Wall clock time and date at job start Tue Mar 31 2020 17:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 116.99985 * 2 1 4 4 O 1.20826 * 120.00319 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00394 * 179.97438 * 3 2 1 6 6 H 1.09005 * 110.63442 * 59.29910 * 5 3 2 7 7 C 1.55153 * 110.72318 * 296.16284 * 5 3 2 8 8 C 1.55116 * 101.48418 * 206.26217 * 7 5 3 9 9 N 1.47420 * 104.94587 * 36.77757 * 8 7 5 10 10 S 1.65602 * 125.65198 * 156.03121 * 9 8 7 11 11 O 1.42103 * 104.27267 * 26.02988 * 10 9 8 12 12 O 1.42098 * 104.27827 * 153.88221 * 10 9 8 13 13 C 1.81399 * 104.44855 * 269.95820 * 10 9 8 14 14 C 1.53000 * 109.46880 * 179.97438 * 13 10 9 15 15 C 1.53008 * 109.47121 * 299.99814 * 14 13 10 16 16 C 1.52998 * 109.47216 * 59.99899 * 14 13 10 17 17 C 1.50695 * 109.47151 * 180.02562 * 14 13 10 18 18 H 1.08000 * 120.00278 * 359.97438 * 17 14 13 19 19 C 1.37877 * 120.00375 * 180.02562 * 17 14 13 20 20 N 1.31519 * 119.99848 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 120.00259 * 179.97438 * 19 17 14 22 22 H 1.48503 * 109.46924 * 60.00260 * 21 19 17 23 23 H 1.48507 * 109.47185 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47268 * 299.99933 * 21 19 17 25 25 C 1.47023 * 108.70238 * 335.99288 * 9 8 7 26 26 H 1.09001 * 109.88319 * 120.47874 * 25 9 8 27 27 C 1.52994 * 110.01615 * 241.57232 * 25 9 8 28 28 H 1.09002 * 109.47379 * 299.99940 * 1 2 3 29 29 H 1.09001 * 109.46782 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47085 * 60.00143 * 1 2 3 31 31 H 1.09003 * 110.99935 * 324.20433 * 7 5 3 32 32 H 1.09001 * 111.00756 * 88.05090 * 7 5 3 33 33 H 1.09002 * 110.20910 * 277.95240 * 8 7 5 34 34 H 1.09004 * 110.51107 * 155.74989 * 8 7 5 35 35 H 1.08997 * 109.47305 * 299.99491 * 13 10 9 36 36 H 1.09004 * 109.47074 * 60.00083 * 13 10 9 37 37 H 1.09000 * 109.47021 * 60.00283 * 15 14 13 38 38 H 1.09003 * 109.47193 * 179.97438 * 15 14 13 39 39 H 1.08999 * 109.47059 * 300.00252 * 15 14 13 40 40 H 1.08997 * 109.47204 * 60.00228 * 16 14 13 41 41 H 1.09003 * 109.47246 * 180.02562 * 16 14 13 42 42 H 1.09000 * 109.47288 * 299.99938 * 16 14 13 43 43 H 0.97002 * 120.00114 * 180.02562 * 20 19 17 44 44 H 1.08995 * 109.47403 * 177.88686 * 27 25 9 45 45 H 1.09002 * 109.47169 * 297.88768 * 27 25 9 46 46 H 1.08999 * 109.47050 * 57.88239 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9776 0.7748 -0.8763 7 6 4.1476 0.6650 1.3034 8 6 5.4938 1.4257 1.4267 9 7 5.2033 2.7917 0.9545 10 16 6.0518 4.1544 1.3613 11 8 7.3515 3.6760 1.6794 12 8 5.8435 5.0366 0.2670 13 6 5.2211 4.7777 2.8486 14 6 5.9214 6.0506 3.3282 15 6 7.3831 5.7368 3.6541 16 6 5.8607 7.1117 2.2277 17 6 5.2317 6.5681 4.5642 18 1 4.3790 6.0420 4.9671 19 6 5.6887 7.7139 5.1801 20 7 6.7269 8.3549 4.6893 21 14 4.8334 8.3557 6.7117 22 1 4.8929 7.3259 7.7801 23 1 5.5132 9.5912 7.1774 24 1 3.4147 8.6598 6.3957 25 6 4.0361 2.7437 0.0619 26 1 3.2389 3.3715 0.4600 27 6 4.4267 3.2239 -1.3372 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 3.5016 0.8760 2.1556 32 1 4.3100 -0.4073 1.1943 33 1 6.2495 0.9586 0.7950 34 1 5.8275 1.4459 2.4642 35 1 4.1798 5.0009 2.6166 36 1 5.2648 4.0219 3.6329 37 1 7.8822 5.3623 2.7604 38 1 7.8821 6.6438 3.9954 39 1 7.4263 4.9808 4.4382 40 1 4.8195 7.3353 1.9956 41 1 6.3600 8.0185 2.5692 42 1 6.3598 6.7372 1.3340 43 1 7.0487 9.1608 5.1228 44 1 3.5651 3.1493 -2.0007 45 1 4.7572 4.2614 -1.2862 46 1 5.2361 2.6033 -1.7216 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451445495.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:11 Heat of formation + Delta-G solvation = -174.702518 kcal Electronic energy + Delta-G solvation = -28706.731031 eV Core-core repulsion = 24723.164306 eV Total energy + Delta-G solvation = -3983.566725 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.81568 -39.56368 -38.17185 -38.14780 -37.46726 -36.91020 -33.65972 -32.62697 -32.31660 -28.89327 -28.31668 -27.71787 -27.27367 -26.98085 -23.78809 -23.06670 -21.37375 -21.25054 -19.73764 -19.19929 -18.36860 -17.96030 -17.74658 -17.25789 -17.13322 -16.85243 -16.61049 -16.05276 -15.20603 -14.99107 -14.81392 -14.72413 -14.57779 -14.45451 -14.34697 -13.99796 -13.89200 -13.57640 -13.29329 -13.14098 -12.96520 -12.87489 -12.81988 -12.79840 -12.70099 -12.54792 -12.43800 -12.20398 -12.17552 -11.99285 -11.87646 -11.78036 -11.72667 -11.59352 -11.44960 -11.39576 -10.67784 -10.43243 -9.96118 -8.05175 -6.24148 -0.70279 1.10543 1.43312 1.43788 1.51242 1.56351 1.86354 2.42432 2.85945 3.07382 3.17144 3.20305 3.55404 3.76313 3.95248 4.08502 4.10482 4.21384 4.23953 4.34265 4.35824 4.38425 4.53044 4.56859 4.68555 4.75424 4.76635 4.81681 4.83603 4.90096 4.95643 5.01995 5.05025 5.11436 5.23794 5.33081 5.35706 5.41875 5.45392 5.51696 5.61712 5.95047 6.08788 6.31948 6.67158 6.79742 7.44003 8.94550 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.015751 B = 0.003657 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.236682 B = 7655.529110 C = 8518.483586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.352 6.352 3 C 0.475 3.525 4 O -0.536 6.536 5 C -0.084 4.084 6 H 0.156 0.844 7 C -0.106 4.106 8 C 0.106 3.894 9 N -1.014 6.014 10 S 2.629 3.371 11 O -0.980 6.980 12 O -0.977 6.977 13 C -0.590 4.590 14 C 0.070 3.930 15 C -0.158 4.158 16 C -0.159 4.159 17 C -0.521 4.521 18 H 0.059 0.941 19 C 0.019 3.981 20 N -0.907 5.907 21 Si 0.954 3.046 22 H -0.270 1.270 23 H -0.285 1.285 24 H -0.274 1.274 25 C 0.152 3.848 26 H 0.074 0.926 27 C -0.183 4.183 28 H 0.058 0.942 29 H 0.134 0.866 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.135 0.865 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.125 0.875 36 H 0.133 0.867 37 H 0.033 0.967 38 H 0.072 0.928 39 H 0.041 0.959 40 H 0.035 0.965 41 H 0.072 0.928 42 H 0.034 0.966 43 H 0.262 0.738 44 H 0.078 0.922 45 H 0.068 0.932 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.010 -21.038 -9.377 24.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.268 6.268 3 C 0.318 3.682 4 O -0.425 6.425 5 C -0.105 4.105 6 H 0.173 0.827 7 C -0.145 4.145 8 C -0.018 4.018 9 N -0.852 5.852 10 S 2.728 3.272 11 O -0.970 6.970 12 O -0.967 6.967 13 C -0.722 4.722 14 C 0.068 3.932 15 C -0.216 4.216 16 C -0.216 4.216 17 C -0.560 4.560 18 H 0.078 0.922 19 C -0.181 4.181 20 N -0.545 5.545 21 Si 0.780 3.220 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.199 1.199 25 C 0.046 3.954 26 H 0.092 0.908 27 C -0.241 4.241 28 H 0.077 0.923 29 H 0.152 0.848 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.153 0.847 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.143 0.857 36 H 0.152 0.848 37 H 0.052 0.948 38 H 0.091 0.909 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.091 0.909 42 H 0.053 0.947 43 H 0.072 0.928 44 H 0.097 0.903 45 H 0.087 0.913 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.314 -20.199 -9.808 23.944 hybrid contribution -1.070 1.089 1.321 2.019 sum -9.384 -19.110 -8.487 22.919 Atomic orbital electron populations 1.23569 0.74835 1.05798 1.02424 1.86488 1.24783 1.32004 1.83517 1.23627 0.91949 0.81382 0.71216 1.90704 1.67769 1.37540 1.46503 1.22190 0.86873 0.96677 1.04721 0.82702 1.22907 0.94799 1.02310 0.94499 1.22386 0.98386 0.79764 1.01230 1.58681 1.45097 1.21517 1.59936 1.04414 0.74120 0.72325 0.76348 1.93504 1.37240 1.80007 1.86255 1.93474 1.86336 1.65629 1.51282 1.30547 1.12950 1.09468 1.19279 1.17917 0.92283 0.88123 0.94894 1.22194 0.98030 1.01880 0.99506 1.22194 1.00216 1.02978 0.96251 1.21253 1.14556 1.09874 1.10335 0.92246 1.25675 0.95598 0.96756 1.00053 1.69931 1.25147 1.18478 1.40986 0.85671 0.78651 0.77710 0.79950 1.19559 1.21023 1.19922 1.21238 0.86951 0.96218 0.90951 0.90784 1.22507 1.02810 1.03584 0.95215 0.92334 0.84751 0.91999 0.90147 0.84720 0.89045 0.89472 0.85652 0.84825 0.94826 0.90924 0.94031 0.94546 0.90924 0.94692 0.92813 0.90297 0.91272 0.90673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 113.37 1.20 1.50 16 2 O -0.35 -5.44 10.57 -51.40 -0.54 -5.98 16 3 C 0.47 9.37 7.26 71.24 0.52 9.88 16 4 O -0.54 -14.58 15.19 21.96 0.33 -14.25 16 5 C -0.08 -1.39 2.97 -10.35 -0.03 -1.42 16 6 H 0.16 1.63 7.85 -2.38 -0.02 1.61 16 7 C -0.11 -1.39 6.54 32.06 0.21 -1.18 16 8 C 0.11 2.00 6.89 86.93 0.60 2.60 16 9 N -1.01 -27.49 3.33 -483.90 -1.61 -29.10 16 10 S 2.63 97.86 4.67 -56.49 -0.26 97.59 16 11 O -0.98 -40.30 15.22 -127.65 -1.94 -42.25 16 12 O -0.98 -40.77 12.64 -127.65 -1.61 -42.38 16 13 C -0.59 -23.57 5.12 71.98 0.37 -23.20 16 14 C 0.07 3.47 0.52 -52.93 -0.03 3.44 16 15 C -0.16 -7.96 7.77 71.98 0.56 -7.40 16 16 C -0.16 -8.11 7.78 71.98 0.56 -7.55 16 17 C -0.52 -27.90 8.01 25.60 0.21 -27.70 16 18 H 0.06 3.08 7.74 -2.91 -0.02 3.05 16 19 C 0.02 1.01 5.15 84.65 0.44 1.45 16 20 N -0.91 -50.89 9.35 21.45 0.20 -50.69 16 21 Si 0.95 42.81 29.54 68.60 2.03 44.84 16 22 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 23 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 24 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 25 C 0.15 3.77 3.07 45.34 0.14 3.91 16 26 H 0.07 2.12 6.84 -2.39 -0.02 2.10 16 27 C -0.18 -4.53 8.98 71.98 0.65 -3.89 16 28 H 0.06 0.74 8.13 -2.39 -0.02 0.73 16 29 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.74 8.13 -2.38 -0.02 0.72 16 31 H 0.08 1.12 8.04 -2.39 -0.02 1.10 16 32 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 35 H 0.13 4.73 8.14 -2.39 -0.02 4.71 16 36 H 0.13 4.75 8.14 -2.39 -0.02 4.73 16 37 H 0.03 1.60 5.46 -2.39 -0.01 1.59 16 38 H 0.07 3.97 6.07 -2.39 -0.01 3.96 16 39 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.07 4.02 6.07 -2.39 -0.01 4.01 16 42 H 0.03 1.69 5.47 -2.39 -0.01 1.68 16 43 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 44 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.07 2.18 5.69 -2.39 -0.01 2.17 16 46 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -72.24 367.67 2.93 -69.31 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 0.97 Total: 22.45 kcal Atomic # 6 Polarization: -54.92 SS G_CDS: 5.38 Total: -49.54 kcal Atomic # 7 Polarization: -78.38 SS G_CDS: -1.41 Total: -79.80 kcal Atomic # 8 Polarization: -101.09 SS G_CDS: -3.77 Total: -104.86 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Atomic # 16 Polarization: 97.86 SS G_CDS: -0.26 Total: 97.59 kcal Total: -72.24 2.93 -69.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451445495.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.395 kcal (2) G-P(sol) polarization free energy of solvation -72.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds