Wall clock time and date at job start Tue Mar 31 2020 18:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34223 * 116.99965 * 2 1 4 4 O 1.20826 * 120.00098 * 0.02562 * 3 2 1 5 5 C 1.50705 * 120.00243 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.47090 * 300.00621 * 5 3 2 7 7 C 1.53001 * 109.46728 * 59.99724 * 5 3 2 8 8 C 1.52995 * 109.47493 * 179.97438 * 5 3 2 9 9 N 1.46500 * 109.47101 * 174.99843 * 8 5 3 10 10 C 1.34780 * 120.00085 * 180.02562 * 9 8 5 11 11 O 1.21727 * 119.99701 * 0.02562 * 10 9 8 12 12 C 1.46250 * 120.00001 * 180.27770 * 10 9 8 13 13 C 1.35025 * 119.99872 * 172.93753 * 12 10 9 14 14 C 1.46960 * 119.99925 * 348.68575 * 13 12 10 15 15 C 1.40028 * 120.10009 * 316.40557 * 14 13 12 16 16 C 1.37594 * 119.89430 * 179.72348 * 15 14 13 17 17 C 1.39178 * 120.10545 * 0.57472 * 16 15 14 18 18 O 1.35570 * 119.89974 * 179.70498 * 17 16 15 19 19 C 1.34784 * 116.99709 * 174.33776 * 18 17 16 20 20 H 1.08003 * 120.00118 * 5.06382 * 19 18 17 21 21 C 1.38719 * 120.00009 * 185.05536 * 19 18 17 22 22 N 1.31512 * 119.99551 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00225 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47071 * 60.00202 * 23 21 19 25 25 H 1.48498 * 109.47062 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.46892 * 300.00176 * 23 21 19 27 27 C 1.39179 * 120.19889 * 359.67528 * 17 16 15 28 28 C 1.37596 * 120.10342 * 0.04860 * 27 17 16 29 29 H 1.09006 * 109.47222 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47252 * 299.99502 * 1 2 3 31 31 H 1.08994 * 109.47592 * 60.00110 * 1 2 3 32 32 H 1.09001 * 109.47702 * 300.00460 * 7 5 3 33 33 H 1.09004 * 109.46997 * 60.00851 * 7 5 3 34 34 H 1.09004 * 109.46836 * 180.02562 * 7 5 3 35 35 H 1.09004 * 109.47004 * 55.00109 * 8 5 3 36 36 H 1.08994 * 109.47448 * 295.00315 * 8 5 3 37 37 H 0.96995 * 120.00304 * 0.02562 * 9 8 5 38 38 H 1.07994 * 119.99828 * 352.93725 * 12 10 9 39 39 H 1.07997 * 120.00191 * 168.68458 * 13 12 10 40 40 H 1.08001 * 120.04804 * 359.97438 * 15 14 13 41 41 H 1.08010 * 119.94843 * 180.27620 * 16 15 14 42 42 H 0.97006 * 119.99836 * 179.97438 * 22 21 19 43 43 H 1.08002 * 119.94590 * 180.02562 * 27 17 16 44 44 H 1.07995 * 120.05096 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9564 0.7805 0.8891 7 6 4.1128 0.5815 -1.2502 8 6 4.0001 2.7420 -0.0011 9 7 5.4581 2.8202 0.1187 10 6 6.0691 4.0214 0.1402 11 8 5.4094 5.0413 0.0605 12 6 7.5251 4.0992 0.2538 13 6 8.1490 5.2905 0.1322 14 6 7.4079 6.4616 -0.3568 15 6 6.5442 6.3389 -1.4522 16 6 5.8481 7.4368 -1.9029 17 6 6.0104 8.6705 -1.2796 18 8 5.3270 9.7509 -1.7309 19 6 5.4366 10.8873 -1.0146 20 1 6.1115 10.9319 -0.1725 21 6 4.6827 11.9997 -1.3589 22 7 3.8607 11.9452 -2.3840 23 14 4.8351 13.5749 -0.3666 24 1 6.2373 14.0609 -0.4216 25 1 3.9305 14.6069 -0.9340 26 1 4.4584 13.3091 1.0450 27 6 6.8717 8.7984 -0.1938 28 6 7.5677 7.7047 0.2675 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 3.8037 -0.4638 -1.2503 33 1 3.7228 1.0759 -2.1399 34 1 5.2014 0.6382 -1.2504 35 1 3.5382 3.2578 0.8408 36 1 3.6863 3.2134 -0.9324 37 1 5.9838 2.0076 0.1827 38 1 8.1012 3.2039 0.4348 39 1 9.1926 5.3828 0.3944 40 1 6.4216 5.3830 -1.9398 41 1 5.1782 7.3421 -2.7449 42 1 3.3332 12.7229 -2.6246 43 1 6.9943 9.7576 0.2871 44 1 8.2355 7.8048 1.1103 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491402051.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:20 Heat of formation + Delta-G solvation = -96.234201 kcal Electronic energy + Delta-G solvation = -27473.582260 eV Core-core repulsion = 23357.974226 eV Total energy + Delta-G solvation = -4115.608035 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.95956 -39.72358 -38.69937 -37.16034 -36.54224 -35.67077 -33.03631 -32.75019 -32.06563 -30.08560 -28.40476 -28.02650 -26.82851 -25.39506 -24.25965 -22.61476 -21.74208 -20.93235 -20.66804 -19.30355 -17.96083 -17.90153 -17.33893 -16.97784 -16.69818 -16.38143 -15.65424 -15.34765 -14.77046 -14.55630 -14.27327 -14.19872 -14.07655 -13.60970 -13.49032 -13.36158 -13.16523 -13.10311 -12.82823 -12.75140 -12.49098 -12.36143 -12.14328 -11.74300 -11.66551 -11.51505 -11.33292 -11.15201 -10.96311 -10.70662 -10.66306 -10.61436 -10.39030 -9.49676 -9.39679 -9.13814 -8.99755 -8.66458 -7.89068 -6.83328 -6.42521 -3.98245 1.26045 1.85603 2.21875 2.45986 2.73255 3.15704 3.18812 3.20078 3.39564 3.65213 4.00074 4.11139 4.40233 4.46010 4.72843 4.74525 4.77407 4.84587 5.07014 5.14221 5.16661 5.24190 5.27822 5.30661 5.39161 5.53878 5.60341 5.71689 5.76149 5.83680 5.87801 6.01522 6.28038 6.34986 6.42424 6.48620 6.62724 6.82045 7.06866 7.15312 7.38467 7.39421 7.47712 7.53886 7.64001 7.95659 8.04066 8.54450 9.02929 9.75116 10.75299 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012796 B = 0.002443 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.735009 B =11457.099196 C =13099.111321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.466 3.534 4 O -0.494 6.494 5 C -0.094 4.094 6 H 0.115 0.885 7 C -0.146 4.146 8 C 0.135 3.865 9 N -0.737 5.737 10 C 0.539 3.461 11 O -0.506 6.506 12 C -0.268 4.268 13 C 0.030 3.970 14 C -0.192 4.192 15 C 0.012 3.988 16 C -0.202 4.202 17 C 0.171 3.829 18 O -0.172 6.172 19 C -0.390 4.390 20 H 0.093 0.907 21 C 0.039 3.961 22 N -0.860 5.860 23 Si 0.942 3.058 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.269 1.269 27 C -0.251 4.251 28 C -0.041 4.041 29 H 0.102 0.898 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.395 0.605 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.101 0.899 41 H 0.114 0.886 42 H 0.271 0.729 43 H 0.126 0.874 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.705 -25.944 5.313 26.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.276 6.276 3 C 0.308 3.692 4 O -0.380 6.380 5 C -0.113 4.113 6 H 0.133 0.867 7 C -0.203 4.203 8 C 0.011 3.989 9 N -0.392 5.392 10 C 0.329 3.671 11 O -0.381 6.381 12 C -0.289 4.289 13 C 0.010 3.990 14 C -0.192 4.192 15 C -0.006 4.006 16 C -0.222 4.222 17 C 0.117 3.883 18 O -0.074 6.074 19 C -0.466 4.466 20 H 0.111 0.889 21 C -0.166 4.166 22 N -0.494 5.494 23 Si 0.767 3.233 24 H -0.194 1.194 25 H -0.203 1.203 26 H -0.194 1.194 27 C -0.270 4.270 28 C -0.059 4.059 29 H 0.120 0.880 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.229 0.771 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.119 0.881 41 H 0.132 0.868 42 H 0.081 0.919 43 H 0.143 0.857 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.626 -24.663 4.920 25.202 hybrid contribution 0.011 0.259 0.716 0.762 sum 1.637 -24.405 5.637 25.100 Atomic orbital electron populations 1.23300 0.76021 1.03744 1.02866 1.86472 1.23631 1.33272 1.84195 1.23467 0.91604 0.81522 0.72652 1.90759 1.66993 1.36177 1.44094 1.21194 0.88086 0.99059 1.02969 0.86706 1.21817 1.02030 1.00916 0.95556 1.21041 0.81097 0.92520 1.04218 1.45910 1.06801 1.08834 1.77615 1.18495 0.89025 0.82807 0.76806 1.91028 1.66643 1.33304 1.47166 1.22549 0.92952 0.98767 1.14635 1.22337 0.97807 0.91647 0.87214 1.18294 1.06217 0.92791 1.01943 1.20436 0.91144 0.95555 0.93498 1.20011 1.06322 0.90911 1.04910 1.19530 0.89869 0.87860 0.91083 1.83907 1.59587 1.16537 1.47413 1.21350 1.25534 0.87159 1.12573 0.88935 1.25328 0.95248 0.99049 0.96953 1.70019 1.23455 1.30792 1.25177 0.85765 0.78599 0.79682 0.79302 1.19450 1.20265 1.19450 1.20950 1.04254 0.99614 1.02206 1.20737 0.96800 0.91418 0.96991 0.87995 0.91748 0.91688 0.90907 0.91540 0.90671 0.90468 0.90391 0.77117 0.86111 0.86051 0.88093 0.86842 0.91911 0.85661 0.87611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 101.05 1.07 1.29 16 2 O -0.36 -3.10 10.47 -39.24 -0.41 -3.51 16 3 C 0.47 4.80 7.26 36.01 0.26 5.06 16 4 O -0.49 -7.00 15.67 -18.75 -0.29 -7.29 16 5 C -0.09 -0.72 2.87 -91.77 -0.26 -0.99 16 6 H 0.12 0.62 8.14 -51.93 -0.42 0.20 16 7 C -0.15 -0.86 9.00 37.16 0.33 -0.52 16 8 C 0.14 1.53 4.41 -4.04 -0.02 1.51 16 9 N -0.74 -7.63 5.28 -61.76 -0.33 -7.95 16 10 C 0.54 7.83 6.77 -13.04 -0.09 7.75 16 11 O -0.51 -10.07 12.18 5.16 0.06 -10.00 16 12 C -0.27 -3.26 9.90 -37.51 -0.37 -3.63 16 13 C 0.03 0.41 9.80 -37.19 -0.36 0.05 16 14 C -0.19 -3.57 4.54 -105.02 -0.48 -4.05 16 15 C 0.01 0.25 6.59 -39.15 -0.26 -0.01 16 16 C -0.20 -4.75 9.97 -39.47 -0.39 -5.15 16 17 C 0.17 4.45 6.66 -38.88 -0.26 4.20 16 18 O -0.17 -5.16 9.74 0.73 0.01 -5.15 16 19 C -0.39 -11.30 9.48 30.91 0.29 -11.01 16 20 H 0.09 2.48 5.18 -52.48 -0.27 2.21 16 21 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 22 N -0.86 -25.93 13.67 55.48 0.76 -25.17 16 23 Si 0.94 21.08 29.55 -169.99 -5.02 16.06 16 24 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 25 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 26 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 27 C -0.25 -5.83 9.14 -39.47 -0.36 -6.19 16 28 C -0.04 -0.81 9.78 -39.15 -0.38 -1.19 16 29 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.44 8.13 -51.93 -0.42 0.01 16 31 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 32 H 0.07 0.35 8.11 -51.93 -0.42 -0.07 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.34 7.18 -51.93 -0.37 -0.04 16 35 H 0.08 1.06 7.96 -51.93 -0.41 0.64 16 36 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.39 2.57 7.63 -40.82 -0.31 2.26 16 38 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 40 H 0.10 1.86 7.02 -52.49 -0.37 1.49 16 41 H 0.11 2.61 8.06 -52.48 -0.42 2.19 16 42 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.13 2.87 5.62 -52.49 -0.29 2.58 16 44 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 378.19 15.07 5.70 5.70 Total: -1.00 -36.99 378.19 -6.72 -43.71 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -5.82 Total: 5.50 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -1.38 Total: -11.88 kcal Atomic # 7 Polarization: -33.55 SS G_CDS: 0.43 Total: -33.12 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.63 Total: -25.96 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.99 -6.72 -43.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491402051.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.524 kcal (2) G-P(sol) polarization free energy of solvation -36.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds