Wall clock time and date at job start Tue Mar 31 2020 17:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34227 * 117.00051 * 2 1 4 4 O 1.20829 * 119.99758 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00251 * 179.97438 * 3 2 1 6 6 H 1.08998 * 110.78386 * 303.24613 * 5 3 2 7 7 C 1.55157 * 110.71788 * 66.48051 * 5 3 2 8 8 C 1.54904 * 101.58269 * 153.86665 * 7 5 3 9 9 N 1.47423 * 104.83445 * 322.99052 * 8 7 5 10 10 S 1.65600 * 125.65193 * 204.17711 * 9 8 7 11 11 O 1.42097 * 104.27564 * 26.01528 * 10 9 8 12 12 O 1.42100 * 104.27752 * 153.87342 * 10 9 8 13 13 C 1.81400 * 104.44878 * 269.94500 * 10 9 8 14 14 C 1.52995 * 109.47342 * 180.02562 * 13 10 9 15 15 C 1.53004 * 109.46792 * 299.99630 * 14 13 10 16 16 C 1.52997 * 109.47506 * 59.99497 * 14 13 10 17 17 C 1.50702 * 109.47323 * 180.02562 * 14 13 10 18 18 H 1.07997 * 119.99829 * 359.97438 * 17 14 13 19 19 C 1.37878 * 119.99908 * 179.97438 * 17 14 13 20 20 N 1.31514 * 120.00346 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99896 * 179.97438 * 19 17 14 22 22 H 1.48497 * 109.47343 * 59.99781 * 21 19 17 23 23 H 1.48494 * 109.47183 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.46920 * 300.00272 * 21 19 17 25 25 C 1.47022 * 108.69988 * 24.12614 * 9 8 7 26 26 H 1.09004 * 110.01470 * 239.44903 * 25 9 8 27 27 C 1.53006 * 109.88118 * 118.36185 * 25 9 8 28 28 H 1.09005 * 109.46798 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47157 * 299.99770 * 1 2 3 30 30 H 1.09002 * 109.47239 * 59.99928 * 1 2 3 31 31 H 1.09001 * 111.00454 * 271.94452 * 7 5 3 32 32 H 1.08998 * 111.00368 * 35.75194 * 7 5 3 33 33 H 1.08995 * 110.37187 * 81.83053 * 8 7 5 34 34 H 1.09001 * 110.37070 * 204.04205 * 8 7 5 35 35 H 1.09004 * 109.47133 * 300.00046 * 13 10 9 36 36 H 1.08997 * 109.47333 * 59.99647 * 13 10 9 37 37 H 1.09000 * 109.46911 * 59.99723 * 15 14 13 38 38 H 1.09000 * 109.47528 * 179.97438 * 15 14 13 39 39 H 1.08998 * 109.47267 * 300.00496 * 15 14 13 40 40 H 1.08997 * 109.46859 * 60.00077 * 16 14 13 41 41 H 1.09002 * 109.47358 * 180.02562 * 16 14 13 42 42 H 1.08998 * 109.47022 * 300.00189 * 16 14 13 43 43 H 0.96993 * 120.00001 * 179.97438 * 20 19 17 44 44 H 1.09001 * 109.47002 * 302.18921 * 27 25 9 45 45 H 1.08993 * 109.46955 * 62.19358 * 27 25 9 46 46 H 1.09000 * 109.47050 * 182.19187 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9815 0.7374 0.8531 7 6 4.1453 0.7250 -1.3297 8 6 5.4917 1.4857 -1.4209 9 7 5.2020 2.8305 -0.8910 10 16 6.0488 4.2095 -1.2427 11 8 6.6146 3.9568 -2.5215 12 8 5.1075 5.2569 -1.0521 13 6 7.3451 4.2803 0.0242 14 6 8.2052 5.5264 -0.1951 15 6 8.8498 5.4635 -1.5813 16 6 7.3275 6.7757 -0.0970 17 6 9.2825 5.5848 0.8571 18 1 9.3469 4.8107 1.6074 19 6 10.1858 6.6264 0.8617 20 7 10.1077 7.5688 -0.0523 21 14 11.5207 6.6992 2.1663 22 1 12.3722 5.4863 2.0715 23 1 12.3556 7.9086 1.9534 24 1 10.8951 6.7607 3.5118 25 6 4.0361 2.7449 0.0005 26 1 3.2374 3.3893 -0.3669 27 6 4.4325 3.1646 1.4174 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 4.3078 -0.3511 -1.2699 32 1 3.4975 0.9740 -2.1702 33 1 6.2482 0.9924 -0.8107 34 1 5.8229 1.5478 -2.4575 35 1 6.8858 4.3254 1.0118 36 1 7.9701 3.3900 -0.0454 37 1 8.0709 5.4210 -2.3426 38 1 9.4623 6.3515 -1.7379 39 1 9.4751 4.5735 -1.6512 40 1 6.8683 6.8205 0.8905 41 1 7.9402 7.6635 -0.2538 42 1 6.5486 6.7332 -0.8584 43 1 10.7429 8.3017 -0.0488 44 1 5.2434 2.5279 1.7714 45 1 4.7629 4.2032 1.4096 46 1 3.5737 3.0615 2.0806 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451445493.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:06 Heat of formation + Delta-G solvation = -155.185898 kcal Electronic energy + Delta-G solvation = -28654.887629 eV Core-core repulsion = 24672.167208 eV Total energy + Delta-G solvation = -3982.720421 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.00544 -38.69318 -36.66188 -36.57859 -36.27900 -35.29603 -31.73526 -31.71376 -31.42470 -28.19608 -26.68048 -26.20008 -25.71825 -25.22630 -22.89779 -22.16642 -20.45345 -19.35328 -18.71946 -17.87913 -17.31683 -16.95404 -16.46096 -16.01527 -15.90937 -15.36973 -14.89236 -14.75827 -14.15094 -14.02482 -13.61531 -13.55372 -13.30997 -13.11019 -12.91854 -12.70287 -12.51032 -12.37840 -12.11205 -12.04173 -11.85773 -11.53775 -11.46179 -11.18298 -11.12635 -11.08564 -11.05870 -10.98362 -10.92969 -10.68382 -10.60348 -10.40186 -10.27200 -10.09757 -9.65193 -9.58209 -8.95351 -8.63315 -8.40361 -6.03613 -4.15882 0.77880 1.90296 2.33904 3.09588 3.26549 3.32252 3.33576 4.02499 4.14282 4.31357 4.37889 4.50139 4.72535 4.77955 4.81395 4.86909 4.98500 5.03802 5.20346 5.21354 5.27205 5.34932 5.44200 5.53550 5.61230 5.66992 5.71441 5.81378 5.91714 6.06157 6.14881 6.22305 6.38632 6.48944 6.70125 6.79266 6.90337 7.03979 7.31149 7.44412 7.49998 7.67304 7.97630 8.09049 8.32442 8.82380 9.49491 10.97721 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.024357 B = 0.003184 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.301933 B = 8790.753096 C = 9075.961179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.471 3.529 4 O -0.497 6.497 5 C -0.092 4.092 6 H 0.126 0.874 7 C -0.115 4.115 8 C 0.114 3.886 9 N -1.018 6.018 10 S 2.605 3.395 11 O -0.959 6.959 12 O -0.955 6.955 13 C -0.582 4.582 14 C 0.083 3.917 15 C -0.164 4.164 16 C -0.164 4.164 17 C -0.503 4.503 18 H 0.058 0.942 19 C 0.065 3.935 20 N -0.884 5.884 21 Si 0.896 3.104 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.277 1.277 25 C 0.159 3.841 26 H 0.101 0.899 27 C -0.181 4.181 28 H 0.101 0.899 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.027 0.973 38 H 0.095 0.905 39 H 0.036 0.964 40 H 0.036 0.964 41 H 0.095 0.905 42 H 0.027 0.973 43 H 0.263 0.737 44 H 0.069 0.931 45 H 0.072 0.928 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.190 -16.941 0.707 22.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.313 3.687 4 O -0.384 6.384 5 C -0.112 4.112 6 H 0.144 0.856 7 C -0.154 4.154 8 C -0.011 4.011 9 N -0.854 5.854 10 S 2.706 3.294 11 O -0.950 6.950 12 O -0.946 6.946 13 C -0.715 4.715 14 C 0.080 3.920 15 C -0.222 4.222 16 C -0.222 4.222 17 C -0.542 4.542 18 H 0.077 0.923 19 C -0.137 4.137 20 N -0.522 5.522 21 Si 0.724 3.276 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.203 1.203 25 C 0.053 3.947 26 H 0.118 0.882 27 C -0.239 4.239 28 H 0.120 0.880 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.115 0.885 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.045 0.955 38 H 0.114 0.886 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.114 0.886 42 H 0.046 0.954 43 H 0.073 0.927 44 H 0.088 0.912 45 H 0.091 0.909 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.515 -15.813 -0.127 21.466 hybrid contribution 0.819 -0.224 1.409 1.645 sum -13.696 -16.037 1.282 21.129 Atomic orbital electron populations 1.23293 0.76197 1.03719 1.02735 1.86501 1.23495 1.33230 1.84138 1.23420 0.91575 0.81439 0.72289 1.90708 1.66878 1.36226 1.44555 1.22171 0.87548 0.99028 1.02471 0.85644 1.22774 0.96686 1.00851 0.95054 1.22017 0.96550 0.81954 1.00607 1.59093 1.42820 1.23299 1.60143 1.05443 0.75583 0.71582 0.76833 1.93530 1.79483 1.84013 1.37963 1.93546 1.60727 1.53074 1.87253 1.30645 1.15237 1.09921 1.15719 1.17928 0.92243 0.86171 0.95622 1.22283 1.00955 1.03608 0.95334 1.22279 0.98052 1.02879 0.98969 1.20898 1.12187 1.08811 1.12302 0.92338 1.24938 0.97500 0.95427 0.95848 1.69789 1.36710 1.11976 1.33686 0.86593 0.81624 0.77470 0.81909 1.20273 1.21178 1.20272 1.21135 0.88782 0.94088 0.90729 0.88152 1.22437 1.02752 1.03202 0.95550 0.88027 0.91783 0.91796 0.88524 0.90070 0.90958 0.89114 0.86252 0.86377 0.95462 0.88597 0.94439 0.94440 0.88620 0.95399 0.92660 0.91246 0.90889 0.90805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 101.05 1.07 1.29 16 2 O -0.36 -3.24 10.57 -39.25 -0.41 -3.65 16 3 C 0.47 5.16 7.26 36.00 0.26 5.42 16 4 O -0.50 -7.00 15.17 -18.75 -0.28 -7.28 16 5 C -0.09 -0.89 2.98 -89.94 -0.27 -1.16 16 6 H 0.13 0.89 7.85 -51.93 -0.41 0.49 16 7 C -0.11 -0.98 6.52 -24.59 -0.16 -1.14 16 8 C 0.11 1.25 7.07 -2.53 -0.02 1.23 16 9 N -1.02 -14.77 3.32 -104.42 -0.35 -15.12 16 10 S 2.61 49.98 4.29 -107.50 -0.46 49.51 16 11 O -0.96 -20.41 14.90 -57.54 -0.86 -21.26 16 12 O -0.96 -20.81 15.14 -57.54 -0.87 -21.69 16 13 C -0.58 -11.38 5.12 37.16 0.19 -11.19 16 14 C 0.08 2.01 0.52 -155.66 -0.08 1.93 16 15 C -0.16 -4.06 7.77 37.16 0.29 -3.77 16 16 C -0.16 -4.08 7.78 37.16 0.29 -3.79 16 17 C -0.50 -13.15 8.01 -34.44 -0.28 -13.43 16 18 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 19 C 0.06 1.72 5.15 -17.82 -0.09 1.63 16 20 N -0.88 -24.14 9.35 55.43 0.52 -23.62 16 21 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 25 C 0.16 2.09 2.78 -66.95 -0.19 1.90 16 26 H 0.10 1.55 6.80 -51.93 -0.35 1.20 16 27 C -0.18 -2.19 8.72 37.16 0.32 -1.87 16 28 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 30 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 31 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.73 8.04 -51.93 -0.42 0.31 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 1.03 7.67 -51.93 -0.40 0.63 16 35 H 0.12 2.12 6.91 -51.92 -0.36 1.76 16 36 H 0.12 2.07 8.14 -51.93 -0.42 1.65 16 37 H 0.03 0.64 5.46 -51.93 -0.28 0.36 16 38 H 0.10 2.55 6.07 -51.93 -0.32 2.24 16 39 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.10 2.55 6.07 -51.93 -0.32 2.24 16 42 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 43 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.07 1.02 7.16 -51.93 -0.37 0.65 16 46 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 368.79 15.07 5.56 5.56 Total: -1.00 -33.42 368.79 -8.11 -41.54 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -7.27 Total: 3.41 kcal Atomic # 6 Polarization: -24.29 SS G_CDS: 1.34 Total: -22.95 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.17 Total: -38.74 kcal Atomic # 8 Polarization: -51.46 SS G_CDS: -2.43 Total: -53.89 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 49.98 SS G_CDS: -0.46 Total: 49.51 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.42 -8.11 -41.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451445493.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.648 kcal (2) G-P(sol) polarization free energy of solvation -33.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds