Wall clock time and date at job start Tue Mar 31 2020 18:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42900 * 114.00017 * 2 1 4 4 C 1.53005 * 109.47026 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.51071 * 304.99068 * 4 3 2 6 6 C 1.53302 * 109.51082 * 184.89358 * 4 3 2 7 7 N 1.47164 * 108.37461 * 187.81977 * 6 4 3 8 8 S 1.65593 * 120.94498 * 230.51671 * 7 6 4 9 9 O 1.42095 * 104.27878 * 26.00853 * 8 7 6 10 10 O 1.42105 * 104.28002 * 153.86450 * 8 7 6 11 11 C 1.81404 * 104.45058 * 269.93589 * 8 7 6 12 12 C 1.52995 * 109.47023 * 173.93136 * 11 8 7 13 13 C 1.50705 * 115.55162 * 39.92105 * 12 11 8 14 14 H 1.07999 * 119.99708 * 264.78250 * 13 12 11 15 15 C 1.37872 * 120.00291 * 84.78378 * 13 12 11 16 16 N 1.31522 * 119.99954 * 353.00136 * 15 13 12 17 17 Si 1.86791 * 120.00364 * 173.00461 * 15 13 12 18 18 H 1.48508 * 109.47161 * 89.99686 * 17 15 13 19 19 H 1.48498 * 109.47391 * 209.99780 * 17 15 13 20 20 H 1.48505 * 109.47182 * 329.99780 * 17 15 13 21 21 C 1.52999 * 117.49982 * 254.20892 * 12 11 8 22 22 C 1.53006 * 60.00286 * 252.50954 * 21 12 11 23 23 C 1.47157 * 118.07315 * 50.45453 * 7 6 4 24 24 C 1.53285 * 108.38559 * 309.49641 * 23 7 6 25 25 H 1.08997 * 109.55702 * 292.35396 * 24 23 7 26 26 C 1.53002 * 109.51448 * 172.22694 * 24 23 7 27 27 O 1.42956 * 109.51576 * 65.09677 * 4 3 2 28 28 H 1.09007 * 109.46940 * 60.00316 * 1 2 3 29 29 H 1.08999 * 109.47439 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47512 * 300.00855 * 1 2 3 31 31 H 1.09003 * 109.46966 * 299.99398 * 3 2 1 32 32 H 1.08996 * 109.47570 * 59.99485 * 3 2 1 33 33 H 1.08996 * 109.68135 * 307.49328 * 6 4 3 34 34 H 1.09009 * 109.67816 * 68.04825 * 6 4 3 35 35 H 1.08989 * 109.47435 * 293.93476 * 11 8 7 36 36 H 1.09000 * 109.46721 * 53.93604 * 11 8 7 37 37 H 0.96997 * 119.99848 * 185.03402 * 16 15 13 38 38 H 1.08994 * 117.49992 * 0.02562 * 21 12 11 39 39 H 1.09009 * 117.50055 * 145.02813 * 21 12 11 40 40 H 1.08993 * 117.50116 * 252.51048 * 22 21 12 41 41 H 1.08998 * 117.49360 * 107.48646 * 22 21 12 42 42 H 1.08998 * 109.68233 * 189.76963 * 23 7 6 43 43 H 1.09002 * 109.67735 * 69.22235 * 23 7 6 44 44 H 1.09000 * 109.46769 * 300.25407 * 26 24 23 45 45 H 1.08996 * 109.47257 * 60.24990 * 26 24 23 46 46 H 1.09004 * 109.47479 * 180.25835 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.8515 0.5687 0.8426 6 6 4.1595 2.5794 0.1239 7 7 5.6135 2.4556 -0.0669 8 16 6.6742 3.1223 1.0159 9 8 5.9464 3.1702 2.2354 10 8 7.8461 2.3280 0.8929 11 6 6.9714 4.7972 0.3858 12 6 7.8262 5.5750 1.3884 13 6 8.9374 4.7928 2.0398 14 1 8.7802 4.3320 3.0039 15 6 10.1547 4.6654 1.4052 16 7 10.3044 5.1064 0.1752 17 14 11.5914 3.8664 2.2922 18 1 11.5829 2.4044 2.0316 19 1 12.8645 4.4498 1.7981 20 1 11.4691 4.1097 3.7520 21 6 7.1294 6.6470 2.2289 22 6 8.0793 7.0565 1.1014 23 6 6.0970 1.7212 -1.2469 24 6 5.3786 0.3683 -1.3022 25 1 5.7019 -0.2510 -0.4655 26 6 5.7147 -0.3355 -2.6185 27 8 3.9672 0.5811 -1.2212 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6886 1.8463 -0.8901 32 1 1.6885 1.8465 0.8899 33 1 3.7442 3.2362 -0.6404 34 1 3.9517 2.9885 1.1127 35 1 7.4940 4.7389 -0.5688 36 1 6.0184 5.3078 0.2478 37 1 11.1373 4.9519 -0.2974 38 1 6.0620 6.7978 2.0678 39 1 7.4747 6.7866 3.2534 40 1 9.0493 7.4653 1.3841 41 1 7.6368 7.4769 0.1984 42 1 7.1723 1.5628 -1.1655 43 1 5.8767 2.2911 -2.1496 44 1 5.3926 0.2851 -3.4547 45 1 6.7908 -0.4974 -2.6795 46 1 5.1998 -1.2954 -2.6591 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451444182.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:12 Heat of formation + Delta-G solvation = -156.278892 kcal Electronic energy + Delta-G solvation = -28603.863435 eV Core-core repulsion = 24621.095619 eV Total energy + Delta-G solvation = -3982.767817 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.66893 -38.59269 -38.53560 -37.99312 -36.76309 -35.80251 -34.33969 -34.11443 -30.76840 -29.89193 -28.19844 -27.56852 -26.91804 -25.45529 -23.04428 -22.96990 -21.97532 -21.38752 -19.86821 -18.73101 -18.32439 -18.04411 -17.58457 -17.03115 -16.83349 -16.64077 -16.46977 -16.26118 -16.00388 -15.59574 -15.47972 -15.21285 -14.80127 -14.45667 -13.96987 -13.78135 -13.74270 -13.37747 -13.36809 -13.13107 -13.03270 -12.94838 -12.93514 -12.84032 -12.59140 -12.51670 -12.43138 -12.33442 -12.10861 -11.96224 -11.92326 -11.64251 -11.41998 -11.19780 -10.87662 -10.60960 -10.53284 -10.07341 -9.71308 -8.24666 -6.42286 -0.55665 1.34425 1.40243 1.45004 1.88681 2.38058 2.55956 2.75749 3.04493 3.06910 3.27619 3.45762 3.60311 3.75266 3.92227 4.01866 4.04064 4.11019 4.20603 4.29428 4.33218 4.40986 4.46522 4.49858 4.57733 4.59446 4.60208 4.62976 4.71138 4.81232 4.83805 4.89760 4.90243 4.96035 4.97609 5.10347 5.17663 5.29217 5.38005 5.50705 5.60238 5.66975 6.13469 6.18969 6.26278 6.66832 7.35576 8.82280 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.017580 B = 0.003820 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.321875 B = 7328.861591 C = 8083.915948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.414 6.414 3 C 0.073 3.927 4 C 0.079 3.921 5 H 0.050 0.950 6 C 0.085 3.915 7 N -1.012 6.012 8 S 2.628 3.372 9 O -0.995 6.995 10 O -0.982 6.982 11 C -0.550 4.550 12 C 0.013 3.987 13 C -0.559 4.559 14 H 0.047 0.953 15 C 0.060 3.940 16 N -0.882 5.882 17 Si 0.924 3.076 18 H -0.279 1.279 19 H -0.268 1.268 20 H -0.267 1.267 21 C -0.189 4.189 22 C -0.141 4.141 23 C 0.083 3.917 24 C 0.074 3.926 25 H 0.047 0.953 26 C -0.137 4.137 27 O -0.371 6.371 28 H 0.053 0.947 29 H 0.093 0.907 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.122 0.878 36 H 0.135 0.865 37 H 0.267 0.733 38 H 0.103 0.897 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.076 0.924 45 H 0.085 0.915 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.281 -5.421 -6.912 19.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.333 6.333 3 C -0.004 4.004 4 C 0.020 3.980 5 H 0.069 0.931 6 C -0.040 4.040 7 N -0.850 5.850 8 S 2.728 3.272 9 O -0.985 6.985 10 O -0.972 6.972 11 C -0.683 4.683 12 C 0.011 3.989 13 C -0.596 4.596 14 H 0.065 0.935 15 C -0.145 4.145 16 N -0.517 5.517 17 Si 0.749 3.251 18 H -0.205 1.205 19 H -0.193 1.193 20 H -0.191 1.191 21 C -0.226 4.226 22 C -0.180 4.180 23 C -0.042 4.042 24 C 0.015 3.985 25 H 0.065 0.935 26 C -0.194 4.194 27 O -0.290 6.290 28 H 0.071 0.929 29 H 0.111 0.889 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.141 0.859 36 H 0.153 0.847 37 H 0.076 0.924 38 H 0.121 0.879 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.106 0.894 42 H 0.110 0.890 43 H 0.116 0.884 44 H 0.095 0.905 45 H 0.104 0.896 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.797 -6.017 -6.428 18.964 hybrid contribution 1.161 0.317 0.354 1.255 sum -15.635 -5.700 -6.074 17.716 Atomic orbital electron populations 1.22935 0.79188 1.03775 1.01109 1.87893 1.21673 1.28101 1.95673 1.22537 0.89440 0.85460 1.02980 1.22431 0.94528 0.93292 0.87777 0.93144 1.22206 0.78995 0.97895 1.04940 1.58014 1.16923 1.69230 1.40810 1.04285 0.72056 0.77389 0.73466 1.93414 1.72911 1.88307 1.43916 1.93461 1.49675 1.67925 1.86129 1.29854 1.07648 1.20717 1.10073 1.18330 0.95613 0.88958 0.96049 1.20732 0.97662 1.35968 1.05275 0.93526 1.25411 1.00033 0.93748 0.95291 1.69979 1.27059 1.43950 1.10727 0.86066 0.79961 0.79179 0.79873 1.20475 1.19270 1.19108 1.23216 0.97642 1.05561 0.96176 1.22479 0.98648 0.98599 0.98281 1.22349 1.00051 0.93583 0.88258 1.22504 0.81212 0.94548 1.00249 0.93525 1.21727 1.02710 1.00809 0.94163 1.87946 1.22284 1.81245 1.37502 0.92876 0.88866 0.92808 0.90486 0.89366 0.87525 0.87621 0.85942 0.84673 0.92352 0.87875 0.90194 0.91749 0.89445 0.89005 0.88367 0.90474 0.89634 0.91052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.41 -9.36 10.67 -144.55 -1.54 -10.91 16 3 C 0.07 1.42 5.60 71.98 0.40 1.82 16 4 C 0.08 2.02 3.06 30.70 0.09 2.12 16 5 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 6 C 0.08 2.13 5.96 86.35 0.51 2.65 16 7 N -1.01 -32.13 3.27 -511.57 -1.67 -33.81 16 8 S 2.63 110.94 4.65 -56.49 -0.26 110.67 16 9 O -1.00 -45.36 16.61 -127.65 -2.12 -47.48 16 10 O -0.98 -49.60 15.75 -127.65 -2.01 -51.61 16 11 C -0.55 -22.25 6.29 71.98 0.45 -21.79 16 12 C 0.01 0.60 1.64 -52.93 -0.09 0.51 16 13 C -0.56 -31.03 6.89 25.60 0.18 -30.85 16 14 H 0.05 2.71 7.82 -2.91 -0.02 2.69 16 15 C 0.06 3.35 5.39 84.65 0.46 3.81 16 16 N -0.88 -48.73 12.96 21.45 0.28 -48.45 16 17 Si 0.92 44.78 29.55 68.60 2.03 46.81 16 18 H -0.28 -13.81 7.11 99.48 0.71 -13.11 16 19 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 20 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 21 C -0.19 -7.77 9.88 30.60 0.30 -7.47 16 22 C -0.14 -6.20 9.50 30.60 0.29 -5.91 16 23 C 0.08 2.35 5.96 86.35 0.51 2.87 16 24 C 0.07 1.96 3.40 30.69 0.10 2.07 16 25 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 26 C -0.14 -2.70 9.57 71.98 0.69 -2.01 16 27 O -0.37 -10.00 9.99 -144.55 -1.44 -11.45 16 28 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.08 1.23 8.14 -2.39 -0.02 1.22 16 32 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.11 2.64 6.88 -2.38 -0.02 2.63 16 35 H 0.12 5.08 8.14 -2.40 -0.02 5.06 16 36 H 0.14 4.25 7.95 -2.39 -0.02 4.23 16 37 H 0.27 14.05 8.32 -92.71 -0.77 13.27 16 38 H 0.10 3.51 8.08 -2.39 -0.02 3.49 16 39 H 0.08 3.33 8.14 -2.38 -0.02 3.31 16 40 H 0.06 3.07 8.14 -2.39 -0.02 3.05 16 41 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 42 H 0.09 2.90 6.88 -2.39 -0.02 2.88 16 43 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 44 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 Total: -1.00 -72.72 385.10 -0.65 -73.37 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: 0.94 Total: 23.44 kcal Atomic # 6 Polarization: -55.75 SS G_CDS: 5.16 Total: -50.59 kcal Atomic # 7 Polarization: -80.86 SS G_CDS: -1.40 Total: -82.26 kcal Atomic # 8 Polarization: -114.33 SS G_CDS: -7.12 Total: -121.45 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 16 Polarization: 110.94 SS G_CDS: -0.26 Total: 110.67 kcal Total: -72.72 -0.65 -73.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451444182.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.910 kcal (2) G-P(sol) polarization free energy of solvation -72.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds