Wall clock time and date at job start Tue Mar 31 2020 18:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00083 * 2 1 4 4 C 1.52999 * 109.47138 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.50996 * 55.10759 * 4 3 2 6 6 C 1.53718 * 109.48513 * 175.36016 * 4 3 2 7 7 N 1.47145 * 108.16083 * 172.40098 * 6 4 3 8 8 S 1.65603 * 120.98338 * 129.43453 * 7 6 4 9 9 O 1.42098 * 104.27783 * 153.64452 * 8 7 6 10 10 O 1.42107 * 104.27318 * 25.79225 * 8 7 6 11 11 C 1.81399 * 104.45024 * 269.71931 * 8 7 6 12 12 C 1.53003 * 109.47055 * 188.67048 * 11 8 7 13 13 C 1.50700 * 115.56445 * 319.93362 * 12 11 8 14 14 H 1.07994 * 120.00062 * 92.64694 * 13 12 11 15 15 C 1.37876 * 119.99941 * 272.65486 * 13 12 11 16 16 N 1.31513 * 119.99978 * 7.33255 * 15 13 12 17 17 Si 1.86798 * 120.00156 * 187.33823 * 15 13 12 18 18 H 1.48497 * 109.47221 * 89.99392 * 17 15 13 19 19 H 1.48505 * 109.46937 * 209.99969 * 17 15 13 20 20 H 1.48504 * 109.46916 * 329.99153 * 17 15 13 21 21 C 1.52999 * 117.49718 * 174.23731 * 12 11 8 22 22 C 1.52995 * 60.00271 * 252.51709 * 21 12 11 23 23 C 1.47158 * 118.03724 * 309.16328 * 7 6 4 24 24 C 1.53288 * 108.38378 * 50.78553 * 23 7 6 25 25 H 1.09003 * 109.51283 * 187.77579 * 24 23 7 26 26 C 1.53002 * 109.51613 * 67.67371 * 24 23 7 27 27 O 1.42959 * 109.51431 * 295.00392 * 4 3 2 28 28 H 1.09004 * 109.47205 * 60.00082 * 1 2 3 29 29 H 1.09003 * 109.47279 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47030 * 299.99741 * 1 2 3 31 31 H 1.08997 * 109.47061 * 59.99982 * 3 2 1 32 32 H 1.09002 * 109.47473 * 300.00475 * 3 2 1 33 33 H 1.08997 * 109.83400 * 52.72529 * 6 4 3 34 34 H 1.08997 * 109.75133 * 292.03330 * 6 4 3 35 35 H 1.09001 * 109.46810 * 68.67777 * 11 8 7 36 36 H 1.08996 * 109.47095 * 308.67865 * 11 8 7 37 37 H 0.97002 * 120.00393 * 175.00044 * 16 15 13 38 38 H 1.08999 * 117.49571 * 145.02191 * 21 12 11 39 39 H 1.09003 * 117.49948 * 0.02562 * 21 12 11 40 40 H 1.08995 * 117.50179 * 107.49188 * 22 21 12 41 41 H 1.08996 * 117.49858 * 252.51616 * 22 21 12 42 42 H 1.09005 * 109.67954 * 170.51048 * 23 7 6 43 43 H 1.09003 * 109.67908 * 291.02087 * 23 7 6 44 44 H 1.09002 * 109.46916 * 59.99781 * 26 24 23 45 45 H 1.08996 * 109.47619 * 179.97438 * 26 24 23 46 46 H 1.09001 * 109.46999 * 299.99913 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.8523 0.5698 -0.8419 6 6 4.1607 2.5839 -0.1166 7 7 5.6144 2.4539 0.0707 8 16 6.6764 3.1220 -1.0101 9 8 7.8524 3.3553 -0.2474 10 8 5.9540 4.1993 -1.5907 11 6 6.9603 1.8133 -2.2337 12 6 8.0938 2.2304 -3.1729 13 6 8.0937 3.6787 -3.5892 14 1 8.6621 4.4029 -3.0247 15 6 7.3677 4.0792 -4.6909 16 7 6.5628 3.2305 -5.2920 17 14 7.5275 5.8273 -5.3296 18 1 8.6182 5.8890 -6.3355 19 1 6.2486 6.2429 -5.9598 20 1 7.8426 6.7398 -4.2012 21 6 8.5783 1.2011 -4.1961 22 6 9.4510 1.5484 -2.9884 23 6 6.0967 1.7178 1.2502 24 6 5.3772 0.3654 1.3036 25 1 5.6157 -0.1372 2.2410 26 6 5.8322 -0.5024 0.1284 27 8 3.9660 0.5793 1.2221 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.7487 3.2386 0.6514 34 1 3.9533 2.9986 -1.1030 35 1 6.0502 1.6526 -2.8116 36 1 7.2333 0.8905 -1.7219 37 1 5.9981 3.5309 -6.0212 38 1 8.8968 1.5716 -5.1704 39 1 8.0891 0.2270 -4.2004 40 1 9.5363 0.8028 -2.1980 41 1 10.3437 2.1474 -3.1682 42 1 7.1720 1.5587 1.1691 43 1 5.8770 2.2872 2.1534 44 1 6.9089 -0.6613 0.1896 45 1 5.3206 -1.4640 0.1673 46 1 5.5918 -0.0001 -0.8086 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451444181.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:10 Heat of formation + Delta-G solvation = -129.729230 kcal Electronic energy + Delta-G solvation = -29204.579769 eV Core-core repulsion = 25222.963232 eV Total energy + Delta-G solvation = -3981.616537 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.83070 -37.72818 -36.76976 -36.26190 -35.07345 -34.54967 -32.97629 -32.08230 -29.81863 -28.26996 -27.38746 -26.11982 -25.51631 -24.52743 -22.73363 -21.21864 -20.06319 -19.45443 -18.45385 -17.25008 -16.92827 -16.62735 -16.48968 -15.80320 -15.57755 -15.30455 -15.08647 -14.75011 -14.66128 -14.35363 -14.13087 -13.93516 -13.70177 -13.12045 -12.77739 -12.51573 -12.29598 -12.08158 -12.00753 -11.85020 -11.72427 -11.54607 -11.37127 -11.19163 -11.17010 -11.04558 -10.99883 -10.90423 -10.55153 -10.45650 -10.26797 -10.21272 -10.04604 -9.80244 -9.65542 -8.98815 -8.64083 -8.55639 -8.12303 -6.19560 -4.34735 1.04416 3.26060 3.29810 3.35227 3.42931 3.55048 3.69081 4.36357 4.65320 4.71222 4.75596 4.80034 4.93478 5.00338 5.06094 5.10433 5.13311 5.18355 5.24673 5.25781 5.27515 5.32839 5.40615 5.47880 5.50111 5.65230 5.71139 5.77960 5.85714 5.91146 5.93150 6.16830 6.21678 6.30651 6.33494 6.58075 6.67104 6.73299 6.93809 6.99480 7.15986 7.17821 7.38479 7.74879 8.15367 8.74640 9.42378 10.87728 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014021 B = 0.004476 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.496541 B = 6254.012889 C = 6858.213608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.070 3.930 4 C 0.074 3.926 5 H 0.078 0.922 6 C 0.098 3.902 7 N -1.014 6.014 8 S 2.621 3.379 9 O -0.967 6.967 10 O -0.940 6.940 11 C -0.561 4.561 12 C 0.050 3.950 13 C -0.544 4.544 14 H 0.069 0.931 15 C 0.096 3.904 16 N -0.866 5.866 17 Si 0.892 3.108 18 H -0.278 1.278 19 H -0.282 1.282 20 H -0.267 1.267 21 C -0.141 4.141 22 C -0.204 4.204 23 C 0.092 3.908 24 C 0.075 3.925 25 H 0.112 0.888 26 C -0.194 4.194 27 O -0.362 6.362 28 H 0.041 0.959 29 H 0.084 0.916 30 H 0.040 0.960 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.103 0.897 35 H 0.126 0.874 36 H 0.097 0.903 37 H 0.265 0.735 38 H 0.086 0.914 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.098 0.902 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.737 -7.612 10.843 15.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C -0.008 4.008 4 C 0.014 3.986 5 H 0.096 0.904 6 C -0.028 4.028 7 N -0.850 5.850 8 S 2.719 3.281 9 O -0.958 6.958 10 O -0.931 6.931 11 C -0.693 4.693 12 C 0.048 3.952 13 C -0.582 4.582 14 H 0.087 0.913 15 C -0.111 4.111 16 N -0.500 5.500 17 Si 0.719 3.281 18 H -0.204 1.204 19 H -0.208 1.208 20 H -0.191 1.191 21 C -0.180 4.180 22 C -0.241 4.241 23 C -0.034 4.034 24 C 0.016 3.984 25 H 0.129 0.871 26 C -0.252 4.252 27 O -0.281 6.281 28 H 0.060 0.940 29 H 0.103 0.897 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.121 0.879 35 H 0.144 0.856 36 H 0.116 0.884 37 H 0.075 0.925 38 H 0.104 0.896 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.116 0.884 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.515 -6.965 10.889 15.478 hybrid contribution -0.214 0.423 -0.909 1.025 sum -8.728 -6.542 9.980 14.784 Atomic orbital electron populations 1.22740 0.81164 1.02695 0.99929 1.87935 1.19454 1.27316 1.95408 1.22494 0.91519 0.85421 1.01326 1.22560 0.92657 0.94057 0.89281 0.90373 1.21933 0.80552 0.96202 1.04138 1.58433 1.16436 1.72119 1.37991 1.04887 0.72851 0.76538 0.73813 1.93471 1.48280 1.84550 1.69494 1.93521 1.71908 1.49592 1.78044 1.30097 1.09813 1.15098 1.14299 1.18165 0.87197 0.93997 0.95884 1.20613 1.32944 0.90701 1.13928 0.91285 1.24914 0.93626 0.97543 0.95050 1.69957 1.22436 1.34651 1.22919 0.86575 0.77703 0.84573 0.79289 1.20356 1.20752 1.19112 1.22504 1.03031 0.98227 0.94212 1.23133 0.96499 1.03743 1.00752 1.22051 0.99678 0.92588 0.89064 1.22573 0.81500 0.94525 0.99778 0.87056 1.22550 1.02257 1.00775 0.99577 1.88011 1.21870 1.80976 1.37214 0.94047 0.89707 0.94116 0.92201 0.91261 0.90479 0.87863 0.85607 0.88421 0.92496 0.89565 0.91638 0.91332 0.89671 0.88375 0.90620 0.91140 0.91331 0.91434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.38 -4.74 10.67 -39.98 -0.43 -5.16 16 3 C 0.07 0.79 5.61 37.16 0.21 1.00 16 4 C 0.07 0.96 2.69 -26.36 -0.07 0.89 16 5 H 0.08 1.06 6.25 -51.93 -0.32 0.74 16 6 C 0.10 1.39 5.82 -3.32 -0.02 1.37 16 7 N -1.01 -16.28 2.79 -112.82 -0.31 -16.60 16 8 S 2.62 55.25 4.53 -107.50 -0.49 54.76 16 9 O -0.97 -22.28 16.81 -57.54 -0.97 -23.25 16 10 O -0.94 -23.00 16.11 -57.54 -0.93 -23.93 16 11 C -0.56 -11.60 5.73 37.16 0.21 -11.39 16 12 C 0.05 1.20 1.68 -155.66 -0.26 0.94 16 13 C -0.54 -14.87 7.03 -34.44 -0.24 -15.11 16 14 H 0.07 1.95 7.82 -52.49 -0.41 1.53 16 15 C 0.10 2.63 5.37 -17.82 -0.10 2.53 16 16 N -0.87 -23.69 12.86 55.43 0.71 -22.98 16 17 Si 0.89 21.66 29.55 -169.99 -5.02 16.64 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 21 C -0.14 -3.18 9.36 -26.73 -0.25 -3.43 16 22 C -0.20 -4.38 9.88 -26.73 -0.26 -4.64 16 23 C 0.09 1.23 5.88 -3.53 -0.02 1.21 16 24 C 0.08 0.89 3.92 -26.58 -0.10 0.79 16 25 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 26 C -0.19 -2.29 8.36 37.16 0.31 -1.97 16 27 O -0.36 -4.86 10.19 -39.98 -0.41 -5.26 16 28 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.10 1.50 7.22 -51.93 -0.37 1.13 16 35 H 0.13 2.63 8.14 -51.92 -0.42 2.21 16 36 H 0.10 1.68 6.63 -51.93 -0.34 1.34 16 37 H 0.27 6.92 8.32 -40.82 -0.34 6.58 16 38 H 0.09 2.07 8.14 -51.93 -0.42 1.65 16 39 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.07 1.29 8.09 -51.93 -0.42 0.87 16 41 H 0.08 1.82 8.14 -51.93 -0.42 1.39 16 42 H 0.10 1.29 7.22 -51.93 -0.37 0.91 16 43 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.07 0.88 4.68 -51.93 -0.24 0.64 16 LS Contribution 377.38 15.07 5.69 5.69 Total: -1.00 -33.28 377.38 -9.18 -42.46 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -7.55 Total: 4.08 kcal Atomic # 6 Polarization: -26.96 SS G_CDS: 0.52 Total: -26.44 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: 0.40 Total: -39.58 kcal Atomic # 8 Polarization: -54.88 SS G_CDS: -2.73 Total: -57.61 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 55.25 SS G_CDS: -0.49 Total: 54.76 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.28 -9.18 -42.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451444181.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.269 kcal (2) G-P(sol) polarization free energy of solvation -33.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds