Wall clock time and date at job start Tue Mar 31 2020 17:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34227 * 117.00051 * 2 1 4 4 O 1.20829 * 119.99758 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00251 * 179.97438 * 3 2 1 6 6 H 1.08998 * 110.78386 * 303.24613 * 5 3 2 7 7 C 1.55157 * 110.71788 * 66.48051 * 5 3 2 8 8 C 1.54904 * 101.58269 * 153.86665 * 7 5 3 9 9 N 1.47423 * 104.83445 * 322.99052 * 8 7 5 10 10 S 1.65600 * 125.65193 * 204.17711 * 9 8 7 11 11 O 1.42097 * 104.27564 * 26.01528 * 10 9 8 12 12 O 1.42100 * 104.27752 * 153.87342 * 10 9 8 13 13 C 1.81400 * 104.44878 * 269.94500 * 10 9 8 14 14 C 1.52995 * 109.47342 * 180.02562 * 13 10 9 15 15 C 1.53004 * 109.46792 * 299.99630 * 14 13 10 16 16 C 1.52997 * 109.47506 * 59.99497 * 14 13 10 17 17 C 1.50702 * 109.47323 * 180.02562 * 14 13 10 18 18 H 1.07997 * 119.99829 * 359.97438 * 17 14 13 19 19 C 1.37878 * 119.99908 * 179.97438 * 17 14 13 20 20 N 1.31514 * 120.00346 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99896 * 179.97438 * 19 17 14 22 22 H 1.48497 * 109.47343 * 59.99781 * 21 19 17 23 23 H 1.48494 * 109.47183 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.46920 * 300.00272 * 21 19 17 25 25 C 1.47022 * 108.69988 * 24.12614 * 9 8 7 26 26 H 1.09004 * 110.01470 * 239.44903 * 25 9 8 27 27 C 1.53006 * 109.88118 * 118.36185 * 25 9 8 28 28 H 1.09005 * 109.46798 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47157 * 299.99770 * 1 2 3 30 30 H 1.09002 * 109.47239 * 59.99928 * 1 2 3 31 31 H 1.09001 * 111.00454 * 271.94452 * 7 5 3 32 32 H 1.08998 * 111.00368 * 35.75194 * 7 5 3 33 33 H 1.08995 * 110.37187 * 81.83053 * 8 7 5 34 34 H 1.09001 * 110.37070 * 204.04205 * 8 7 5 35 35 H 1.09004 * 109.47133 * 300.00046 * 13 10 9 36 36 H 1.08997 * 109.47333 * 59.99647 * 13 10 9 37 37 H 1.09000 * 109.46911 * 59.99723 * 15 14 13 38 38 H 1.09000 * 109.47528 * 179.97438 * 15 14 13 39 39 H 1.08998 * 109.47267 * 300.00496 * 15 14 13 40 40 H 1.08997 * 109.46859 * 60.00077 * 16 14 13 41 41 H 1.09002 * 109.47358 * 180.02562 * 16 14 13 42 42 H 1.08998 * 109.47022 * 300.00189 * 16 14 13 43 43 H 0.96993 * 120.00001 * 179.97438 * 20 19 17 44 44 H 1.09001 * 109.47002 * 302.18921 * 27 25 9 45 45 H 1.08993 * 109.46955 * 62.19358 * 27 25 9 46 46 H 1.09000 * 109.47050 * 182.19187 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9815 0.7374 0.8531 7 6 4.1453 0.7250 -1.3297 8 6 5.4917 1.4857 -1.4209 9 7 5.2020 2.8305 -0.8910 10 16 6.0488 4.2095 -1.2427 11 8 6.6146 3.9568 -2.5215 12 8 5.1075 5.2569 -1.0521 13 6 7.3451 4.2803 0.0242 14 6 8.2052 5.5264 -0.1951 15 6 8.8498 5.4635 -1.5813 16 6 7.3275 6.7757 -0.0970 17 6 9.2825 5.5848 0.8571 18 1 9.3469 4.8107 1.6074 19 6 10.1858 6.6264 0.8617 20 7 10.1077 7.5688 -0.0523 21 14 11.5207 6.6992 2.1663 22 1 12.3722 5.4863 2.0715 23 1 12.3556 7.9086 1.9534 24 1 10.8951 6.7607 3.5118 25 6 4.0361 2.7449 0.0005 26 1 3.2374 3.3893 -0.3669 27 6 4.4325 3.1646 1.4174 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 4.3078 -0.3511 -1.2699 32 1 3.4975 0.9740 -2.1702 33 1 6.2482 0.9924 -0.8107 34 1 5.8229 1.5478 -2.4575 35 1 6.8858 4.3254 1.0118 36 1 7.9701 3.3900 -0.0454 37 1 8.0709 5.4210 -2.3426 38 1 9.4623 6.3515 -1.7379 39 1 9.4751 4.5735 -1.6512 40 1 6.8683 6.8205 0.8905 41 1 7.9402 7.6635 -0.2538 42 1 6.5486 6.7332 -0.8584 43 1 10.7429 8.3017 -0.0488 44 1 5.2434 2.5279 1.7714 45 1 4.7629 4.2032 1.4096 46 1 3.5737 3.0615 2.0806 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451445493.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:05 Heat of formation + Delta-G solvation = -177.327211 kcal Electronic energy + Delta-G solvation = -28655.847749 eV Core-core repulsion = 24672.167208 eV Total energy + Delta-G solvation = -3983.680540 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.82831 -39.57793 -38.19803 -38.14216 -37.47578 -36.92848 -33.64576 -32.65044 -32.38277 -28.86118 -28.34969 -27.71693 -27.26398 -27.00664 -23.77560 -23.08804 -21.43220 -21.10781 -19.86103 -19.09389 -18.39041 -17.96069 -17.74282 -17.28155 -17.17515 -16.90145 -16.66072 -16.01722 -15.23530 -14.98216 -14.74133 -14.67916 -14.59068 -14.42895 -14.39437 -13.97178 -13.89644 -13.60456 -13.25078 -13.12357 -13.02829 -12.87143 -12.86303 -12.79214 -12.75351 -12.55717 -12.45614 -12.20291 -12.15539 -12.02522 -11.93399 -11.83317 -11.75923 -11.56852 -11.46869 -11.37033 -10.66036 -10.41208 -9.95737 -8.02578 -6.21678 -0.71250 1.09246 1.46479 1.46785 1.54015 1.54707 1.87222 2.44904 2.87540 3.06098 3.18643 3.20400 3.54425 3.76802 3.95575 4.05822 4.14118 4.21263 4.24144 4.33219 4.35020 4.36780 4.52417 4.57627 4.68429 4.71365 4.75018 4.83543 4.84430 4.90922 4.95646 4.99829 5.05363 5.08959 5.21798 5.24132 5.32156 5.37379 5.44348 5.52271 5.64377 5.94979 6.10116 6.33125 6.66461 6.83102 7.46785 8.97365 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.024357 B = 0.003184 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.301933 B = 8790.753096 C = 9075.961179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.351 6.351 3 C 0.474 3.526 4 O -0.538 6.538 5 C -0.083 4.083 6 H 0.164 0.836 7 C -0.105 4.105 8 C 0.100 3.900 9 N -1.015 6.015 10 S 2.619 3.381 11 O -0.986 6.986 12 O -0.991 6.991 13 C -0.580 4.580 14 C 0.071 3.929 15 C -0.160 4.160 16 C -0.160 4.160 17 C -0.517 4.517 18 H 0.067 0.933 19 C 0.017 3.983 20 N -0.910 5.910 21 Si 0.956 3.044 22 H -0.269 1.269 23 H -0.289 1.289 24 H -0.272 1.272 25 C 0.151 3.849 26 H 0.067 0.933 27 C -0.184 4.184 28 H 0.135 0.865 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.138 0.862 32 H 0.070 0.930 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.137 0.863 36 H 0.142 0.858 37 H 0.028 0.972 38 H 0.071 0.929 39 H 0.043 0.957 40 H 0.039 0.961 41 H 0.071 0.929 42 H 0.028 0.972 43 H 0.261 0.739 44 H 0.095 0.905 45 H 0.046 0.954 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.212 -20.396 2.171 24.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.267 6.267 3 C 0.317 3.683 4 O -0.427 6.427 5 C -0.103 4.103 6 H 0.181 0.819 7 C -0.144 4.144 8 C -0.024 4.024 9 N -0.854 5.854 10 S 2.720 3.280 11 O -0.976 6.976 12 O -0.982 6.982 13 C -0.714 4.714 14 C 0.069 3.931 15 C -0.218 4.218 16 C -0.218 4.218 17 C -0.556 4.556 18 H 0.085 0.915 19 C -0.183 4.183 20 N -0.548 5.548 21 Si 0.782 3.218 22 H -0.195 1.195 23 H -0.215 1.215 24 H -0.197 1.197 25 C 0.045 3.955 26 H 0.085 0.915 27 C -0.242 4.242 28 H 0.153 0.847 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.156 0.844 32 H 0.089 0.911 33 H 0.123 0.877 34 H 0.101 0.899 35 H 0.155 0.845 36 H 0.160 0.840 37 H 0.047 0.953 38 H 0.090 0.910 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.090 0.910 42 H 0.047 0.953 43 H 0.071 0.929 44 H 0.114 0.886 45 H 0.066 0.934 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.533 -19.289 1.333 24.188 hybrid contribution 0.716 0.794 0.920 1.410 sum -13.817 -18.496 2.252 23.196 Atomic orbital electron populations 1.23574 0.74837 1.05840 1.02399 1.86491 1.24795 1.31933 1.83502 1.23668 0.92071 0.81356 0.71171 1.90706 1.67819 1.37648 1.46573 1.22195 0.86816 0.96699 1.04627 0.81905 1.22825 0.94784 1.02815 0.93941 1.22453 0.98887 0.80268 1.00801 1.58649 1.42467 1.23580 1.60663 1.04609 0.75243 0.71974 0.76199 1.93486 1.80121 1.84656 1.39359 1.93495 1.61542 1.55572 1.87545 1.30549 1.15296 1.08586 1.16927 1.17912 0.92592 0.87815 0.94810 1.22217 1.00796 1.02686 0.96132 1.22216 0.97824 1.02694 0.99093 1.21264 1.12613 1.08941 1.12789 0.91530 1.25704 0.99622 0.95273 0.97654 1.69941 1.37356 1.12408 1.35116 0.85647 0.79134 0.77407 0.79644 1.19456 1.21488 1.19682 1.21214 0.87318 0.96303 0.90683 0.91456 1.22481 1.04272 1.02154 0.95280 0.84655 0.91997 0.92389 0.84369 0.91072 0.87658 0.89923 0.84499 0.83974 0.95290 0.91010 0.93737 0.94172 0.90988 0.95338 0.92923 0.88633 0.93443 0.89391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.49 16 2 O -0.35 -5.39 10.57 -51.39 -0.54 -5.93 16 3 C 0.47 9.46 7.26 71.23 0.52 9.97 16 4 O -0.54 -15.03 15.17 21.96 0.33 -14.69 16 5 C -0.08 -1.35 2.98 -10.35 -0.03 -1.38 16 6 H 0.16 1.46 7.85 -2.39 -0.02 1.44 16 7 C -0.10 -1.42 6.52 31.98 0.21 -1.21 16 8 C 0.10 1.88 7.07 86.85 0.61 2.49 16 9 N -1.01 -27.97 3.32 -484.28 -1.61 -29.58 16 10 S 2.62 100.10 4.29 -56.49 -0.24 99.86 16 11 O -0.99 -42.03 14.90 -127.65 -1.90 -43.93 16 12 O -0.99 -44.40 15.14 -127.65 -1.93 -46.33 16 13 C -0.58 -21.99 5.12 71.98 0.37 -21.62 16 14 C 0.07 3.44 0.52 -52.93 -0.03 3.41 16 15 C -0.16 -8.04 7.77 71.98 0.56 -7.48 16 16 C -0.16 -8.17 7.78 71.98 0.56 -7.61 16 17 C -0.52 -26.70 8.01 25.60 0.21 -26.50 16 18 H 0.07 3.25 7.74 -2.91 -0.02 3.23 16 19 C 0.02 0.89 5.15 84.65 0.44 1.32 16 20 N -0.91 -50.63 9.35 21.45 0.20 -50.43 16 21 Si 0.96 41.81 29.54 68.60 2.03 43.83 16 22 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 23 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 25 C 0.15 3.77 2.78 45.34 0.13 3.89 16 26 H 0.07 2.13 6.80 -2.38 -0.02 2.12 16 27 C -0.18 -4.12 8.72 71.98 0.63 -3.50 16 28 H 0.14 0.56 8.14 -2.38 -0.02 0.54 16 29 H 0.06 0.73 8.13 -2.39 -0.02 0.71 16 30 H 0.06 0.72 8.13 -2.39 -0.02 0.70 16 31 H 0.14 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.07 1.12 8.04 -2.39 -0.02 1.10 16 33 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.08 1.71 7.67 -2.39 -0.02 1.69 16 35 H 0.14 4.65 6.91 -2.39 -0.02 4.64 16 36 H 0.14 4.63 8.14 -2.39 -0.02 4.61 16 37 H 0.03 1.40 5.46 -2.39 -0.01 1.38 16 38 H 0.07 3.92 6.07 -2.39 -0.01 3.91 16 39 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.07 3.98 6.07 -2.39 -0.01 3.97 16 42 H 0.03 1.40 5.46 -2.39 -0.01 1.39 16 43 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 44 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.05 1.30 7.16 -2.39 -0.02 1.28 16 46 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -74.82 368.79 2.66 -72.16 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: 0.97 Total: 21.76 kcal Atomic # 6 Polarization: -52.08 SS G_CDS: 5.36 Total: -46.72 kcal Atomic # 7 Polarization: -78.60 SS G_CDS: -1.41 Total: -80.01 kcal Atomic # 8 Polarization: -106.84 SS G_CDS: -4.04 Total: -110.89 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.83 kcal Atomic # 16 Polarization: 100.10 SS G_CDS: -0.24 Total: 99.86 kcal Total: -74.82 2.66 -72.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451445493.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.169 kcal (2) G-P(sol) polarization free energy of solvation -74.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds