Wall clock time and date at job start Tue Mar 31 2020 18:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42900 * 114.00017 * 2 1 4 4 C 1.53005 * 109.47026 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.51071 * 304.99068 * 4 3 2 6 6 C 1.53302 * 109.51082 * 184.89358 * 4 3 2 7 7 N 1.47164 * 108.37461 * 187.81977 * 6 4 3 8 8 S 1.65593 * 120.94498 * 230.51671 * 7 6 4 9 9 O 1.42095 * 104.27878 * 26.00853 * 8 7 6 10 10 O 1.42105 * 104.28002 * 153.86450 * 8 7 6 11 11 C 1.81404 * 104.45058 * 269.93589 * 8 7 6 12 12 C 1.52995 * 109.47023 * 173.93136 * 11 8 7 13 13 C 1.50705 * 115.55162 * 39.92105 * 12 11 8 14 14 H 1.07999 * 119.99708 * 264.78250 * 13 12 11 15 15 C 1.37872 * 120.00291 * 84.78378 * 13 12 11 16 16 N 1.31522 * 119.99954 * 353.00136 * 15 13 12 17 17 Si 1.86791 * 120.00364 * 173.00461 * 15 13 12 18 18 H 1.48508 * 109.47161 * 89.99686 * 17 15 13 19 19 H 1.48498 * 109.47391 * 209.99780 * 17 15 13 20 20 H 1.48505 * 109.47182 * 329.99780 * 17 15 13 21 21 C 1.52999 * 117.49982 * 254.20892 * 12 11 8 22 22 C 1.53006 * 60.00286 * 252.50954 * 21 12 11 23 23 C 1.47157 * 118.07315 * 50.45453 * 7 6 4 24 24 C 1.53285 * 108.38559 * 309.49641 * 23 7 6 25 25 H 1.08997 * 109.55702 * 292.35396 * 24 23 7 26 26 C 1.53002 * 109.51448 * 172.22694 * 24 23 7 27 27 O 1.42956 * 109.51576 * 65.09677 * 4 3 2 28 28 H 1.09007 * 109.46940 * 60.00316 * 1 2 3 29 29 H 1.08999 * 109.47439 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47512 * 300.00855 * 1 2 3 31 31 H 1.09003 * 109.46966 * 299.99398 * 3 2 1 32 32 H 1.08996 * 109.47570 * 59.99485 * 3 2 1 33 33 H 1.08996 * 109.68135 * 307.49328 * 6 4 3 34 34 H 1.09009 * 109.67816 * 68.04825 * 6 4 3 35 35 H 1.08989 * 109.47435 * 293.93476 * 11 8 7 36 36 H 1.09000 * 109.46721 * 53.93604 * 11 8 7 37 37 H 0.96997 * 119.99848 * 185.03402 * 16 15 13 38 38 H 1.08994 * 117.49992 * 0.02562 * 21 12 11 39 39 H 1.09009 * 117.50055 * 145.02813 * 21 12 11 40 40 H 1.08993 * 117.50116 * 252.51048 * 22 21 12 41 41 H 1.08998 * 117.49360 * 107.48646 * 22 21 12 42 42 H 1.08998 * 109.68233 * 189.76963 * 23 7 6 43 43 H 1.09002 * 109.67735 * 69.22235 * 23 7 6 44 44 H 1.09000 * 109.46769 * 300.25407 * 26 24 23 45 45 H 1.08996 * 109.47257 * 60.24990 * 26 24 23 46 46 H 1.09004 * 109.47479 * 180.25835 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.8515 0.5687 0.8426 6 6 4.1595 2.5794 0.1239 7 7 5.6135 2.4556 -0.0669 8 16 6.6742 3.1223 1.0159 9 8 5.9464 3.1702 2.2354 10 8 7.8461 2.3280 0.8929 11 6 6.9714 4.7972 0.3858 12 6 7.8262 5.5750 1.3884 13 6 8.9374 4.7928 2.0398 14 1 8.7802 4.3320 3.0039 15 6 10.1547 4.6654 1.4052 16 7 10.3044 5.1064 0.1752 17 14 11.5914 3.8664 2.2922 18 1 11.5829 2.4044 2.0316 19 1 12.8645 4.4498 1.7981 20 1 11.4691 4.1097 3.7520 21 6 7.1294 6.6470 2.2289 22 6 8.0793 7.0565 1.1014 23 6 6.0970 1.7212 -1.2469 24 6 5.3786 0.3683 -1.3022 25 1 5.7019 -0.2510 -0.4655 26 6 5.7147 -0.3355 -2.6185 27 8 3.9672 0.5811 -1.2212 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6886 1.8463 -0.8901 32 1 1.6885 1.8465 0.8899 33 1 3.7442 3.2362 -0.6404 34 1 3.9517 2.9885 1.1127 35 1 7.4940 4.7389 -0.5688 36 1 6.0184 5.3078 0.2478 37 1 11.1373 4.9519 -0.2974 38 1 6.0620 6.7978 2.0678 39 1 7.4747 6.7866 3.2534 40 1 9.0493 7.4653 1.3841 41 1 7.6368 7.4769 0.1984 42 1 7.1723 1.5628 -1.1655 43 1 5.8767 2.2911 -2.1496 44 1 5.3926 0.2851 -3.4547 45 1 6.7908 -0.4974 -2.6795 46 1 5.1998 -1.2954 -2.6591 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451444182.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:13 Heat of formation + Delta-G solvation = -132.506852 kcal Electronic energy + Delta-G solvation = -28602.832602 eV Core-core repulsion = 24621.095619 eV Total energy + Delta-G solvation = -3981.736984 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.60721 -37.74231 -36.75421 -36.26302 -35.04820 -34.55980 -33.34236 -32.07399 -29.81352 -28.21035 -27.34210 -26.05224 -25.50279 -24.41464 -22.06993 -21.23236 -20.85823 -19.56179 -18.34806 -17.22530 -17.00605 -16.68758 -16.45719 -15.71660 -15.58365 -15.40163 -15.09790 -14.92035 -14.58178 -14.22525 -13.96478 -13.76660 -13.55561 -13.09073 -12.80568 -12.58202 -12.23347 -12.20819 -12.10175 -11.82906 -11.77206 -11.59284 -11.47679 -11.17790 -11.04111 -11.02751 -10.94057 -10.84034 -10.53800 -10.44738 -10.35719 -10.14685 -10.02536 -9.85565 -9.72408 -8.98988 -8.65103 -8.55175 -8.11875 -6.18277 -4.33207 1.05825 3.27629 3.32520 3.38805 3.41649 3.50530 3.63058 4.38012 4.67181 4.70681 4.79890 4.84195 4.93678 4.99205 5.06326 5.11859 5.13308 5.15302 5.20958 5.27248 5.28562 5.34596 5.44109 5.45322 5.52320 5.65116 5.75332 5.76207 5.84528 5.92024 5.97060 6.12899 6.22733 6.28805 6.34376 6.58755 6.66238 6.73780 6.93398 6.95804 7.15420 7.21899 7.36655 7.76255 8.15885 8.75544 9.44133 10.89261 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.017580 B = 0.003820 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.321875 B = 7328.861591 C = 8083.915948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.071 3.929 4 C 0.084 3.916 5 H 0.073 0.927 6 C 0.091 3.909 7 N -1.016 6.016 8 S 2.621 3.379 9 O -0.971 6.971 10 O -0.936 6.936 11 C -0.557 4.557 12 C 0.050 3.950 13 C -0.544 4.544 14 H 0.069 0.931 15 C 0.098 3.902 16 N -0.867 5.867 17 Si 0.890 3.110 18 H -0.270 1.270 19 H -0.284 1.284 20 H -0.270 1.270 21 C -0.204 4.204 22 C -0.144 4.144 23 C 0.088 3.912 24 C 0.077 3.923 25 H 0.065 0.935 26 C -0.142 4.142 27 O -0.367 6.367 28 H 0.041 0.959 29 H 0.085 0.915 30 H 0.040 0.960 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.127 0.873 36 H 0.095 0.905 37 H 0.265 0.735 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.107 0.893 43 H 0.072 0.928 44 H 0.064 0.936 45 H 0.075 0.925 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.222 -6.082 -5.670 17.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C -0.006 4.006 4 C 0.024 3.976 5 H 0.091 0.909 6 C -0.035 4.035 7 N -0.852 5.852 8 S 2.719 3.281 9 O -0.962 6.962 10 O -0.926 6.926 11 C -0.690 4.690 12 C 0.048 3.952 13 C -0.581 4.581 14 H 0.087 0.913 15 C -0.110 4.110 16 N -0.501 5.501 17 Si 0.716 3.284 18 H -0.195 1.195 19 H -0.210 1.210 20 H -0.194 1.194 21 C -0.241 4.241 22 C -0.183 4.183 23 C -0.038 4.038 24 C 0.017 3.983 25 H 0.083 0.917 26 C -0.200 4.200 27 O -0.286 6.286 28 H 0.059 0.941 29 H 0.103 0.897 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.123 0.877 35 H 0.146 0.854 36 H 0.113 0.887 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.084 0.916 42 H 0.125 0.875 43 H 0.091 0.909 44 H 0.083 0.917 45 H 0.094 0.906 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.739 -6.685 -5.202 17.000 hybrid contribution 0.612 0.557 -0.048 0.829 sum -14.127 -6.127 -5.250 16.269 Atomic orbital electron populations 1.22741 0.81150 1.02729 0.99903 1.87945 1.19464 1.27313 1.95395 1.22495 0.91480 0.85438 1.01236 1.22335 0.92552 0.93971 0.88711 0.90934 1.21902 0.80981 0.96996 1.03632 1.58437 1.16126 1.69592 1.41021 1.04847 0.72524 0.77344 0.73335 1.93458 1.72687 1.87968 1.42040 1.93524 1.47144 1.66628 1.85324 1.29995 1.06339 1.21096 1.11534 1.18185 0.94820 0.88197 0.94032 1.20586 0.96088 1.35603 1.05872 0.91321 1.24896 0.98397 0.93061 0.94608 1.69955 1.26610 1.43200 1.10293 0.86599 0.81130 0.80321 0.80337 1.19546 1.20953 1.19408 1.23128 0.96005 1.08190 0.96827 1.22533 0.99017 0.99844 0.96882 1.22144 1.00701 0.92738 0.88198 1.22429 0.81370 0.95224 0.99233 0.91746 1.21725 1.01957 1.00720 0.95555 1.87940 1.22252 1.81173 1.37231 0.94079 0.89683 0.94093 0.92136 0.91332 0.90860 0.87720 0.85444 0.88666 0.92522 0.91279 0.89658 0.89598 0.91621 0.87469 0.90944 0.91674 0.90569 0.91610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.65 10.67 -39.87 -0.43 -5.07 16 3 C 0.07 0.77 5.60 37.16 0.21 0.98 16 4 C 0.08 1.12 3.06 -26.57 -0.08 1.04 16 5 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 6 C 0.09 1.25 5.96 -3.52 -0.02 1.22 16 7 N -1.02 -16.67 3.27 -113.05 -0.37 -17.04 16 8 S 2.62 55.38 4.65 -107.50 -0.50 54.88 16 9 O -0.97 -22.10 16.61 -57.54 -0.96 -23.05 16 10 O -0.94 -22.95 15.75 -57.54 -0.91 -23.86 16 11 C -0.56 -11.69 6.29 37.15 0.23 -11.46 16 12 C 0.05 1.21 1.64 -155.66 -0.26 0.95 16 13 C -0.54 -14.89 6.89 -34.44 -0.24 -15.13 16 14 H 0.07 1.93 7.82 -52.49 -0.41 1.52 16 15 C 0.10 2.68 5.39 -17.82 -0.10 2.58 16 16 N -0.87 -23.81 12.96 55.43 0.72 -23.09 16 17 Si 0.89 21.67 29.55 -169.99 -5.02 16.65 16 18 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 21 C -0.20 -4.40 9.88 -26.73 -0.26 -4.67 16 22 C -0.14 -3.26 9.50 -26.72 -0.25 -3.51 16 23 C 0.09 1.29 5.96 -3.54 -0.02 1.27 16 24 C 0.08 1.04 3.40 -26.58 -0.09 0.95 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 C -0.14 -1.51 9.57 37.16 0.36 -1.16 16 27 O -0.37 -5.22 9.99 -39.87 -0.40 -5.62 16 28 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.10 1.41 6.88 -51.92 -0.36 1.05 16 35 H 0.13 2.71 8.14 -51.93 -0.42 2.29 16 36 H 0.09 1.66 7.95 -51.92 -0.41 1.25 16 37 H 0.27 6.94 8.32 -40.82 -0.34 6.60 16 38 H 0.07 1.31 8.08 -51.93 -0.42 0.89 16 39 H 0.08 1.82 8.14 -51.92 -0.42 1.40 16 40 H 0.09 2.05 8.14 -51.93 -0.42 1.63 16 41 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.11 1.67 6.88 -51.93 -0.36 1.31 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 385.10 15.07 5.80 5.80 Total: -1.00 -33.31 385.10 -9.32 -42.63 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -7.86 Total: 3.32 kcal Atomic # 6 Polarization: -26.14 SS G_CDS: 0.59 Total: -25.55 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.35 Total: -40.13 kcal Atomic # 8 Polarization: -54.92 SS G_CDS: -2.69 Total: -57.60 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 55.38 SS G_CDS: -0.50 Total: 54.88 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.31 -9.32 -42.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451444182.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.873 kcal (2) G-P(sol) polarization free energy of solvation -33.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds