Wall clock time and date at job start Tue Mar 31 2020 18:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00083 * 2 1 4 4 C 1.52999 * 109.47138 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.50996 * 55.10759 * 4 3 2 6 6 C 1.53718 * 109.48513 * 175.36016 * 4 3 2 7 7 N 1.47145 * 108.16083 * 172.40098 * 6 4 3 8 8 S 1.65603 * 120.98338 * 129.43453 * 7 6 4 9 9 O 1.42098 * 104.27783 * 153.64452 * 8 7 6 10 10 O 1.42107 * 104.27318 * 25.79225 * 8 7 6 11 11 C 1.81399 * 104.45024 * 269.71931 * 8 7 6 12 12 C 1.53003 * 109.47055 * 188.67048 * 11 8 7 13 13 C 1.50700 * 115.56445 * 319.93362 * 12 11 8 14 14 H 1.07994 * 120.00062 * 92.64694 * 13 12 11 15 15 C 1.37876 * 119.99941 * 272.65486 * 13 12 11 16 16 N 1.31513 * 119.99978 * 7.33255 * 15 13 12 17 17 Si 1.86798 * 120.00156 * 187.33823 * 15 13 12 18 18 H 1.48497 * 109.47221 * 89.99392 * 17 15 13 19 19 H 1.48505 * 109.46937 * 209.99969 * 17 15 13 20 20 H 1.48504 * 109.46916 * 329.99153 * 17 15 13 21 21 C 1.52999 * 117.49718 * 174.23731 * 12 11 8 22 22 C 1.52995 * 60.00271 * 252.51709 * 21 12 11 23 23 C 1.47158 * 118.03724 * 309.16328 * 7 6 4 24 24 C 1.53288 * 108.38378 * 50.78553 * 23 7 6 25 25 H 1.09003 * 109.51283 * 187.77579 * 24 23 7 26 26 C 1.53002 * 109.51613 * 67.67371 * 24 23 7 27 27 O 1.42959 * 109.51431 * 295.00392 * 4 3 2 28 28 H 1.09004 * 109.47205 * 60.00082 * 1 2 3 29 29 H 1.09003 * 109.47279 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47030 * 299.99741 * 1 2 3 31 31 H 1.08997 * 109.47061 * 59.99982 * 3 2 1 32 32 H 1.09002 * 109.47473 * 300.00475 * 3 2 1 33 33 H 1.08997 * 109.83400 * 52.72529 * 6 4 3 34 34 H 1.08997 * 109.75133 * 292.03330 * 6 4 3 35 35 H 1.09001 * 109.46810 * 68.67777 * 11 8 7 36 36 H 1.08996 * 109.47095 * 308.67865 * 11 8 7 37 37 H 0.97002 * 120.00393 * 175.00044 * 16 15 13 38 38 H 1.08999 * 117.49571 * 145.02191 * 21 12 11 39 39 H 1.09003 * 117.49948 * 0.02562 * 21 12 11 40 40 H 1.08995 * 117.50179 * 107.49188 * 22 21 12 41 41 H 1.08996 * 117.49858 * 252.51616 * 22 21 12 42 42 H 1.09005 * 109.67954 * 170.51048 * 23 7 6 43 43 H 1.09003 * 109.67908 * 291.02087 * 23 7 6 44 44 H 1.09002 * 109.46916 * 59.99781 * 26 24 23 45 45 H 1.08996 * 109.47619 * 179.97438 * 26 24 23 46 46 H 1.09001 * 109.46999 * 299.99913 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.8523 0.5698 -0.8419 6 6 4.1607 2.5839 -0.1166 7 7 5.6144 2.4539 0.0707 8 16 6.6764 3.1220 -1.0101 9 8 7.8524 3.3553 -0.2474 10 8 5.9540 4.1993 -1.5907 11 6 6.9603 1.8133 -2.2337 12 6 8.0938 2.2304 -3.1729 13 6 8.0937 3.6787 -3.5892 14 1 8.6621 4.4029 -3.0247 15 6 7.3677 4.0792 -4.6909 16 7 6.5628 3.2305 -5.2920 17 14 7.5275 5.8273 -5.3296 18 1 8.6182 5.8890 -6.3355 19 1 6.2486 6.2429 -5.9598 20 1 7.8426 6.7398 -4.2012 21 6 8.5783 1.2011 -4.1961 22 6 9.4510 1.5484 -2.9884 23 6 6.0967 1.7178 1.2502 24 6 5.3772 0.3654 1.3036 25 1 5.6157 -0.1372 2.2410 26 6 5.8322 -0.5024 0.1284 27 8 3.9660 0.5793 1.2221 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.7487 3.2386 0.6514 34 1 3.9533 2.9986 -1.1030 35 1 6.0502 1.6526 -2.8116 36 1 7.2333 0.8905 -1.7219 37 1 5.9981 3.5309 -6.0212 38 1 8.8968 1.5716 -5.1704 39 1 8.0891 0.2270 -4.2004 40 1 9.5363 0.8028 -2.1980 41 1 10.3437 2.1474 -3.1682 42 1 7.1720 1.5587 1.1691 43 1 5.8770 2.2872 2.1534 44 1 6.9089 -0.6613 0.1896 45 1 5.3206 -1.4640 0.1673 46 1 5.5918 -0.0001 -0.8086 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451444181.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:09 Heat of formation + Delta-G solvation = -153.457352 kcal Electronic energy + Delta-G solvation = -29205.608698 eV Core-core repulsion = 25222.963232 eV Total energy + Delta-G solvation = -3982.645465 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.84434 -38.58084 -38.56511 -37.99940 -36.78947 -35.75085 -34.12401 -33.94619 -30.79791 -29.91739 -28.27350 -27.62615 -26.91616 -25.60505 -23.69319 -22.96683 -21.51901 -20.92660 -19.84936 -18.78367 -18.32814 -17.93222 -17.54477 -17.03308 -16.82614 -16.72506 -16.56571 -16.20042 -15.77097 -15.60618 -15.50624 -15.14802 -15.00647 -14.83262 -14.02437 -13.80477 -13.68980 -13.38364 -13.25270 -13.10334 -13.03110 -12.94551 -12.86358 -12.84198 -12.64263 -12.52328 -12.45582 -12.29933 -12.12557 -12.05280 -11.95496 -11.65721 -11.27123 -11.15895 -10.86150 -10.59955 -10.52197 -10.02160 -9.69806 -8.25578 -6.43885 -0.56769 1.34054 1.36902 1.46432 1.87883 2.36981 2.65606 2.78631 3.02663 3.05901 3.26395 3.45501 3.58807 3.75852 3.96875 4.00913 4.04304 4.16256 4.21372 4.22953 4.32203 4.39705 4.46172 4.51228 4.56532 4.58057 4.60621 4.62857 4.71514 4.78930 4.84449 4.88965 4.90738 4.93452 4.97815 5.14204 5.18075 5.29004 5.39398 5.53076 5.60738 5.65552 6.17088 6.18270 6.26404 6.66036 7.33945 8.81139 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014021 B = 0.004476 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.496541 B = 6254.012889 C = 6858.213608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.069 3.931 4 C 0.078 3.922 5 H 0.070 0.930 6 C 0.093 3.907 7 N -1.008 6.008 8 S 2.629 3.371 9 O -0.993 6.993 10 O -0.985 6.985 11 C -0.551 4.551 12 C 0.013 3.987 13 C -0.560 4.560 14 H 0.046 0.954 15 C 0.058 3.942 16 N -0.882 5.882 17 Si 0.927 3.073 18 H -0.264 1.264 19 H -0.273 1.273 20 H -0.277 1.277 21 C -0.138 4.138 22 C -0.189 4.189 23 C 0.083 3.917 24 C 0.077 3.923 25 H 0.142 0.858 26 C -0.198 4.198 27 O -0.369 6.369 28 H 0.050 0.950 29 H 0.095 0.905 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.120 0.880 36 H 0.133 0.867 37 H 0.268 0.732 38 H 0.064 0.936 39 H 0.086 0.914 40 H 0.102 0.898 41 H 0.080 0.920 42 H 0.101 0.899 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.075 0.925 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.361 -9.076 12.064 17.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.328 6.328 3 C -0.008 4.008 4 C 0.018 3.982 5 H 0.088 0.912 6 C -0.033 4.033 7 N -0.846 5.846 8 S 2.728 3.272 9 O -0.984 6.984 10 O -0.975 6.975 11 C -0.684 4.684 12 C 0.011 3.989 13 C -0.597 4.597 14 H 0.065 0.935 15 C -0.147 4.147 16 N -0.517 5.517 17 Si 0.752 3.248 18 H -0.189 1.189 19 H -0.198 1.198 20 H -0.202 1.202 21 C -0.177 4.177 22 C -0.226 4.226 23 C -0.042 4.042 24 C 0.018 3.982 25 H 0.159 0.841 26 C -0.255 4.255 27 O -0.288 6.288 28 H 0.068 0.932 29 H 0.114 0.886 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.138 0.862 36 H 0.151 0.849 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.104 0.896 40 H 0.120 0.880 41 H 0.098 0.902 42 H 0.119 0.881 43 H 0.107 0.893 44 H 0.103 0.897 45 H 0.094 0.906 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.131 -8.424 12.102 17.343 hybrid contribution -0.034 0.837 -1.214 1.475 sum -9.165 -7.587 10.888 16.128 Atomic orbital electron populations 1.22934 0.79394 1.03813 1.00919 1.87882 1.21455 1.27799 1.95628 1.22525 0.90338 0.85483 1.02476 1.22500 0.93805 0.92782 0.89065 0.91207 1.22117 0.79351 0.97599 1.04216 1.57973 1.16629 1.72192 1.37786 1.04300 0.72562 0.76428 0.73907 1.93425 1.49779 1.85203 1.69975 1.93457 1.72711 1.52137 1.79195 1.29942 1.08387 1.16393 1.13701 1.18312 0.89781 0.92874 0.97895 1.20747 1.32616 0.92401 1.13967 0.93531 1.25444 0.93693 1.00148 0.95414 1.69989 1.22866 1.35527 1.23283 0.86034 0.78427 0.81519 0.78811 1.18912 1.19801 1.20211 1.22436 1.03398 0.98526 0.93344 1.23216 0.95021 1.03482 1.00851 1.22384 1.00183 0.93467 0.88153 1.22739 0.80577 0.93579 1.01261 0.84054 1.22592 1.03322 1.00887 0.98710 1.88013 1.22738 1.80841 1.37204 0.93153 0.88622 0.93006 0.91054 0.90125 0.88895 0.88875 0.86206 0.84899 0.92313 0.91779 0.89580 0.87972 0.90177 0.88068 0.89280 0.89744 0.90628 0.93071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.41 -9.43 10.67 -144.44 -1.54 -10.97 16 3 C 0.07 1.44 5.61 71.98 0.40 1.85 16 4 C 0.08 1.92 2.69 30.84 0.08 2.00 16 5 H 0.07 1.83 6.25 -2.39 -0.01 1.81 16 6 C 0.09 2.55 5.82 86.50 0.50 3.05 16 7 N -1.01 -31.32 2.79 -510.86 -1.42 -32.74 16 8 S 2.63 110.84 4.53 -56.49 -0.26 110.59 16 9 O -0.99 -45.69 16.81 -127.65 -2.15 -47.84 16 10 O -0.98 -49.37 16.11 -127.65 -2.06 -51.43 16 11 C -0.55 -22.39 5.73 71.98 0.41 -21.98 16 12 C 0.01 0.64 1.68 -52.93 -0.09 0.55 16 13 C -0.56 -31.11 7.03 25.60 0.18 -30.93 16 14 H 0.05 2.72 7.82 -2.91 -0.02 2.69 16 15 C 0.06 3.23 5.37 84.65 0.45 3.68 16 16 N -0.88 -48.70 12.86 21.45 0.28 -48.42 16 17 Si 0.93 44.66 29.55 68.60 2.03 46.69 16 18 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 19 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 20 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 21 C -0.14 -6.10 9.36 30.59 0.29 -5.82 16 22 C -0.19 -7.80 9.88 30.59 0.30 -7.50 16 23 C 0.08 2.04 5.88 86.35 0.51 2.55 16 24 C 0.08 1.60 3.92 30.69 0.12 1.72 16 25 H 0.14 2.12 8.14 -2.39 -0.02 2.10 16 26 C -0.20 -4.13 8.36 71.98 0.60 -3.53 16 27 O -0.37 -9.03 10.19 -144.44 -1.47 -10.50 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.09 2.74 7.22 -2.39 -0.02 2.72 16 35 H 0.12 5.00 8.14 -2.39 -0.02 4.98 16 36 H 0.13 4.29 6.63 -2.39 -0.02 4.28 16 37 H 0.27 14.05 8.32 -92.71 -0.77 13.28 16 38 H 0.06 3.08 8.14 -2.39 -0.02 3.06 16 39 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 40 H 0.10 3.50 8.09 -2.39 -0.02 3.48 16 41 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 42 H 0.10 2.43 7.22 -2.38 -0.02 2.42 16 43 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.05 1.24 4.68 -2.39 -0.01 1.23 16 Total: -1.00 -71.89 377.38 -0.62 -72.51 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: 0.96 Total: 24.82 kcal Atomic # 6 Polarization: -57.73 SS G_CDS: 5.01 Total: -52.71 kcal Atomic # 7 Polarization: -80.02 SS G_CDS: -1.15 Total: -81.17 kcal Atomic # 8 Polarization: -113.52 SS G_CDS: -7.22 Total: -120.73 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 16 Polarization: 110.84 SS G_CDS: -0.26 Total: 110.59 kcal Total: -71.89 -0.62 -72.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451444181.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.949 kcal (2) G-P(sol) polarization free energy of solvation -71.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds