Wall clock time and date at job start Tue Mar 31 2020 18:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34225 * 116.99953 * 2 1 4 4 O 1.20826 * 120.00286 * 359.97438 * 3 2 1 5 5 C 1.50708 * 119.99931 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47290 * 180.02562 * 5 3 2 7 7 H 1.09004 * 109.47033 * 305.00232 * 6 5 3 8 8 C 1.52994 * 109.47497 * 185.00007 * 6 5 3 9 9 N 1.46503 * 109.47173 * 64.99614 * 6 5 3 10 10 C 1.34773 * 120.00007 * 205.00368 * 9 6 5 11 11 O 1.21724 * 120.00079 * 0.02562 * 10 9 6 12 12 C 1.46262 * 120.00135 * 180.02562 * 10 9 6 13 13 C 1.35015 * 120.00074 * 173.21438 * 12 10 9 14 14 C 1.46958 * 120.00145 * 348.67606 * 13 12 10 15 15 C 1.40025 * 120.10387 * 316.41377 * 14 13 12 16 16 C 1.37600 * 119.89571 * 179.69160 * 15 14 13 17 17 C 1.39171 * 120.10134 * 0.60290 * 16 15 14 18 18 O 1.35574 * 119.90024 * 179.69803 * 17 16 15 19 19 C 1.34780 * 117.00383 * 174.33364 * 18 17 16 20 20 H 1.07997 * 119.99744 * 5.05862 * 19 18 17 21 21 C 1.38721 * 120.00065 * 185.05911 * 19 18 17 22 22 N 1.31506 * 119.99771 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00034 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47115 * 89.99855 * 23 21 19 25 25 H 1.48503 * 109.47137 * 210.00112 * 23 21 19 26 26 H 1.48504 * 109.46787 * 330.00128 * 23 21 19 27 27 C 1.39178 * 120.20378 * 359.66802 * 17 16 15 28 28 C 1.37594 * 120.10477 * 0.02611 * 27 17 16 29 29 H 1.08997 * 109.46821 * 60.00363 * 1 2 3 30 30 H 1.09005 * 109.46960 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46789 * 299.99872 * 1 2 3 32 32 H 1.08992 * 109.46971 * 59.99736 * 5 3 2 33 33 H 1.09002 * 109.46806 * 300.00147 * 5 3 2 34 34 H 1.08995 * 109.47251 * 180.02562 * 8 6 5 35 35 H 1.09010 * 109.46802 * 299.99871 * 8 6 5 36 36 H 1.08996 * 109.47255 * 59.99529 * 8 6 5 37 37 H 0.97003 * 119.99753 * 24.99986 * 9 6 5 38 38 H 1.08005 * 119.99599 * 353.20872 * 12 10 9 39 39 H 1.08002 * 120.00315 * 168.68674 * 13 12 10 40 40 H 1.07999 * 120.04739 * 359.97438 * 15 14 13 41 41 H 1.08002 * 119.94979 * 180.26738 * 16 15 14 42 42 H 0.97007 * 119.99507 * 179.97438 * 22 21 19 43 43 H 1.08003 * 119.94675 * 180.02562 * 27 17 16 44 44 H 1.07998 * 120.05357 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0002 2.7420 0.0002 7 1 3.5376 3.2581 -0.8411 8 6 5.5228 2.8238 -0.1261 9 7 3.5794 3.3750 1.2526 10 6 3.3826 4.7074 1.3012 11 8 3.5540 5.3848 0.3045 12 6 2.9630 5.3395 2.5517 13 6 2.8981 6.6853 2.6393 14 6 3.4795 7.5196 1.5783 15 6 4.7359 7.2047 1.0463 16 6 5.2733 7.9851 0.0485 17 6 4.5758 9.0932 -0.4231 18 8 5.1120 9.8628 -1.4020 19 6 4.3390 10.8498 -1.8968 20 1 3.3732 11.0511 -1.4574 21 6 4.7840 11.6072 -2.9705 22 7 4.0296 12.5699 -3.4536 23 14 6.4548 11.2594 -3.7301 24 1 6.3058 10.2589 -4.8173 25 1 7.0165 12.5161 -4.2873 26 1 7.3705 10.7268 -2.6893 27 6 3.3292 9.4133 0.1066 28 6 2.7810 8.6351 1.1002 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.9557 0.7809 -0.8907 33 1 3.9564 0.7805 0.8892 34 1 5.8318 3.8690 -0.1251 35 1 5.9854 2.3076 0.7153 36 1 5.8359 2.3528 -1.0579 37 1 3.4424 2.8352 2.0467 38 1 2.7049 4.7297 3.4049 39 1 2.4192 7.1487 3.4891 40 1 5.2801 6.3479 1.4153 41 1 6.2404 7.7405 -0.3654 42 1 4.3410 13.0997 -4.2042 43 1 2.7914 10.2740 -0.2628 44 1 1.8135 8.8841 1.5103 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490703997.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:41 Heat of formation + Delta-G solvation = -118.126569 kcal Electronic energy + Delta-G solvation = -28036.669990 eV Core-core repulsion = 23920.112631 eV Total energy + Delta-G solvation = -4116.557359 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.66433 -41.07337 -40.43248 -38.48208 -37.68220 -36.57568 -34.64401 -34.09857 -32.71957 -31.85769 -30.08486 -29.54862 -27.87249 -27.34275 -24.95633 -23.63470 -23.11058 -22.29164 -21.41869 -20.53564 -19.69880 -19.13546 -18.62219 -18.24907 -17.73324 -17.45502 -16.90666 -16.61041 -16.18421 -15.87961 -15.67999 -15.58078 -15.13599 -14.93603 -14.63019 -14.49199 -14.36422 -14.27061 -14.11132 -13.97583 -13.80146 -13.35505 -13.08803 -13.04182 -12.94959 -12.84369 -12.63548 -12.49173 -12.28754 -12.00904 -11.95627 -11.79960 -11.52434 -11.34337 -11.02833 -10.64985 -10.43579 -10.00733 -9.58030 -8.60528 -8.52619 -6.23677 -0.02203 0.68293 1.09948 1.19932 1.27683 1.34650 1.49589 1.75258 2.26359 2.37011 2.56444 2.79308 3.04019 3.22829 3.55699 3.81343 3.98595 4.05499 4.13050 4.16618 4.17676 4.28787 4.30977 4.39137 4.53118 4.55726 4.59151 4.67327 4.70785 4.77115 4.83076 4.93335 5.06794 5.18027 5.22280 5.34069 5.39556 5.42826 5.44772 5.64879 5.67511 5.77421 5.82783 5.89784 6.26058 6.73576 6.76550 6.81406 7.52303 7.57133 8.59176 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.015049 B = 0.002605 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.189600 B =10744.977391 C =11261.308429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.362 6.362 3 C 0.452 3.548 4 O -0.536 6.536 5 C -0.110 4.110 6 C 0.151 3.849 7 H 0.052 0.948 8 C -0.155 4.155 9 N -0.707 5.707 10 C 0.531 3.469 11 O -0.567 6.567 12 C -0.227 4.227 13 C -0.003 4.003 14 C -0.149 4.149 15 C 0.014 3.986 16 C -0.207 4.207 17 C 0.133 3.867 18 O -0.243 6.243 19 C -0.401 4.401 20 H 0.080 0.920 21 C 0.010 3.990 22 N -0.922 5.922 23 Si 0.972 3.028 24 H -0.268 1.268 25 H -0.262 1.262 26 H -0.264 1.264 27 C -0.253 4.253 28 C -0.056 4.056 29 H 0.051 0.949 30 H 0.132 0.868 31 H 0.060 0.940 32 H 0.147 0.853 33 H 0.150 0.850 34 H 0.036 0.964 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.410 0.590 38 H 0.170 0.830 39 H 0.165 0.835 40 H 0.128 0.872 41 H 0.119 0.881 42 H 0.286 0.714 43 H 0.108 0.892 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.158 -30.910 14.745 34.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.279 6.279 3 C 0.296 3.704 4 O -0.425 6.425 5 C -0.148 4.148 6 C 0.046 3.954 7 H 0.071 0.929 8 C -0.213 4.213 9 N -0.360 5.360 10 C 0.321 3.679 11 O -0.447 6.447 12 C -0.247 4.247 13 C -0.023 4.023 14 C -0.150 4.150 15 C -0.004 4.004 16 C -0.227 4.227 17 C 0.083 3.917 18 O -0.151 6.151 19 C -0.478 4.478 20 H 0.098 0.902 21 C -0.188 4.188 22 N -0.562 5.562 23 Si 0.793 3.207 24 H -0.193 1.193 25 H -0.186 1.186 26 H -0.188 1.188 27 C -0.273 4.273 28 C -0.074 4.074 29 H 0.070 0.930 30 H 0.150 0.850 31 H 0.079 0.921 32 H 0.164 0.836 33 H 0.168 0.832 34 H 0.055 0.945 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.247 0.753 38 H 0.187 0.813 39 H 0.182 0.818 40 H 0.145 0.855 41 H 0.137 0.863 42 H 0.095 0.905 43 H 0.126 0.874 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.081 -30.015 13.764 33.038 hybrid contribution -0.387 0.567 -0.618 0.924 sum -1.469 -29.448 13.146 32.282 Atomic orbital electron populations 1.23465 0.75359 1.05469 1.02069 1.86495 1.24473 1.32991 1.83917 1.24393 0.93342 0.81025 0.71630 1.90777 1.68148 1.37550 1.46017 1.21855 0.85819 0.97177 1.09912 1.20681 0.95730 0.91383 0.87620 0.92923 1.22102 0.93092 1.02022 1.04115 1.45780 1.69415 1.07379 1.13377 1.18927 0.76562 0.82569 0.89804 1.90977 1.52151 1.63120 1.38465 1.23092 1.08526 0.95578 0.97515 1.22545 0.91129 0.92968 0.95611 1.18914 0.96178 0.97772 1.02142 1.20728 0.93934 0.93968 0.91759 1.20242 1.02244 0.96581 1.03598 1.19740 0.92728 0.90695 0.88511 1.83444 1.41895 1.41611 1.48113 1.20753 1.01643 1.09730 1.15631 0.90246 1.25311 1.03175 0.94645 0.95718 1.69710 1.39279 1.21041 1.26208 0.85216 0.78321 0.78383 0.78744 1.19264 1.18588 1.18788 1.21097 0.97865 1.04446 1.03852 1.21141 0.98926 0.92878 0.94465 0.92983 0.85009 0.92133 0.83561 0.83249 0.94492 0.89472 0.89893 0.75312 0.81302 0.81760 0.85450 0.86283 0.90465 0.87427 0.84309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 113.37 1.20 1.53 16 2 O -0.36 -5.12 10.57 -51.36 -0.54 -5.67 16 3 C 0.45 7.63 7.82 71.24 0.56 8.18 16 4 O -0.54 -14.17 15.10 21.96 0.33 -13.84 16 5 C -0.11 -1.01 5.35 29.85 0.16 -0.85 16 6 C 0.15 2.67 2.14 44.99 0.10 2.77 16 7 H 0.05 1.45 7.39 -2.38 -0.02 1.44 16 8 C -0.16 -2.31 9.48 71.98 0.68 -1.63 16 9 N -0.71 -13.03 4.22 -446.91 -1.88 -14.91 16 10 C 0.53 14.36 6.74 86.33 0.58 14.94 16 11 O -0.57 -21.71 11.84 -4.43 -0.05 -21.77 16 12 C -0.23 -4.74 9.90 23.61 0.23 -4.50 16 13 C 0.00 -0.08 9.80 23.81 0.23 0.16 16 14 C -0.15 -5.29 4.54 -20.12 -0.09 -5.38 16 15 C 0.01 0.54 6.59 22.55 0.15 0.69 16 16 C -0.21 -9.39 9.97 22.34 0.22 -9.17 16 17 C 0.13 7.01 6.66 22.72 0.15 7.16 16 18 O -0.24 -14.45 8.57 -20.29 -0.17 -14.62 16 19 C -0.40 -25.33 9.94 67.94 0.68 -24.66 16 20 H 0.08 5.25 5.41 -2.91 -0.02 5.24 16 21 C 0.01 0.61 5.49 84.86 0.47 1.07 16 22 N -0.92 -57.45 13.96 21.62 0.30 -57.15 16 23 Si 0.97 47.97 28.62 68.60 1.96 49.94 16 24 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 25 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 26 H -0.26 -13.03 7.11 99.48 0.71 -12.33 16 27 C -0.25 -12.57 9.14 22.34 0.20 -12.37 16 28 C -0.06 -2.24 9.78 22.55 0.22 -2.02 16 29 H 0.05 0.71 8.13 -2.39 -0.02 0.69 16 30 H 0.13 0.60 8.14 -2.38 -0.02 0.59 16 31 H 0.06 0.72 8.13 -2.39 -0.02 0.70 16 32 H 0.15 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.15 0.26 8.14 -2.39 -0.02 0.24 16 34 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 36 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.41 4.47 8.58 -92.71 -0.80 3.67 16 38 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 39 H 0.17 2.71 8.06 -2.91 -0.02 2.68 16 40 H 0.13 4.16 7.02 -2.91 -0.02 4.14 16 41 H 0.12 5.08 8.06 -2.91 -0.02 5.06 16 42 H 0.29 16.24 8.31 -92.70 -0.77 15.47 16 43 H 0.11 5.75 5.62 -2.91 -0.02 5.73 16 44 H 0.14 4.57 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -88.29 377.80 5.92 -82.37 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.24 Total: 19.71 kcal Atomic # 6 Polarization: -29.80 SS G_CDS: 5.74 Total: -24.06 kcal Atomic # 7 Polarization: -70.48 SS G_CDS: -1.58 Total: -72.06 kcal Atomic # 8 Polarization: -55.45 SS G_CDS: -0.44 Total: -55.89 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 1.96 Total: 49.94 kcal Total: -88.29 5.92 -82.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490703997.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.758 kcal (2) G-P(sol) polarization free energy of solvation -88.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds