Wall clock time and date at job start Tue Mar 31 2020 17:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 116.99985 * 2 1 4 4 O 1.20826 * 120.00319 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00394 * 179.97438 * 3 2 1 6 6 H 1.09005 * 110.63442 * 59.29910 * 5 3 2 7 7 C 1.55153 * 110.72318 * 296.16284 * 5 3 2 8 8 C 1.55116 * 101.48418 * 206.26217 * 7 5 3 9 9 N 1.47420 * 104.94587 * 36.77757 * 8 7 5 10 10 S 1.65602 * 125.65198 * 156.03121 * 9 8 7 11 11 O 1.42103 * 104.27267 * 26.02988 * 10 9 8 12 12 O 1.42098 * 104.27827 * 153.88221 * 10 9 8 13 13 C 1.81399 * 104.44855 * 269.95820 * 10 9 8 14 14 C 1.53000 * 109.46880 * 179.97438 * 13 10 9 15 15 C 1.53008 * 109.47121 * 299.99814 * 14 13 10 16 16 C 1.52998 * 109.47216 * 59.99899 * 14 13 10 17 17 C 1.50695 * 109.47151 * 180.02562 * 14 13 10 18 18 H 1.08000 * 120.00278 * 359.97438 * 17 14 13 19 19 C 1.37877 * 120.00375 * 180.02562 * 17 14 13 20 20 N 1.31519 * 119.99848 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 120.00259 * 179.97438 * 19 17 14 22 22 H 1.48503 * 109.46924 * 60.00260 * 21 19 17 23 23 H 1.48507 * 109.47185 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47268 * 299.99933 * 21 19 17 25 25 C 1.47023 * 108.70238 * 335.99288 * 9 8 7 26 26 H 1.09001 * 109.88319 * 120.47874 * 25 9 8 27 27 C 1.52994 * 110.01615 * 241.57232 * 25 9 8 28 28 H 1.09002 * 109.47379 * 299.99940 * 1 2 3 29 29 H 1.09001 * 109.46782 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47085 * 60.00143 * 1 2 3 31 31 H 1.09003 * 110.99935 * 324.20433 * 7 5 3 32 32 H 1.09001 * 111.00756 * 88.05090 * 7 5 3 33 33 H 1.09002 * 110.20910 * 277.95240 * 8 7 5 34 34 H 1.09004 * 110.51107 * 155.74989 * 8 7 5 35 35 H 1.08997 * 109.47305 * 299.99491 * 13 10 9 36 36 H 1.09004 * 109.47074 * 60.00083 * 13 10 9 37 37 H 1.09000 * 109.47021 * 60.00283 * 15 14 13 38 38 H 1.09003 * 109.47193 * 179.97438 * 15 14 13 39 39 H 1.08999 * 109.47059 * 300.00252 * 15 14 13 40 40 H 1.08997 * 109.47204 * 60.00228 * 16 14 13 41 41 H 1.09003 * 109.47246 * 180.02562 * 16 14 13 42 42 H 1.09000 * 109.47288 * 299.99938 * 16 14 13 43 43 H 0.97002 * 120.00114 * 180.02562 * 20 19 17 44 44 H 1.08995 * 109.47403 * 177.88686 * 27 25 9 45 45 H 1.09002 * 109.47169 * 297.88768 * 27 25 9 46 46 H 1.08999 * 109.47050 * 57.88239 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9776 0.7748 -0.8763 7 6 4.1476 0.6650 1.3034 8 6 5.4938 1.4257 1.4267 9 7 5.2033 2.7917 0.9545 10 16 6.0518 4.1544 1.3613 11 8 7.3515 3.6760 1.6794 12 8 5.8435 5.0366 0.2670 13 6 5.2211 4.7777 2.8486 14 6 5.9214 6.0506 3.3282 15 6 7.3831 5.7368 3.6541 16 6 5.8607 7.1117 2.2277 17 6 5.2317 6.5681 4.5642 18 1 4.3790 6.0420 4.9671 19 6 5.6887 7.7139 5.1801 20 7 6.7269 8.3549 4.6893 21 14 4.8334 8.3557 6.7117 22 1 4.8929 7.3259 7.7801 23 1 5.5132 9.5912 7.1774 24 1 3.4147 8.6598 6.3957 25 6 4.0361 2.7437 0.0619 26 1 3.2389 3.3715 0.4600 27 6 4.4267 3.2239 -1.3372 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 3.5016 0.8760 2.1556 32 1 4.3100 -0.4073 1.1943 33 1 6.2495 0.9586 0.7950 34 1 5.8275 1.4459 2.4642 35 1 4.1798 5.0009 2.6166 36 1 5.2648 4.0219 3.6329 37 1 7.8822 5.3623 2.7604 38 1 7.8821 6.6438 3.9954 39 1 7.4263 4.9808 4.4382 40 1 4.8195 7.3353 1.9956 41 1 6.3600 8.0185 2.5692 42 1 6.3598 6.7372 1.3340 43 1 7.0487 9.1608 5.1228 44 1 3.5651 3.1493 -2.0007 45 1 4.7572 4.2614 -1.2862 46 1 5.2361 2.6033 -1.7216 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451445495.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:12 Heat of formation + Delta-G solvation = -153.559003 kcal Electronic energy + Delta-G solvation = -28705.814179 eV Core-core repulsion = 24723.164306 eV Total energy + Delta-G solvation = -3982.649873 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.98934 -38.66937 -36.65202 -36.59365 -36.26262 -35.30969 -31.73482 -31.61523 -31.38103 -28.18593 -26.69490 -26.07407 -25.71175 -25.22103 -22.90230 -22.15224 -20.45328 -19.45483 -18.55341 -17.97969 -17.31806 -16.92553 -16.43887 -15.99644 -15.85632 -15.29805 -14.85954 -14.76473 -14.12458 -14.01550 -13.74521 -13.53501 -13.15642 -13.04008 -12.99816 -12.71832 -12.49791 -12.39830 -12.04027 -12.00831 -11.83230 -11.51182 -11.46390 -11.17644 -11.11627 -11.05853 -11.03937 -10.93821 -10.81760 -10.63981 -10.57275 -10.37940 -10.23952 -10.09772 -9.64686 -9.58345 -8.95499 -8.61836 -8.39269 -6.02727 -4.14724 0.77725 1.91791 2.36014 3.08845 3.27729 3.32988 3.34884 4.04160 4.13865 4.32725 4.39925 4.48498 4.72490 4.79948 4.84235 4.89365 5.01519 5.04131 5.22219 5.22680 5.31093 5.40407 5.47868 5.55942 5.62431 5.67724 5.77166 5.84472 5.95663 6.08026 6.22925 6.39094 6.48903 6.51652 6.71301 6.79996 6.90655 7.04341 7.31964 7.45555 7.50937 7.68360 7.98513 8.09999 8.33609 8.83460 9.50564 10.98583 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.015751 B = 0.003657 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.236682 B = 7655.529110 C = 8518.483586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.471 3.529 4 O -0.497 6.497 5 C -0.092 4.092 6 H 0.124 0.876 7 C -0.118 4.118 8 C 0.122 3.878 9 N -1.018 6.018 10 S 2.607 3.393 11 O -0.958 6.958 12 O -0.954 6.954 13 C -0.582 4.582 14 C 0.082 3.918 15 C -0.163 4.163 16 C -0.163 4.163 17 C -0.502 4.502 18 H 0.058 0.942 19 C 0.065 3.935 20 N -0.884 5.884 21 Si 0.896 3.104 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.277 1.277 25 C 0.161 3.839 26 H 0.093 0.907 27 C -0.183 4.183 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.027 0.973 38 H 0.095 0.905 39 H 0.036 0.964 40 H 0.036 0.964 41 H 0.095 0.905 42 H 0.028 0.972 43 H 0.263 0.737 44 H 0.063 0.937 45 H 0.100 0.900 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.981 -18.116 -9.247 21.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.313 3.687 4 O -0.384 6.384 5 C -0.112 4.112 6 H 0.142 0.858 7 C -0.157 4.157 8 C -0.004 4.004 9 N -0.854 5.854 10 S 2.708 3.292 11 O -0.949 6.949 12 O -0.944 6.944 13 C -0.716 4.716 14 C 0.080 3.920 15 C -0.221 4.221 16 C -0.221 4.221 17 C -0.542 4.542 18 H 0.076 0.924 19 C -0.137 4.137 20 N -0.522 5.522 21 Si 0.724 3.276 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.203 1.203 25 C 0.055 3.945 26 H 0.111 0.889 27 C -0.241 4.241 28 H 0.083 0.917 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.115 0.885 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.046 0.954 38 H 0.114 0.886 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.114 0.886 42 H 0.047 0.953 43 H 0.073 0.927 44 H 0.082 0.918 45 H 0.119 0.881 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.284 -17.265 -9.697 21.099 hybrid contribution -1.334 0.263 1.343 1.911 sum -8.618 -17.001 -8.354 20.811 Atomic orbital electron populations 1.23295 0.76177 1.03714 1.02764 1.86497 1.23509 1.33235 1.84131 1.23433 0.91560 0.81455 0.72286 1.90707 1.66896 1.36214 1.44568 1.22195 0.87490 0.98975 1.02554 0.85774 1.22862 0.96755 1.00621 0.95491 1.21962 0.96283 0.81566 1.00546 1.59097 1.44983 1.21331 1.59953 1.05403 0.74542 0.71933 0.77361 1.93541 1.35771 1.79465 1.86078 1.93496 1.86022 1.63898 1.51014 1.30576 1.12785 1.10865 1.17331 1.17932 0.92234 0.86303 0.95525 1.22279 0.97686 1.02945 0.99205 1.22271 1.00611 1.03534 0.95692 1.20905 1.14341 1.09523 1.09411 0.92386 1.24935 0.94975 0.96414 0.97379 1.69793 1.24145 1.18307 1.39961 0.86594 0.79682 0.78257 0.83078 1.20279 1.21155 1.20258 1.21130 0.88038 0.93794 0.91550 0.88899 1.22537 1.01644 1.05236 0.94687 0.91732 0.88045 0.91807 0.89917 0.88536 0.90837 0.89906 0.86386 0.86515 0.95419 0.88606 0.94495 0.94437 0.88647 0.95341 0.92679 0.91819 0.88147 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.29 10.57 -39.25 -0.41 -3.71 16 3 C 0.47 5.17 7.26 36.01 0.26 5.44 16 4 O -0.50 -6.98 15.19 -18.75 -0.28 -7.26 16 5 C -0.09 -0.90 2.97 -89.94 -0.27 -1.16 16 6 H 0.12 0.94 7.85 -51.93 -0.41 0.53 16 7 C -0.12 -1.00 6.54 -24.47 -0.16 -1.16 16 8 C 0.12 1.33 6.89 -2.42 -0.02 1.31 16 9 N -1.02 -14.58 3.33 -104.30 -0.35 -14.93 16 10 S 2.61 48.96 4.67 -107.50 -0.50 48.46 16 11 O -0.96 -19.99 15.22 -57.54 -0.88 -20.87 16 12 O -0.95 -19.67 12.64 -57.54 -0.73 -20.39 16 13 C -0.58 -11.65 5.12 37.16 0.19 -11.46 16 14 C 0.08 2.02 0.52 -155.66 -0.08 1.94 16 15 C -0.16 -4.05 7.77 37.16 0.29 -3.76 16 16 C -0.16 -4.06 7.78 37.16 0.29 -3.78 16 17 C -0.50 -13.36 8.01 -34.44 -0.28 -13.64 16 18 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 19 C 0.06 1.74 5.15 -17.82 -0.09 1.65 16 20 N -0.88 -24.29 9.35 55.43 0.52 -23.77 16 21 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 C 0.16 2.11 3.07 -66.96 -0.21 1.90 16 26 H 0.09 1.33 6.84 -51.93 -0.36 0.98 16 27 C -0.18 -2.37 8.98 37.15 0.33 -2.04 16 28 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 29 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 31 H 0.08 0.71 8.04 -51.93 -0.42 0.29 16 32 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.12 2.21 8.14 -51.93 -0.42 1.79 16 36 H 0.12 2.12 8.14 -51.92 -0.42 1.69 16 37 H 0.03 0.65 5.46 -51.93 -0.28 0.36 16 38 H 0.10 2.55 6.07 -51.93 -0.32 2.24 16 39 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.09 2.55 6.07 -51.93 -0.32 2.24 16 42 H 0.03 0.67 5.47 -51.93 -0.28 0.38 16 43 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.10 1.57 5.69 -51.93 -0.30 1.28 16 46 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 367.67 15.07 5.54 5.54 Total: -1.00 -32.88 367.67 -8.07 -40.95 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -7.29 Total: 3.64 kcal Atomic # 6 Polarization: -24.78 SS G_CDS: 1.33 Total: -23.45 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.17 Total: -38.70 kcal Atomic # 8 Polarization: -49.93 SS G_CDS: -2.30 Total: -52.23 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 48.96 SS G_CDS: -0.50 Total: 48.46 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.88 -8.07 -40.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451445495.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.613 kcal (2) G-P(sol) polarization free energy of solvation -32.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds