Wall clock time and date at job start Tue Mar 31 2020 18:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46501 * 109.47318 * 2 1 4 4 C 1.46497 * 119.99998 * 270.00034 * 3 2 1 5 5 C 1.50694 * 109.47531 * 269.99746 * 4 3 2 6 6 H 1.08001 * 119.99999 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00118 * 180.02562 * 5 4 3 8 8 N 1.31510 * 119.99845 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00002 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47339 * 89.99621 * 9 7 5 11 11 H 1.48494 * 109.47115 * 209.99927 * 9 7 5 12 12 H 1.48500 * 109.47040 * 329.99884 * 9 7 5 13 13 C 1.34780 * 119.99828 * 90.00214 * 3 2 1 14 14 O 1.21281 * 119.99723 * 180.02562 * 13 3 2 15 15 C 1.50697 * 119.99926 * 0.02562 * 13 3 2 16 16 H 1.09002 * 109.47120 * 324.99762 * 15 13 3 17 17 C 1.52997 * 109.47466 * 85.00009 * 15 13 3 18 18 S 1.81405 * 109.47038 * 205.00342 * 15 13 3 19 19 O 1.42104 * 108.57401 * 299.48342 * 18 15 13 20 20 O 1.42093 * 108.58055 * 70.50526 * 18 15 13 21 21 C 1.81401 * 101.92300 * 184.99986 * 18 15 13 22 22 C 1.53179 * 109.53889 * 304.82149 * 21 18 15 23 23 C 1.53111 * 109.15300 * 183.24298 * 22 21 18 24 24 O 1.42905 * 109.48737 * 57.47325 * 23 22 21 25 25 C 1.42899 * 114.09621 * 298.88718 * 24 23 22 26 26 C 1.53093 * 109.41608 * 61.15960 * 25 24 23 27 27 H 1.09000 * 109.47342 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46738 * 299.99660 * 1 2 3 29 29 H 1.08996 * 109.47528 * 59.99760 * 1 2 3 30 30 H 1.09001 * 109.47441 * 240.00122 * 2 1 3 31 31 H 1.09005 * 109.47569 * 120.00351 * 2 1 3 32 32 H 1.09002 * 109.47034 * 30.00671 * 4 3 2 33 33 H 1.09010 * 109.46891 * 149.99719 * 4 3 2 34 34 H 0.97005 * 119.99406 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.47153 * 59.99773 * 17 15 13 36 36 H 1.09001 * 109.46832 * 299.99964 * 17 15 13 37 37 H 1.09004 * 109.47261 * 179.97438 * 17 15 13 38 38 H 1.08995 * 109.54371 * 64.99463 * 21 18 15 39 39 H 1.08999 * 109.52147 * 303.05135 * 22 21 18 40 40 H 1.08994 * 109.52404 * 63.24628 * 22 21 18 41 41 H 1.08999 * 109.40280 * 297.48942 * 23 22 21 42 42 H 1.08997 * 109.48110 * 177.50288 * 23 22 21 43 43 H 1.09007 * 109.48373 * 301.17629 * 25 24 23 44 44 H 1.08996 * 109.49295 * 181.15277 * 25 24 23 45 45 H 1.09004 * 109.52257 * 182.48599 * 26 25 24 46 46 H 1.09000 * 109.57162 * 62.32712 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1493 2.3906 -2.8775 8 7 3.3492 3.1266 -3.6175 9 14 5.9133 2.0965 -3.4171 10 1 5.9760 0.8760 -4.2607 11 1 6.3928 3.2641 -4.1994 12 1 6.7735 1.9156 -2.2202 13 6 2.2430 2.0165 1.1673 14 8 2.6469 3.1601 1.1672 15 6 1.9924 1.3059 2.4723 16 1 1.1333 0.6435 2.3662 17 6 3.2262 0.4842 2.8508 18 16 1.6574 2.5271 3.7712 19 8 2.7925 3.3720 3.9017 20 8 0.3839 3.1087 3.5282 21 6 1.5428 1.4809 5.2487 22 6 0.4907 0.3905 5.0240 23 6 0.3432 -0.4366 6.3039 24 8 -0.0112 0.4232 7.3890 25 6 0.9596 1.4320 7.6750 26 6 1.1303 2.3356 6.4510 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.5816 1.6878 -2.0283 33 1 2.0955 3.1411 -1.1383 34 1 3.6755 3.5177 -4.4431 35 1 4.0854 1.1466 2.9569 36 1 3.4275 -0.2496 2.0703 37 1 3.0451 -0.0295 3.7950 38 1 2.5105 1.0191 5.4444 39 1 -0.4655 0.8522 4.7780 40 1 0.8055 -0.2562 4.2050 41 1 1.2885 -0.9317 6.5262 42 1 -0.4359 -1.1861 6.1647 43 1 1.9131 0.9614 7.9152 44 1 0.6249 2.0287 8.5235 45 1 1.9022 3.0787 6.6516 46 1 0.1880 2.8386 6.2342 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488188906.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:23 Heat of formation + Delta-G solvation = -185.667907 kcal Electronic energy + Delta-G solvation = -28693.554696 eV Core-core repulsion = 24709.512476 eV Total energy + Delta-G solvation = -3984.042220 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.09897 -40.22287 -38.18507 -37.30484 -37.05853 -35.52542 -34.96006 -34.02952 -32.07655 -31.67574 -29.20674 -26.64542 -26.16532 -25.02244 -24.62317 -23.86699 -21.77265 -20.58911 -19.66254 -18.87636 -18.60423 -17.99725 -17.72594 -17.09807 -16.98060 -16.71386 -16.70837 -16.20744 -15.91852 -15.67031 -15.14964 -14.97670 -14.89322 -14.68350 -14.49697 -14.16654 -13.66770 -13.47205 -13.36098 -13.32655 -13.27228 -13.20579 -13.14029 -12.99140 -12.96045 -12.68851 -12.51591 -12.38828 -12.21809 -12.15216 -11.99306 -11.93745 -11.77501 -11.66069 -11.15866 -10.90040 -10.67818 -10.41241 -9.61046 -8.26630 -6.41821 -1.23878 1.33729 1.38218 1.45290 1.49868 1.63576 1.98927 2.35808 2.67836 2.85080 3.01528 3.03597 3.24203 3.29818 3.37922 3.70187 3.78997 3.90524 3.97651 4.10061 4.26387 4.34439 4.37540 4.47692 4.52366 4.52800 4.56156 4.58776 4.66362 4.83174 4.83655 4.89701 4.91571 4.97939 5.04429 5.08806 5.14039 5.16187 5.36478 5.49840 5.73997 5.98935 6.28760 6.50228 6.67508 7.10260 7.30490 8.81323 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.021828 B = 0.003361 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.464301 B = 8328.379866 C = 8689.220497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.087 3.913 3 N -0.585 5.585 4 C 0.257 3.743 5 C -0.544 4.544 6 H 0.059 0.941 7 C 0.005 3.995 8 N -0.929 5.929 9 Si 0.971 3.029 10 H -0.259 1.259 11 H -0.283 1.283 12 H -0.271 1.271 13 C 0.514 3.486 14 O -0.593 6.593 15 C -0.598 4.598 16 H 0.193 0.807 17 C -0.143 4.143 18 S 2.411 3.589 19 O -0.967 6.967 20 O -0.978 6.978 21 C -0.539 4.539 22 C -0.160 4.160 23 C 0.065 3.935 24 O -0.401 6.401 25 C 0.073 3.927 26 C -0.157 4.157 27 H 0.108 0.892 28 H 0.059 0.941 29 H 0.037 0.963 30 H 0.081 0.919 31 H 0.116 0.884 32 H 0.030 0.970 33 H -0.007 1.007 34 H 0.268 0.732 35 H 0.060 0.940 36 H 0.098 0.902 37 H 0.138 0.862 38 H 0.184 0.816 39 H 0.082 0.918 40 H 0.128 0.872 41 H 0.082 0.918 42 H 0.119 0.881 43 H 0.080 0.920 44 H 0.112 0.888 45 H 0.095 0.905 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.731 -16.547 22.773 28.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.034 4.034 3 N -0.315 5.315 4 C 0.135 3.865 5 C -0.583 4.583 6 H 0.077 0.923 7 C -0.194 4.194 8 N -0.569 5.569 9 Si 0.795 3.205 10 H -0.184 1.184 11 H -0.209 1.209 12 H -0.196 1.196 13 C 0.301 3.699 14 O -0.475 6.475 15 C -0.708 4.708 16 H 0.210 0.790 17 C -0.200 4.200 18 S 2.599 3.401 19 O -0.964 6.964 20 O -0.975 6.975 21 C -0.653 4.653 22 C -0.198 4.198 23 C -0.013 4.013 24 O -0.320 6.320 25 C -0.005 4.005 26 C -0.197 4.197 27 H 0.126 0.874 28 H 0.078 0.922 29 H 0.056 0.944 30 H 0.100 0.900 31 H 0.134 0.866 32 H 0.048 0.952 33 H 0.011 0.989 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.117 0.883 37 H 0.156 0.844 38 H 0.201 0.799 39 H 0.100 0.900 40 H 0.146 0.854 41 H 0.100 0.900 42 H 0.137 0.863 43 H 0.098 0.902 44 H 0.130 0.870 45 H 0.114 0.886 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.795 -14.942 22.502 27.626 hybrid contribution 1.027 0.341 -1.389 1.760 sum -4.768 -14.601 21.114 26.110 Atomic orbital electron populations 1.22281 0.94561 1.04272 1.01848 1.22036 0.95406 0.80795 1.05181 1.48177 1.62293 1.15464 1.05545 1.18842 0.96005 0.91478 0.80125 1.21684 0.97571 1.32337 1.06666 0.92254 1.25926 1.02678 0.94349 0.96440 1.70065 1.37945 1.34042 1.14820 0.85358 0.78590 0.78261 0.78263 1.18377 1.20887 1.19605 1.20013 0.78051 0.85959 0.85909 1.90813 1.48561 1.20427 1.87746 1.30573 1.12760 1.18015 1.09485 0.79017 1.21895 0.91929 0.99848 1.06346 1.08479 0.73957 0.78488 0.79219 1.93510 1.53027 1.64081 1.85781 1.93486 1.43144 1.75524 1.85373 1.30097 1.11278 1.11134 1.12743 1.22464 0.97606 0.96747 1.02985 1.22767 1.03533 0.91472 0.83501 1.87944 1.46571 1.45309 1.52196 1.22615 0.93844 0.89026 0.94981 1.22245 1.03546 0.99082 0.94786 0.87353 0.92229 0.94355 0.90040 0.86574 0.95238 0.98931 0.92359 0.92072 0.88291 0.84380 0.79906 0.89967 0.85387 0.89957 0.86286 0.90152 0.86955 0.88606 0.90647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.94 10.08 71.98 0.73 -3.22 16 2 C 0.09 2.44 5.72 86.38 0.49 2.93 16 3 N -0.59 -24.95 2.46 -826.16 -2.03 -26.98 16 4 C 0.26 14.21 5.16 85.63 0.44 14.65 16 5 C -0.54 -31.65 9.39 25.60 0.24 -31.41 16 6 H 0.06 3.35 7.81 -2.91 -0.02 3.32 16 7 C 0.01 0.30 5.46 84.66 0.46 0.76 16 8 N -0.93 -57.29 13.29 21.45 0.28 -57.01 16 9 Si 0.97 45.23 29.54 68.60 2.03 47.26 16 10 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 13 C 0.51 22.33 6.80 87.66 0.60 22.93 16 14 O -0.59 -33.65 15.06 11.24 0.17 -33.48 16 15 C -0.60 -15.81 1.57 29.85 0.05 -15.76 16 16 H 0.19 3.15 4.91 -2.39 -0.01 3.14 16 17 C -0.14 -2.54 8.62 71.98 0.62 -1.92 16 18 S 2.41 72.52 3.43 -56.49 -0.19 72.32 16 19 O -0.97 -38.89 17.21 -121.20 -2.09 -40.98 16 20 O -0.98 -37.07 18.04 -127.37 -2.30 -39.36 16 21 C -0.54 -7.76 1.96 30.71 0.06 -7.70 16 22 C -0.16 -1.50 5.01 30.69 0.15 -1.35 16 23 C 0.06 0.46 6.84 72.02 0.49 0.96 16 24 O -0.40 -5.40 10.77 -148.98 -1.60 -7.01 16 25 C 0.07 0.78 6.84 72.01 0.49 1.27 16 26 C -0.16 -2.44 5.42 30.68 0.17 -2.28 16 27 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.06 1.28 7.23 -2.39 -0.02 1.26 16 29 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.08 2.39 8.07 -2.39 -0.02 2.37 16 31 H 0.12 2.12 5.17 -2.38 -0.01 2.10 16 32 H 0.03 1.64 8.07 -2.39 -0.02 1.62 16 33 H -0.01 -0.49 7.42 -2.38 -0.02 -0.50 16 34 H 0.27 15.44 8.31 -92.70 -0.77 14.67 16 35 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.10 1.59 6.84 -2.39 -0.02 1.57 16 37 H 0.14 0.66 6.07 -2.38 -0.01 0.65 16 38 H 0.18 1.17 7.07 -2.39 -0.02 1.15 16 39 H 0.08 1.06 8.12 -2.39 -0.02 1.04 16 40 H 0.13 0.26 6.28 -2.39 -0.02 0.25 16 41 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 42 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.08 0.50 8.14 -2.38 -0.02 0.48 16 44 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -98.58 374.63 0.24 -98.34 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: 0.97 Total: 7.03 kcal Atomic # 6 Polarization: -25.13 SS G_CDS: 4.99 Total: -20.14 kcal Atomic # 7 Polarization: -82.24 SS G_CDS: -1.74 Total: -83.99 kcal Atomic # 8 Polarization: -115.01 SS G_CDS: -5.82 Total: -120.82 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Atomic # 16 Polarization: 72.52 SS G_CDS: -0.19 Total: 72.32 kcal Total: -98.58 0.24 -98.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488188906.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.328 kcal (2) G-P(sol) polarization free energy of solvation -98.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds