Wall clock time and date at job start Tue Mar 31 2020 18:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45190 * 1 3 3 C 1.34229 * 117.00263 * 2 1 4 4 O 1.20823 * 119.99822 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00191 * 180.02562 * 3 2 1 6 6 C 1.53004 * 109.47412 * 303.50733 * 5 3 2 7 7 S 1.81407 * 109.46774 * 299.82855 * 6 5 3 8 8 O 1.42103 * 110.54072 * 61.13861 * 7 6 5 9 9 O 1.42094 * 110.54070 * 284.39145 * 7 6 5 10 10 N 1.65593 * 104.44874 * 172.76576 * 7 6 5 11 11 C 1.46493 * 120.00130 * 65.00180 * 10 7 6 12 12 H 1.09000 * 109.47254 * 24.99781 * 11 10 7 13 13 C 1.53008 * 109.47317 * 264.99831 * 11 10 7 14 14 C 1.50701 * 109.47390 * 144.99985 * 11 10 7 15 15 H 1.07994 * 119.99781 * 359.97438 * 14 11 10 16 16 C 1.37878 * 120.00113 * 179.97438 * 14 11 10 17 17 N 1.31515 * 120.00036 * 0.02562 * 16 14 11 18 18 Si 1.86796 * 119.99966 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.47231 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47220 * 120.00104 * 18 16 14 21 21 H 1.48497 * 109.47619 * 240.00211 * 18 16 14 22 22 C 1.53005 * 109.47237 * 63.50457 * 5 3 2 23 23 C 1.53002 * 109.47237 * 180.02562 * 22 5 3 24 24 C 1.53004 * 109.47164 * 300.00096 * 23 22 5 25 25 C 1.53005 * 109.47122 * 59.99834 * 24 23 22 26 26 C 1.52998 * 109.46898 * 300.00032 * 25 24 23 27 27 H 1.08997 * 109.47387 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47376 * 300.00319 * 1 2 3 29 29 H 1.09002 * 109.47420 * 60.00075 * 1 2 3 30 30 H 1.08999 * 109.47535 * 179.83204 * 6 5 3 31 31 H 1.08995 * 109.46973 * 59.82261 * 6 5 3 32 32 H 0.97004 * 120.00037 * 245.27593 * 10 7 6 33 33 H 1.09000 * 109.46918 * 300.00156 * 13 11 10 34 34 H 1.09001 * 109.46497 * 59.99598 * 13 11 10 35 35 H 1.09001 * 109.47347 * 179.97438 * 13 11 10 36 36 H 0.97004 * 120.00063 * 180.02562 * 17 16 14 37 37 H 1.08998 * 109.46830 * 299.99896 * 22 5 3 38 38 H 1.08994 * 109.47040 * 60.00419 * 22 5 3 39 39 H 1.08993 * 109.46860 * 180.02562 * 23 22 5 40 40 H 1.08994 * 109.47302 * 59.99816 * 23 22 5 41 41 H 1.09003 * 109.46879 * 300.00292 * 24 23 22 42 42 H 1.08997 * 109.47306 * 180.02562 * 24 23 22 43 43 H 1.08998 * 109.46830 * 180.02562 * 25 24 23 44 44 H 1.08994 * 109.47040 * 59.99864 * 25 24 23 45 45 H 1.08994 * 109.47544 * 300.00125 * 26 25 24 46 46 H 1.09002 * 109.46541 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2748 -0.0006 6 6 4.1178 0.5060 1.2018 7 16 3.4786 1.2392 2.7331 8 8 2.0605 1.1564 2.7715 9 8 4.1493 2.4586 3.0198 10 7 3.9805 0.2067 3.9264 11 6 5.4102 0.0453 4.2020 12 1 5.9447 0.9407 3.8848 13 6 5.9440 -1.1660 3.4345 14 6 5.6164 -0.1658 5.6798 15 1 4.7673 -0.1781 6.3471 16 6 6.8889 -0.3433 6.1799 17 7 7.9229 -0.3278 5.3674 18 14 7.1445 -0.6042 8.0118 19 1 5.8306 -0.5788 8.7035 20 1 7.7972 -1.9187 8.2383 21 1 8.0087 0.4768 8.5501 22 6 4.1088 0.6591 -1.2920 23 6 5.6367 0.7386 -1.2923 24 6 6.0713 2.2029 -1.2036 25 6 5.5288 2.8186 0.0877 26 6 4.0008 2.7391 0.0880 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 5.2064 0.5605 1.1998 31 1 3.8060 -0.5366 1.1405 32 1 3.3280 -0.2944 4.4404 33 1 5.4095 -2.0614 3.7516 34 1 5.7949 -1.0133 2.3656 35 1 7.0079 -1.2858 3.6391 36 1 8.8182 -0.4531 5.7192 37 1 3.7996 -0.3842 -1.3548 38 1 3.7160 1.2068 -2.1485 39 1 6.0231 0.3004 -2.2124 40 1 6.0292 0.1907 -0.4357 41 1 5.6787 2.7509 -2.0602 42 1 7.1598 2.2596 -1.2043 43 1 5.8380 3.8619 0.1506 44 1 5.9212 2.2707 0.9443 45 1 3.6083 3.2870 -0.7686 46 1 3.6144 3.1774 1.0082 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000489273336.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:53 Heat of formation + Delta-G solvation = -175.177503 kcal Electronic energy + Delta-G solvation = -29597.960269 eV Core-core repulsion = 25614.372947 eV Total energy + Delta-G solvation = -3983.587322 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.05386 -38.70935 -36.62026 -36.40390 -35.55866 -35.40604 -32.70147 -32.23169 -30.95665 -28.38182 -27.80568 -27.52233 -25.26804 -23.79872 -22.83334 -21.01517 -20.90159 -19.36942 -18.51754 -17.73228 -17.46413 -17.03662 -16.53221 -16.15919 -15.63470 -15.39779 -14.94594 -14.77523 -14.48543 -14.20186 -13.82884 -13.61553 -13.24692 -13.04298 -12.81928 -12.69414 -12.42798 -12.29562 -12.21746 -12.06674 -11.78493 -11.67264 -11.56334 -11.51660 -11.21265 -11.18049 -11.02581 -10.84591 -10.74166 -10.67045 -10.53537 -10.40820 -10.36559 -10.17988 -10.12790 -9.96257 -9.24661 -8.66490 -8.32710 -6.16915 -4.23181 0.73016 2.12248 2.61314 3.23757 3.31104 3.33412 3.39530 4.05401 4.22627 4.33907 4.39772 4.51655 4.68172 4.77901 4.97732 5.06018 5.08720 5.11997 5.16321 5.25471 5.26587 5.35017 5.40164 5.49046 5.57548 5.65418 5.69575 5.84650 5.92618 6.02699 6.06027 6.15601 6.20234 6.26287 6.39030 6.43489 6.65378 6.69846 6.90559 7.50603 7.60268 7.68779 7.82337 7.95579 8.21927 8.79695 9.42941 10.89618 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.015689 B = 0.004424 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.243288 B = 6327.811809 C = 7180.610145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.349 6.349 3 C 0.458 3.542 4 O -0.491 6.491 5 C -0.027 4.027 6 C -0.639 4.639 7 S 2.599 3.401 8 O -0.973 6.973 9 O -0.948 6.948 10 N -1.100 6.100 11 C 0.263 3.737 12 H 0.051 0.949 13 C -0.164 4.164 14 C -0.518 4.518 15 H 0.065 0.935 16 C 0.064 3.936 17 N -0.889 5.889 18 Si 0.901 3.099 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.282 1.282 22 C -0.097 4.097 23 C -0.123 4.123 24 C -0.123 4.123 25 C -0.122 4.122 26 C -0.125 4.125 27 H 0.100 0.900 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.154 0.846 31 H 0.144 0.856 32 H 0.408 0.592 33 H 0.037 0.963 34 H 0.012 0.988 35 H 0.096 0.904 36 H 0.264 0.736 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.086 0.914 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.273 -0.737 -15.296 16.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.265 6.265 3 C 0.300 3.700 4 O -0.377 6.377 5 C -0.030 4.030 6 C -0.765 4.765 7 S 2.690 3.310 8 O -0.963 6.963 9 O -0.938 6.938 10 N -0.861 5.861 11 C 0.159 3.841 12 H 0.069 0.931 13 C -0.223 4.223 14 C -0.558 4.558 15 H 0.083 0.917 16 C -0.139 4.139 17 N -0.528 5.528 18 Si 0.729 3.271 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.208 1.208 22 C -0.135 4.135 23 C -0.160 4.160 24 C -0.160 4.160 25 C -0.159 4.159 26 C -0.163 4.163 27 H 0.119 0.881 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.172 0.828 31 H 0.162 0.838 32 H 0.242 0.758 33 H 0.056 0.944 34 H 0.031 0.969 35 H 0.115 0.885 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.105 0.895 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.671 0.438 -15.282 16.680 hybrid contribution 0.067 -0.982 0.887 1.325 sum -6.604 -0.544 -14.395 15.846 Atomic orbital electron populations 1.23305 0.76124 1.03658 1.02822 1.86426 1.23643 1.32744 1.83644 1.23586 0.91488 0.82011 0.72959 1.90658 1.66732 1.36230 1.44100 1.20236 0.86749 0.98344 0.97669 1.31146 1.14703 1.12978 1.17671 1.05155 0.74123 0.75631 0.76130 1.93547 1.29150 1.87300 1.86338 1.93597 1.76154 1.41982 1.82069 1.55566 1.17337 1.63767 1.49381 1.18663 0.73605 0.95008 0.96815 0.93098 1.22404 1.05306 0.99375 0.95261 1.21240 0.93123 1.50045 0.91409 0.91682 1.24908 0.95756 0.94804 0.98430 1.69852 0.98787 1.49616 1.34527 0.86385 0.78353 0.77754 0.84613 1.19670 1.20911 1.20806 1.21520 0.96842 1.01386 0.93788 1.21623 0.94183 0.97409 1.02833 1.21610 1.00904 0.95606 0.97906 1.21600 0.93426 1.02354 0.98505 1.21867 0.97742 0.91833 1.04818 0.88142 0.90974 0.92218 0.82775 0.83772 0.75785 0.94384 0.96920 0.88510 0.92608 0.90191 0.90977 0.91183 0.90698 0.91886 0.91290 0.90491 0.90611 0.89539 0.90227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 101.05 1.07 1.46 16 2 O -0.35 -4.96 10.33 -39.26 -0.41 -5.36 16 3 C 0.46 7.22 4.47 36.00 0.16 7.38 16 4 O -0.49 -8.83 15.73 -18.75 -0.29 -9.12 16 5 C -0.03 -0.38 0.49 -155.66 -0.08 -0.46 16 6 C -0.64 -9.41 3.18 37.16 0.12 -9.29 16 7 S 2.60 49.79 4.52 -107.50 -0.49 49.30 16 8 O -0.97 -20.04 16.36 -57.54 -0.94 -20.98 16 9 O -0.95 -20.86 15.59 -57.54 -0.90 -21.76 16 10 N -1.10 -22.31 5.35 -5.88 -0.03 -22.35 16 11 C 0.26 6.15 2.80 -69.08 -0.19 5.96 16 12 H 0.05 1.30 7.48 -51.93 -0.39 0.91 16 13 C -0.16 -3.46 9.26 37.16 0.34 -3.12 16 14 C -0.52 -13.54 8.76 -34.44 -0.30 -13.84 16 15 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 16 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 17 N -0.89 -23.73 11.32 55.43 0.63 -23.10 16 18 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 22 C -0.10 -1.03 4.70 -26.73 -0.13 -1.15 16 23 C -0.12 -1.20 5.65 -26.73 -0.15 -1.35 16 24 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16 25 C -0.12 -1.55 5.65 -26.73 -0.15 -1.70 16 26 C -0.13 -1.78 3.59 -26.73 -0.10 -1.88 16 27 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 29 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 30 H 0.15 2.13 3.92 -51.92 -0.20 1.93 16 31 H 0.14 1.84 8.05 -51.93 -0.42 1.42 16 32 H 0.41 7.73 8.79 -34.47 -0.30 7.43 16 33 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.01 0.21 6.02 -51.93 -0.31 -0.10 16 35 H 0.10 2.27 6.07 -51.93 -0.32 1.96 16 36 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.78 6.42 -51.93 -0.33 0.45 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.08 1.08 6.43 -51.93 -0.33 0.74 16 45 H 0.09 1.10 8.06 -51.93 -0.42 0.68 16 46 H 0.08 1.33 5.79 -51.93 -0.30 1.03 16 LS Contribution 364.93 15.07 5.50 5.50 Total: -1.00 -32.12 364.93 -8.71 -40.83 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -7.10 Total: 9.37 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: 0.34 Total: -17.80 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: 0.60 Total: -45.45 kcal Atomic # 8 Polarization: -54.68 SS G_CDS: -2.54 Total: -57.22 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: 49.79 SS G_CDS: -0.49 Total: 49.30 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.12 -8.71 -40.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489273336.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.349 kcal (2) G-P(sol) polarization free energy of solvation -32.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds