0.224 4.224 4 O -0.263 6.263 5 C 0.312 3.688 6 O -0.427 6.427 7 C -0.104 4.104 8 H 0.156 0.844 9 C -0.201 4.201 10 C -0.002 4.002 11 N -0.871 5.871 12 S 2.724 3.276 13 O -0.977 6.977 14 O -0.984 6.984 15 C -0.686 4.686 16 C 0.007 3.993 17 C -0.574 4.574 18 H 0.068 0.932 19 C -0.161 4.161 20 N -0.528 5.528 21 Si 0.759 3.241 22 H -0.203 1.203 23 H -0.200 1.200 24 H -0.191 1.191 25 C -0.231 4.231 26 C -0.179 4.179 27 H 0.096 0.904 28 H 0.115 0.885 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.111 0.889 32 H 0.098 0.902 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.265 0.735 40 H 0.137 0.863 41 H 0.156 0.844 42 H 0.074 0.926 43 H 0.120 0.880 44 H 0.101 0.899 45 H 0.083 0.917 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -17.890 11.979 6.226 22.412 hybrid contribution 0.590 -0.098 -1.210 1.350 sum -17.300 11.881 5.015 21.578 Atomic orbital electron populations 1.21894 0.90016 1.03535 1.04544 1.23047 0.96754 0.93053 0.85947 1.22202 1.00976 0.94601 1.04576 1.86543 1.35596 1.62366 1.41838 1.23874 0.79275 0.75995 0.89611 1.90713 1.60259 1.59537 1.32193 1.21218 0.96596 0.99721 0.92896 0.84410 1.21871 1.04311 0.98069 0.95861 1.21119 0.95581 0.94987 0.88513 1.55376 1.53589 1.59467 1.18669 1.04264 0.75524 0.74862 0.72967 1.93476 1.86736 1.75041 1.42495 1.93490 1.80530 1.68728 1.55701 1.29878 1.15244 1.12549 1.10956 1.18393 0.89728 0.97013 0.94131 1.20708 1.46647 0.95834 0.94220 0.93228 1.25525 0.93544 0.97009 1.00026 1.70011 1.46246 1.16399 1.20106 0.85985 0.78756 0.80316 0.79077 1.20336 1.19980 1.19059 1.23252 1.05976 0.99907 0.93920 1.22511 0.97045 0.96435 1.01873 0.90360 0.88526 0.91909 0.91516 0.88935 0.90222 0.93893 0.91808 0.89219 0.88937 0.91708 0.90391 0.73537 0.86286 0.84381 0.92622 0.87958 0.89946 0.91692 0.89315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.57 71.98 0.69 -0.86 16 2 C 0.07 1.15 3.18 30.60 0.10 1.24 16 3 C -0.17 -2.41 9.55 71.98 0.69 -1.73 16 4 O -0.35 -6.92 9.78 -51.40 -0.50 -7.42 16 5 C 0.47 11.32 7.23 71.24 0.51 11.83 16 6 O -0.54 -17.20 15.14 21.98 0.33 -16.87 16 7 C -0.08 -1.64 2.93 -11.54 -0.03 -1.67 16 8 H 0.14 2.14 8.14 -2.39 -0.02 2.12 16 9 C -0.14 -1.91 9.00 71.98 0.65 -1.26 16 10 C 0.12 3.38 4.87 86.38 0.42 3.80 16 11 N -1.11 -29.90 5.76 -187.51 -1.08 -30.98 16 12 S 2.63 103.49 5.19 -56.49 -0.29 103.20 16 13 O -0.99 -41.01 18.08 -127.65 -2.31 -43.32 16 14 O -0.99 -48.75 17.16 -127.65 -2.19 -50.94 16 15 C -0.55 -22.71 5.93 71.98 0.43 -22.29 16 16 C 0.01 0.46 1.32 -52.93 -0.07 0.39 16 17 C -0.54 -30.17 8.18 25.60 0.21 -29.96 16 18 H 0.05 2.88 7.83 -2.91 -0.02 2.86 16 19 C 0.04 2.35 5.38 84.66 0.46 2.81 16 20 N -0.89 -50.26 12.98 21.45 0.28 -49.98 16 21 Si 0.93 45.02 29.55 68.60 2.03 47.05 16 22 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 23 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 24 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 25 C -0.19 -8.22 9.96 30.62 0.30 -7.91 16 26 C -0.14 -6.25 9.49 30.62 0.29 -5.96 16 27 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 1.42 7.16 -2.39 -0.02 1.40 16 31 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.09 0.92 8.11 -2.39 -0.02 0.90 16 36 H 0.09 0.94 6.90 -2.39 -0.02 0.92 16 37 H 0.06 2.15 7.51 -2.39 -0.02 2.13 16 38 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.43 8.35 7.37 -96.75 -0.71 7.64 16 40 H 0.12 5.28 8.14 -2.39 -0.02 5.26 16 41 H 0.14 4.45 8.09 -2.39 -0.02 4.43 16 42 H 0.26 14.29 8.32 -92.71 -0.77 13.52 16 43 H 0.10 3.76 8.14 -2.39 -0.02 3.74 16 44 H 0.08 3.52 8.14 -2.39 -0.02 3.50 16 45 H 0.06 3.14 8.14 -2.39 -0.02 3.12 16 46 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 Total: -1.00 -75.86 396.84 1.15 -74.71 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: 0.25 Total: 26.14 kcal Atomic # 6 Polarization: -56.22 SS G_CDS: 4.64 Total: -51.58 kcal Atomic # 7 Polarization: -80.17 SS G_CDS: -0.80 Total: -80.97 kcal Atomic # 8 Polarization: -113.88 SS G_CDS: -4.67 Total: -118.55 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Atomic # 16 Polarization: 103.49 SS G_CDS: -0.29 Total: 103.20 kcal Total: -75.86 1.15 -74.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451262657.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.019 kcal (2) G-P(sol) polarization free energy of solvation -75.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds