Wall clock time and date at job start Tue Mar 31 2020 18:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99715 * 2 1 4 4 C 1.53003 * 109.47173 * 180.02562 * 3 2 1 5 5 H 1.08991 * 109.51220 * 54.89431 * 4 3 2 6 6 C 1.53290 * 109.51370 * 175.00065 * 4 3 2 7 7 N 1.47144 * 108.38599 * 172.22457 * 6 4 3 8 8 S 1.65597 * 120.98808 * 129.44189 * 7 6 4 9 9 O 1.42108 * 104.27490 * 26.08791 * 8 7 6 10 10 O 1.42100 * 104.28184 * 153.94954 * 8 7 6 11 11 C 1.81401 * 104.44763 * 270.02551 * 8 7 6 12 12 C 1.53004 * 109.47243 * 173.99143 * 11 8 7 13 13 C 1.50699 * 115.54885 * 65.19458 * 12 11 8 14 14 H 1.08006 * 120.00337 * 264.78334 * 13 12 11 15 15 C 1.37880 * 119.99854 * 84.79002 * 13 12 11 16 16 N 1.31513 * 120.00231 * 352.21655 * 15 13 12 17 17 Si 1.86800 * 119.99753 * 172.22215 * 15 13 12 18 18 H 1.48494 * 109.47258 * 59.99918 * 17 15 13 19 19 H 1.48502 * 109.47134 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47304 * 299.99303 * 17 15 13 21 21 C 1.52999 * 117.49873 * 279.52871 * 12 11 8 22 22 C 1.53003 * 117.50045 * 210.86849 * 12 11 8 23 23 C 1.47154 * 118.03681 * 309.46046 * 7 6 4 24 24 C 1.53299 * 108.38454 * 50.53237 * 23 7 6 25 25 H 1.09001 * 109.50494 * 67.67252 * 24 23 7 26 26 C 1.52996 * 109.51622 * 187.77527 * 24 23 7 27 27 O 1.42963 * 109.50673 * 294.74038 * 4 3 2 28 28 H 1.09003 * 109.46883 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47340 * 300.00237 * 1 2 3 30 30 H 1.08996 * 109.47380 * 60.00501 * 1 2 3 31 31 H 1.09001 * 109.47234 * 59.99737 * 3 2 1 32 32 H 1.09002 * 109.46952 * 299.99650 * 3 2 1 33 33 H 1.08996 * 109.68738 * 52.49634 * 6 4 3 34 34 H 1.09007 * 109.68145 * 291.94324 * 6 4 3 35 35 H 1.09001 * 109.46716 * 293.98367 * 11 8 7 36 36 H 1.08996 * 109.47811 * 53.98807 * 11 8 7 37 37 H 0.96991 * 120.00082 * 185.03027 * 16 15 13 38 38 H 1.09001 * 117.49457 * 359.97438 * 21 12 11 39 39 H 1.08991 * 117.50506 * 145.02014 * 21 12 11 40 40 H 1.08998 * 117.49604 * 214.98145 * 22 12 11 41 41 H 1.09003 * 117.49411 * 359.97438 * 22 12 11 42 42 H 1.09006 * 109.67938 * 290.81467 * 23 7 6 43 43 H 1.09000 * 109.68788 * 170.25636 * 23 7 6 44 44 H 1.09000 * 109.46807 * 60.00087 * 26 24 23 45 45 H 1.08996 * 109.46825 * 300.00397 * 26 24 23 46 46 H 1.08994 * 109.46980 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 1 3.8514 0.5672 -0.8413 6 6 4.1594 2.5793 -0.1266 7 7 5.6133 2.4560 0.0632 8 16 6.6740 3.1199 -1.0215 9 8 5.9508 4.1946 -1.6059 10 8 7.8508 3.3565 -0.2611 11 6 6.9568 1.8062 -2.2400 12 6 7.8116 2.3495 -3.3868 13 6 9.2159 2.7518 -3.0165 14 1 9.4373 3.7814 -2.7768 15 6 10.2182 1.8055 -2.9840 16 7 9.9244 0.5314 -3.1247 17 14 11.9933 2.3333 -2.7398 18 1 12.1253 3.0405 -1.4407 19 1 12.8708 1.1352 -2.7419 20 1 12.3952 3.2436 -3.8420 21 6 7.1043 3.1681 -4.4687 22 6 7.5917 1.7502 -4.7773 23 6 6.0971 1.7250 1.2451 24 6 5.3787 0.3721 1.3044 25 1 5.7028 -0.2490 0.4693 26 6 5.7150 -0.3279 2.6226 27 8 3.9673 0.5847 1.2230 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.7441 3.2376 0.6364 34 1 3.9516 2.9865 -1.1161 35 1 7.4749 0.9740 -1.7634 36 1 5.9998 1.4617 -2.6319 37 1 10.6181 -0.1397 -3.0291 38 1 6.0299 3.3191 -4.3637 39 1 7.6547 3.9972 -4.9130 40 1 8.4628 1.6472 -5.4243 41 1 6.8384 0.9685 -4.8749 42 1 5.8769 2.2973 2.1463 43 1 7.1725 1.5663 1.1640 44 1 5.3890 0.2930 3.4571 45 1 6.7916 -0.4855 2.6859 46 1 5.2042 -1.2899 2.6637 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451444183.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:15 Heat of formation + Delta-G solvation = -155.845129 kcal Electronic energy + Delta-G solvation = -28713.519379 eV Core-core repulsion = 24730.770371 eV Total energy + Delta-G solvation = -3982.749007 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.67804 -38.61257 -38.55396 -38.08953 -36.89444 -35.81961 -34.34660 -34.10531 -30.75393 -29.90846 -28.20964 -27.53897 -26.94588 -25.48359 -23.02363 -23.00928 -22.06685 -21.27298 -19.95211 -18.72473 -18.39223 -18.03849 -17.59895 -17.05177 -16.91562 -16.65555 -16.44345 -16.31279 -16.02159 -15.69056 -15.57274 -15.05552 -14.92532 -14.44263 -13.81847 -13.78990 -13.72140 -13.40333 -13.32629 -13.17446 -13.09495 -12.96168 -12.95276 -12.85826 -12.67682 -12.57582 -12.46119 -12.34778 -12.26925 -11.97800 -11.94593 -11.69984 -11.41847 -11.19902 -10.89800 -10.59827 -10.56781 -10.05021 -9.74117 -8.20870 -6.36158 -0.65438 1.38905 1.40390 1.47602 1.74227 2.38551 2.57794 2.75373 2.92215 3.05315 3.26303 3.36803 3.56189 3.73061 3.90291 3.98637 4.03194 4.12214 4.18444 4.23210 4.28355 4.38163 4.45289 4.48728 4.51596 4.56772 4.61047 4.63718 4.72038 4.79565 4.82535 4.90225 4.91421 4.95447 4.96412 5.10897 5.18330 5.29507 5.40900 5.47074 5.56768 5.69408 6.15728 6.20022 6.27418 6.69853 7.36420 8.85919 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.015443 B = 0.003988 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.651825 B = 7018.607406 C = 7568.084236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.412 6.412 3 C 0.071 3.929 4 C 0.076 3.924 5 H 0.066 0.934 6 C 0.091 3.909 7 N -1.007 6.007 8 S 2.620 3.380 9 O -0.984 6.984 10 O -0.985 6.985 11 C -0.550 4.550 12 C 0.010 3.990 13 C -0.537 4.537 14 H 0.049 0.951 15 C 0.044 3.956 16 N -0.891 5.891 17 Si 0.934 3.066 18 H -0.276 1.276 19 H -0.273 1.273 20 H -0.268 1.268 21 C -0.195 4.195 22 C -0.138 4.138 23 C 0.087 3.913 24 C 0.072 3.928 25 H 0.059 0.941 26 C -0.139 4.139 27 O -0.372 6.372 28 H 0.093 0.907 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.108 0.892 35 H 0.120 0.880 36 H 0.129 0.871 37 H 0.266 0.734 38 H 0.100 0.900 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.072 0.928 45 H 0.085 0.915 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.108 -2.570 8.111 19.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C -0.006 4.006 4 C 0.017 3.983 5 H 0.084 0.916 6 C -0.034 4.034 7 N -0.845 5.845 8 S 2.719 3.281 9 O -0.974 6.974 10 O -0.975 6.975 11 C -0.683 4.683 12 C 0.007 3.993 13 C -0.575 4.575 14 H 0.067 0.933 15 C -0.159 4.159 16 N -0.527 5.527 17 Si 0.759 3.241 18 H -0.201 1.201 19 H -0.198 1.198 20 H -0.193 1.193 21 C -0.232 4.232 22 C -0.177 4.177 23 C -0.038 4.038 24 C 0.013 3.987 25 H 0.077 0.923 26 C -0.197 4.197 27 O -0.291 6.291 28 H 0.111 0.889 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.126 0.874 35 H 0.138 0.862 36 H 0.147 0.853 37 H 0.075 0.925 38 H 0.119 0.881 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.091 0.909 45 H 0.104 0.896 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.677 -2.060 8.278 18.732 hybrid contribution 1.203 -0.220 -0.434 1.298 sum -15.474 -2.280 7.844 17.498 Atomic orbital electron populations 1.22927 0.79298 1.03740 1.01038 1.87897 1.21546 1.28019 1.95657 1.22544 0.89793 0.85444 1.02864 1.22529 0.94329 0.93176 0.88278 0.91589 1.22139 0.78787 0.97510 1.05001 1.57952 1.16924 1.72352 1.37285 1.04655 0.72372 0.76404 0.74696 1.93454 1.72697 1.51874 1.79391 1.93480 1.49529 1.84884 1.69631 1.29920 1.07410 1.16896 1.14036 1.18411 0.93141 1.00980 0.86728 1.20671 0.92504 0.94716 1.49576 0.93328 1.25516 1.02060 0.94951 0.93379 1.70011 1.34703 1.00200 1.47789 0.85973 0.80719 0.78366 0.79005 1.20132 1.19814 1.19294 1.23253 0.99719 0.94872 1.05330 1.22509 1.00912 0.94519 0.99773 1.22313 0.99731 0.93490 0.88289 1.22572 0.81238 0.94334 1.00566 0.92294 1.21734 1.02753 1.00844 0.94322 1.87964 1.22283 1.81372 1.37529 0.88896 0.93099 0.92735 0.91096 0.89162 0.88675 0.87372 0.86155 0.85308 0.92476 0.88146 0.89842 0.91509 0.89453 0.89143 0.89035 0.90856 0.89601 0.91008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.41 -8.88 10.67 -144.70 -1.54 -10.42 16 3 C 0.07 1.29 5.60 71.98 0.40 1.69 16 4 C 0.08 1.76 3.06 30.69 0.09 1.86 16 5 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 6 C 0.09 2.20 5.79 86.35 0.50 2.70 16 7 N -1.01 -30.87 3.27 -511.62 -1.67 -32.54 16 8 S 2.62 105.53 5.15 -56.49 -0.29 105.24 16 9 O -0.98 -41.59 16.81 -127.65 -2.15 -43.74 16 10 O -0.99 -47.49 16.47 -127.65 -2.10 -49.59 16 11 C -0.55 -22.65 6.03 71.98 0.43 -22.22 16 12 C 0.01 0.46 1.32 -52.93 -0.07 0.39 16 13 C -0.54 -29.67 8.17 25.60 0.21 -29.46 16 14 H 0.05 2.78 7.83 -2.91 -0.02 2.76 16 15 C 0.04 2.41 5.38 84.66 0.46 2.86 16 16 N -0.89 -48.80 12.98 21.45 0.28 -48.52 16 17 Si 0.93 43.68 29.55 68.60 2.03 45.71 16 18 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 19 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 21 C -0.19 -8.23 9.96 30.62 0.30 -7.92 16 22 C -0.14 -6.13 9.49 30.62 0.29 -5.84 16 23 C 0.09 2.41 5.79 86.35 0.50 2.91 16 24 C 0.07 1.78 3.40 30.69 0.10 1.88 16 25 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 26 C -0.14 -2.67 9.57 71.98 0.69 -1.98 16 27 O -0.37 -9.53 10.00 -144.70 -1.45 -10.97 16 28 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.11 2.43 7.23 -2.38 -0.02 2.41 16 35 H 0.12 5.28 8.14 -2.39 -0.02 5.26 16 36 H 0.13 4.32 8.09 -2.39 -0.02 4.30 16 37 H 0.27 13.87 8.32 -92.71 -0.77 13.10 16 38 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 39 H 0.08 3.54 8.14 -2.39 -0.02 3.52 16 40 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 41 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 42 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 43 H 0.09 2.74 7.23 -2.39 -0.02 2.72 16 44 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -70.71 387.90 -0.79 -71.50 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: 0.94 Total: 24.84 kcal Atomic # 6 Polarization: -56.68 SS G_CDS: 5.16 Total: -51.51 kcal Atomic # 7 Polarization: -79.66 SS G_CDS: -1.40 Total: -81.06 kcal Atomic # 8 Polarization: -107.49 SS G_CDS: -7.24 Total: -114.72 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: 105.53 SS G_CDS: -0.29 Total: 105.24 kcal Total: -70.71 -0.79 -71.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451444183.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.341 kcal (2) G-P(sol) polarization free energy of solvation -70.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds