Wall clock time and date at job start Tue Mar 31 2020 18:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46501 * 109.47318 * 2 1 4 4 C 1.46497 * 119.99998 * 270.00034 * 3 2 1 5 5 C 1.50694 * 109.47531 * 269.99746 * 4 3 2 6 6 H 1.08001 * 119.99999 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00118 * 180.02562 * 5 4 3 8 8 N 1.31510 * 119.99845 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00002 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47339 * 89.99621 * 9 7 5 11 11 H 1.48494 * 109.47115 * 209.99927 * 9 7 5 12 12 H 1.48500 * 109.47040 * 329.99884 * 9 7 5 13 13 C 1.34780 * 119.99828 * 90.00214 * 3 2 1 14 14 O 1.21281 * 119.99723 * 180.02562 * 13 3 2 15 15 C 1.50697 * 119.99926 * 0.02562 * 13 3 2 16 16 H 1.09002 * 109.47120 * 324.99762 * 15 13 3 17 17 C 1.52997 * 109.47466 * 85.00009 * 15 13 3 18 18 S 1.81405 * 109.47038 * 205.00342 * 15 13 3 19 19 O 1.42104 * 108.57401 * 299.48342 * 18 15 13 20 20 O 1.42093 * 108.58055 * 70.50526 * 18 15 13 21 21 C 1.81401 * 101.92300 * 184.99986 * 18 15 13 22 22 C 1.53179 * 109.53889 * 304.82149 * 21 18 15 23 23 C 1.53111 * 109.15300 * 183.24298 * 22 21 18 24 24 O 1.42905 * 109.48737 * 57.47325 * 23 22 21 25 25 C 1.42899 * 114.09621 * 298.88718 * 24 23 22 26 26 C 1.53093 * 109.41608 * 61.15960 * 25 24 23 27 27 H 1.09000 * 109.47342 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46738 * 299.99660 * 1 2 3 29 29 H 1.08996 * 109.47528 * 59.99760 * 1 2 3 30 30 H 1.09001 * 109.47441 * 240.00122 * 2 1 3 31 31 H 1.09005 * 109.47569 * 120.00351 * 2 1 3 32 32 H 1.09002 * 109.47034 * 30.00671 * 4 3 2 33 33 H 1.09010 * 109.46891 * 149.99719 * 4 3 2 34 34 H 0.97005 * 119.99406 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.47153 * 59.99773 * 17 15 13 36 36 H 1.09001 * 109.46832 * 299.99964 * 17 15 13 37 37 H 1.09004 * 109.47261 * 179.97438 * 17 15 13 38 38 H 1.08995 * 109.54371 * 64.99463 * 21 18 15 39 39 H 1.08999 * 109.52147 * 303.05135 * 22 21 18 40 40 H 1.08994 * 109.52404 * 63.24628 * 22 21 18 41 41 H 1.08999 * 109.40280 * 297.48942 * 23 22 21 42 42 H 1.08997 * 109.48110 * 177.50288 * 23 22 21 43 43 H 1.09007 * 109.48373 * 301.17629 * 25 24 23 44 44 H 1.08996 * 109.49295 * 181.15277 * 25 24 23 45 45 H 1.09004 * 109.52257 * 182.48599 * 26 25 24 46 46 H 1.09000 * 109.57162 * 62.32712 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1493 2.3906 -2.8775 8 7 3.3492 3.1266 -3.6175 9 14 5.9133 2.0965 -3.4171 10 1 5.9760 0.8760 -4.2607 11 1 6.3928 3.2641 -4.1994 12 1 6.7735 1.9156 -2.2202 13 6 2.2430 2.0165 1.1673 14 8 2.6469 3.1601 1.1672 15 6 1.9924 1.3059 2.4723 16 1 1.1333 0.6435 2.3662 17 6 3.2262 0.4842 2.8508 18 16 1.6574 2.5271 3.7712 19 8 2.7925 3.3720 3.9017 20 8 0.3839 3.1087 3.5282 21 6 1.5428 1.4809 5.2487 22 6 0.4907 0.3905 5.0240 23 6 0.3432 -0.4366 6.3039 24 8 -0.0112 0.4232 7.3890 25 6 0.9596 1.4320 7.6750 26 6 1.1303 2.3356 6.4510 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.5816 1.6878 -2.0283 33 1 2.0955 3.1411 -1.1383 34 1 3.6755 3.5177 -4.4431 35 1 4.0854 1.1466 2.9569 36 1 3.4275 -0.2496 2.0703 37 1 3.0451 -0.0295 3.7950 38 1 2.5105 1.0191 5.4444 39 1 -0.4655 0.8522 4.7780 40 1 0.8055 -0.2562 4.2050 41 1 1.2885 -0.9317 6.5262 42 1 -0.4359 -1.1861 6.1647 43 1 1.9131 0.9614 7.9152 44 1 0.6249 2.0287 8.5235 45 1 1.9022 3.0787 6.6516 46 1 0.1880 2.8386 6.2342 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488188906.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:24 Heat of formation + Delta-G solvation = -154.321309 kcal Electronic energy + Delta-G solvation = -28692.195405 eV Core-core repulsion = 24709.512476 eV Total energy + Delta-G solvation = -3982.682929 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.66748 -39.47885 -36.94458 -35.95163 -35.52579 -34.61914 -33.42799 -32.54283 -31.51652 -30.23948 -27.32085 -25.91806 -24.98069 -24.15037 -23.16493 -22.50696 -21.10906 -19.20638 -18.43547 -17.68172 -16.85572 -16.59980 -16.47648 -16.33771 -16.06392 -15.62434 -15.28580 -15.02620 -14.65983 -14.39298 -14.31624 -14.07889 -13.66706 -13.36893 -13.11797 -12.87468 -12.82807 -12.36641 -12.22062 -12.04787 -12.03528 -11.97404 -11.90564 -11.80302 -11.64285 -11.46265 -11.36898 -11.26952 -10.96836 -10.85360 -10.69962 -10.60741 -10.46480 -10.19295 -9.78701 -9.71624 -9.24406 -8.47610 -7.84159 -6.08560 -4.13847 -0.14022 2.66550 3.03861 3.27441 3.34903 3.36298 3.41000 3.45488 3.75527 3.80163 4.08067 4.23233 4.39660 4.45956 4.50840 4.53938 4.73748 4.77156 4.84059 4.94167 5.01166 5.05050 5.15940 5.20268 5.22913 5.24608 5.27494 5.44191 5.45509 5.49251 5.50768 5.62798 5.64750 5.85602 5.97485 6.11678 6.39227 6.74419 6.89650 7.35080 7.39711 7.86048 8.15565 8.18776 8.69432 8.91498 9.51097 10.99760 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.021828 B = 0.003361 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.464301 B = 8328.379866 C = 8689.220497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.099 3.901 3 N -0.580 5.580 4 C 0.243 3.757 5 C -0.530 4.530 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.893 5.893 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.284 1.284 12 H -0.274 1.274 13 C 0.532 3.468 14 O -0.523 6.523 15 C -0.614 4.614 16 H 0.149 0.851 17 C -0.136 4.136 18 S 2.445 3.555 19 O -0.906 6.906 20 O -0.927 6.927 21 C -0.586 4.586 22 C -0.150 4.150 23 C 0.069 3.931 24 O -0.379 6.379 25 C 0.071 3.929 26 C -0.144 4.144 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.037 0.963 33 H 0.047 0.953 34 H 0.264 0.736 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.141 0.859 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.055 0.945 42 H 0.102 0.898 43 H 0.056 0.944 44 H 0.102 0.898 45 H 0.092 0.908 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.352 -11.715 20.258 24.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.025 4.025 3 N -0.311 5.311 4 C 0.125 3.875 5 C -0.569 4.569 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.531 5.531 9 Si 0.727 3.273 10 H -0.207 1.207 11 H -0.210 1.210 12 H -0.198 1.198 13 C 0.315 3.685 14 O -0.400 6.400 15 C -0.724 4.724 16 H 0.167 0.833 17 C -0.194 4.194 18 S 2.624 3.376 19 O -0.903 6.903 20 O -0.924 6.924 21 C -0.693 4.693 22 C -0.188 4.188 23 C -0.009 4.009 24 O -0.298 6.298 25 C -0.007 4.007 26 C -0.183 4.183 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.159 0.841 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.074 0.926 42 H 0.120 0.880 43 H 0.074 0.926 44 H 0.120 0.880 45 H 0.110 0.890 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.392 -10.100 20.037 23.331 hybrid contribution 1.314 -1.125 -0.689 1.862 sum -5.078 -11.225 19.348 22.938 Atomic orbital electron populations 1.22284 0.96518 1.01722 1.02788 1.21571 0.93754 0.84064 1.03106 1.48150 1.62426 1.13327 1.07188 1.19414 0.96665 0.93876 0.77561 1.21388 0.96725 1.32286 1.06451 0.92339 1.24939 0.97964 0.94803 0.96357 1.69930 1.35742 1.33125 1.14317 0.86472 0.84512 0.77691 0.78602 1.20652 1.21006 1.19843 1.18878 0.79530 0.86393 0.83705 1.90853 1.45667 1.17155 1.86365 1.30679 1.09318 1.18076 1.14324 0.83302 1.21632 0.94602 1.00436 1.02758 1.07851 0.75750 0.76981 0.77062 1.93587 1.51723 1.60488 1.84534 1.93557 1.42001 1.72993 1.83860 1.30433 1.07968 1.12464 1.18459 1.22182 0.98860 0.97015 1.00740 1.22500 1.01395 0.91819 0.85144 1.87956 1.45589 1.44869 1.51357 1.22500 0.92820 0.89335 0.96065 1.22040 1.04049 0.98279 0.93902 0.91808 0.92941 0.91584 0.89436 0.91330 0.94497 0.93509 0.92604 0.89681 0.89412 0.90749 0.84107 0.88722 0.89063 0.92637 0.88040 0.92568 0.87984 0.88956 0.89010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 10.08 37.15 0.37 -1.83 16 2 C 0.10 1.48 5.72 -4.04 -0.02 1.46 16 3 N -0.58 -12.05 2.46 -175.06 -0.43 -12.48 16 4 C 0.24 6.32 5.16 -5.20 -0.03 6.30 16 5 C -0.53 -14.85 9.39 -34.44 -0.32 -15.18 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 9 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.53 11.15 6.80 -10.99 -0.07 11.08 16 14 O -0.52 -13.69 15.06 -9.37 -0.14 -13.83 16 15 C -0.61 -8.65 1.57 -27.89 -0.04 -8.69 16 16 H 0.15 1.53 4.91 -51.92 -0.25 1.27 16 17 C -0.14 -1.48 8.62 37.16 0.32 -1.16 16 18 S 2.45 36.51 3.43 -107.50 -0.37 36.15 16 19 O -0.91 -17.18 17.21 -64.29 -1.11 -18.29 16 20 O -0.93 -16.59 18.04 -57.83 -1.04 -17.64 16 21 C -0.59 -5.26 1.96 -26.55 -0.05 -5.31 16 22 C -0.15 -1.08 5.01 -26.58 -0.13 -1.22 16 23 C 0.07 0.45 6.84 37.21 0.25 0.70 16 24 O -0.38 -3.35 10.77 -35.23 -0.38 -3.73 16 25 C 0.07 0.51 6.84 37.21 0.25 0.76 16 26 C -0.14 -1.27 5.42 -26.59 -0.14 -1.41 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.63 7.23 -51.93 -0.38 0.25 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.09 1.35 8.07 -51.93 -0.42 0.93 16 31 H 0.07 0.79 5.17 -51.93 -0.27 0.52 16 32 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 33 H 0.05 1.38 7.42 -51.92 -0.39 1.00 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.09 0.92 6.84 -51.93 -0.36 0.56 16 37 H 0.07 0.45 6.07 -51.93 -0.32 0.14 16 38 H 0.14 0.88 7.07 -51.93 -0.37 0.52 16 39 H 0.09 0.76 8.12 -51.93 -0.42 0.34 16 40 H 0.09 0.43 6.28 -51.93 -0.33 0.11 16 41 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 374.63 15.07 5.65 5.65 Total: -1.00 -39.16 374.63 -9.08 -48.24 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -7.26 Total: -2.24 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: 0.29 Total: -12.84 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 0.31 Total: -38.19 kcal Atomic # 8 Polarization: -50.82 SS G_CDS: -2.67 Total: -53.49 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: 36.51 SS G_CDS: -0.37 Total: 36.15 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -39.16 -9.08 -48.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488188906.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.083 kcal (2) G-P(sol) polarization free energy of solvation -39.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds