Wall clock time and date at job start Tue Mar 31 2020 18:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34223 * 116.99965 * 2 1 4 4 O 1.20826 * 120.00098 * 0.02562 * 3 2 1 5 5 C 1.50705 * 120.00243 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.47090 * 300.00621 * 5 3 2 7 7 C 1.53001 * 109.46728 * 59.99724 * 5 3 2 8 8 C 1.52995 * 109.47493 * 179.97438 * 5 3 2 9 9 N 1.46500 * 109.47101 * 174.99843 * 8 5 3 10 10 C 1.34780 * 120.00085 * 180.02562 * 9 8 5 11 11 O 1.21727 * 119.99701 * 0.02562 * 10 9 8 12 12 C 1.46250 * 120.00001 * 180.27770 * 10 9 8 13 13 C 1.35025 * 119.99872 * 172.93753 * 12 10 9 14 14 C 1.46960 * 119.99925 * 348.68575 * 13 12 10 15 15 C 1.40028 * 120.10009 * 316.40557 * 14 13 12 16 16 C 1.37594 * 119.89430 * 179.72348 * 15 14 13 17 17 C 1.39178 * 120.10545 * 0.57472 * 16 15 14 18 18 O 1.35570 * 119.89974 * 179.70498 * 17 16 15 19 19 C 1.34784 * 116.99709 * 174.33776 * 18 17 16 20 20 H 1.08003 * 120.00118 * 5.06382 * 19 18 17 21 21 C 1.38719 * 120.00009 * 185.05536 * 19 18 17 22 22 N 1.31512 * 119.99551 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00225 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47071 * 60.00202 * 23 21 19 25 25 H 1.48498 * 109.47062 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.46892 * 300.00176 * 23 21 19 27 27 C 1.39179 * 120.19889 * 359.67528 * 17 16 15 28 28 C 1.37596 * 120.10342 * 0.04860 * 27 17 16 29 29 H 1.09006 * 109.47222 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47252 * 299.99502 * 1 2 3 31 31 H 1.08994 * 109.47592 * 60.00110 * 1 2 3 32 32 H 1.09001 * 109.47702 * 300.00460 * 7 5 3 33 33 H 1.09004 * 109.46997 * 60.00851 * 7 5 3 34 34 H 1.09004 * 109.46836 * 180.02562 * 7 5 3 35 35 H 1.09004 * 109.47004 * 55.00109 * 8 5 3 36 36 H 1.08994 * 109.47448 * 295.00315 * 8 5 3 37 37 H 0.96995 * 120.00304 * 0.02562 * 9 8 5 38 38 H 1.07994 * 119.99828 * 352.93725 * 12 10 9 39 39 H 1.07997 * 120.00191 * 168.68458 * 13 12 10 40 40 H 1.08001 * 120.04804 * 359.97438 * 15 14 13 41 41 H 1.08010 * 119.94843 * 180.27620 * 16 15 14 42 42 H 0.97006 * 119.99836 * 179.97438 * 22 21 19 43 43 H 1.08002 * 119.94590 * 180.02562 * 27 17 16 44 44 H 1.07995 * 120.05096 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9564 0.7805 0.8891 7 6 4.1128 0.5815 -1.2502 8 6 4.0001 2.7420 -0.0011 9 7 5.4581 2.8202 0.1187 10 6 6.0691 4.0214 0.1402 11 8 5.4094 5.0413 0.0605 12 6 7.5251 4.0992 0.2538 13 6 8.1490 5.2905 0.1322 14 6 7.4079 6.4616 -0.3568 15 6 6.5442 6.3389 -1.4522 16 6 5.8481 7.4368 -1.9029 17 6 6.0104 8.6705 -1.2796 18 8 5.3270 9.7509 -1.7309 19 6 5.4366 10.8873 -1.0146 20 1 6.1115 10.9319 -0.1725 21 6 4.6827 11.9997 -1.3589 22 7 3.8607 11.9452 -2.3840 23 14 4.8351 13.5749 -0.3666 24 1 6.2373 14.0609 -0.4216 25 1 3.9305 14.6069 -0.9340 26 1 4.4584 13.3091 1.0450 27 6 6.8717 8.7984 -0.1938 28 6 7.5677 7.7047 0.2675 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 3.8037 -0.4638 -1.2503 33 1 3.7228 1.0759 -2.1399 34 1 5.2014 0.6382 -1.2504 35 1 3.5382 3.2578 0.8408 36 1 3.6863 3.2134 -0.9324 37 1 5.9838 2.0076 0.1827 38 1 8.1012 3.2039 0.4348 39 1 9.1926 5.3828 0.3944 40 1 6.4216 5.3830 -1.9398 41 1 5.1782 7.3421 -2.7449 42 1 3.3332 12.7229 -2.6246 43 1 6.9943 9.7576 0.2871 44 1 8.2355 7.8048 1.1103 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491402051.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:19 Heat of formation + Delta-G solvation = -122.836420 kcal Electronic energy + Delta-G solvation = -27474.735819 eV Core-core repulsion = 23357.974226 eV Total energy + Delta-G solvation = -4116.761594 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.79155 -41.07205 -40.37844 -38.36346 -37.78292 -36.76130 -34.59154 -33.98772 -33.58560 -31.81885 -29.79102 -28.74881 -27.81356 -27.30287 -25.19434 -23.91216 -23.43318 -22.35901 -21.49521 -20.53758 -19.76675 -18.91263 -18.76777 -18.18102 -17.73601 -17.28339 -16.72376 -16.44194 -16.33316 -16.26423 -15.73139 -15.55327 -15.40279 -14.94695 -14.68277 -14.57806 -14.39575 -14.21082 -14.14679 -13.79813 -13.70844 -13.56295 -13.38177 -13.01907 -12.94054 -12.63700 -12.49888 -12.37029 -12.23073 -12.17628 -12.13206 -11.86895 -11.53253 -11.24356 -10.96881 -10.69476 -10.38557 -10.07781 -9.57627 -8.55091 -8.48889 -6.16574 0.01157 0.71667 1.04694 1.13561 1.32131 1.46262 1.49801 1.50007 2.16714 2.45890 2.50080 2.86730 3.20581 3.34685 3.52846 3.75604 3.81431 4.02175 4.09072 4.13477 4.16266 4.18814 4.28005 4.28127 4.54704 4.57076 4.62806 4.67728 4.72002 4.77995 4.83948 4.94238 5.06292 5.09695 5.20915 5.26515 5.28682 5.30800 5.45574 5.48072 5.68523 5.72774 5.85908 6.01812 6.25946 6.59741 6.72005 6.94533 7.46389 7.77247 8.74185 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012796 B = 0.002443 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.735009 B =11457.099196 C =13099.111321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.353 6.353 3 C 0.465 3.535 4 O -0.545 6.545 5 C -0.081 4.081 6 H 0.152 0.848 7 C -0.142 4.142 8 C 0.139 3.861 9 N -0.708 5.708 10 C 0.524 3.476 11 O -0.570 6.570 12 C -0.225 4.225 13 C 0.004 3.996 14 C -0.161 4.161 15 C 0.014 3.986 16 C -0.224 4.224 17 C 0.125 3.875 18 O -0.232 6.232 19 C -0.416 4.416 20 H 0.103 0.897 21 C -0.026 4.026 22 N -0.923 5.923 23 Si 1.023 2.977 24 H -0.252 1.252 25 H -0.270 1.270 26 H -0.259 1.259 27 C -0.260 4.260 28 C -0.048 4.048 29 H 0.138 0.862 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.048 0.952 34 H 0.098 0.902 35 H 0.048 0.952 36 H 0.047 0.953 37 H 0.421 0.579 38 H 0.182 0.818 39 H 0.172 0.828 40 H 0.120 0.880 41 H 0.098 0.902 42 H 0.273 0.727 43 H 0.120 0.880 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.194 -30.388 7.919 32.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.269 6.269 3 C 0.309 3.691 4 O -0.435 6.435 5 C -0.100 4.100 6 H 0.169 0.831 7 C -0.199 4.199 8 C 0.014 3.986 9 N -0.363 5.363 10 C 0.315 3.685 11 O -0.450 6.450 12 C -0.245 4.245 13 C -0.015 4.015 14 C -0.161 4.161 15 C -0.004 4.004 16 C -0.243 4.243 17 C 0.074 3.926 18 O -0.139 6.139 19 C -0.492 4.492 20 H 0.120 0.880 21 C -0.223 4.223 22 N -0.561 5.561 23 Si 0.841 3.159 24 H -0.176 1.176 25 H -0.194 1.194 26 H -0.183 1.183 27 C -0.279 4.279 28 C -0.066 4.066 29 H 0.156 0.844 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.067 0.933 34 H 0.117 0.883 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.259 0.741 38 H 0.199 0.801 39 H 0.189 0.811 40 H 0.138 0.862 41 H 0.116 0.884 42 H 0.082 0.918 43 H 0.138 0.862 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 5.176 -29.259 7.545 30.656 hybrid contribution -1.000 1.002 0.005 1.415 sum 4.176 -28.257 7.550 29.545 Atomic orbital electron populations 1.23562 0.74922 1.05890 1.02278 1.86469 1.24735 1.32111 1.83542 1.24044 0.92671 0.81238 0.71152 1.90752 1.68250 1.37859 1.46594 1.21189 0.86375 0.96680 1.05738 0.83051 1.21855 1.03256 1.01364 0.93456 1.20844 0.81495 0.94873 1.01422 1.45631 1.06484 1.08952 1.75250 1.19236 0.90414 0.82884 0.75997 1.91041 1.68176 1.35740 1.50063 1.23053 0.91278 1.00260 1.09950 1.22598 0.99875 0.89700 0.89320 1.18922 1.03296 0.94550 0.99354 1.20685 0.90778 0.94878 0.94103 1.20196 1.07423 0.91652 1.05056 1.20026 0.91406 0.87929 0.93221 1.83876 1.62630 1.17821 1.49544 1.21865 1.26374 0.87706 1.13268 0.87973 1.26714 0.94497 1.02906 0.98182 1.70182 1.25697 1.32216 1.27964 0.84602 0.79449 0.74289 0.77538 1.17635 1.19426 1.18341 1.21104 1.04336 1.00937 1.01525 1.21205 0.96729 0.90670 0.97984 0.84435 0.92289 0.92471 0.89070 0.93295 0.88339 0.93398 0.93475 0.74057 0.80055 0.81073 0.86182 0.88402 0.91765 0.86218 0.83246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 113.37 1.20 1.52 16 2 O -0.35 -5.49 10.47 -51.35 -0.54 -6.03 16 3 C 0.47 9.27 7.26 71.24 0.52 9.78 16 4 O -0.54 -16.18 15.67 21.96 0.34 -15.84 16 5 C -0.08 -1.05 2.87 -11.54 -0.03 -1.08 16 6 H 0.15 0.92 8.14 -2.39 -0.02 0.90 16 7 C -0.14 -1.17 9.00 71.98 0.65 -0.53 16 8 C 0.14 3.02 4.41 86.38 0.38 3.41 16 9 N -0.71 -12.03 5.28 -467.50 -2.47 -14.50 16 10 C 0.52 13.42 6.77 86.32 0.58 14.00 16 11 O -0.57 -22.35 12.18 -4.44 -0.05 -22.40 16 12 C -0.23 -3.97 9.90 23.61 0.23 -3.73 16 13 C 0.00 0.09 9.80 23.82 0.23 0.33 16 14 C -0.16 -5.59 4.54 -20.13 -0.09 -5.68 16 15 C 0.01 0.56 6.59 22.55 0.15 0.71 16 16 C -0.22 -11.31 9.97 22.34 0.22 -11.09 16 17 C 0.12 7.01 6.66 22.72 0.15 7.16 16 18 O -0.23 -15.30 9.74 -20.29 -0.20 -15.50 16 19 C -0.42 -25.99 9.48 67.93 0.64 -25.35 16 20 H 0.10 5.84 5.18 -2.91 -0.02 5.83 16 21 C -0.03 -1.56 5.49 84.86 0.47 -1.09 16 22 N -0.92 -59.90 13.67 21.62 0.30 -59.61 16 23 Si 1.02 45.20 29.55 68.60 2.03 47.23 16 24 H -0.25 -10.30 7.11 99.48 0.71 -9.60 16 25 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 26 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 27 C -0.26 -12.53 9.14 22.34 0.20 -12.33 16 28 C -0.05 -1.81 9.78 22.55 0.22 -1.59 16 29 H 0.14 0.65 8.14 -2.38 -0.02 0.63 16 30 H 0.06 0.79 8.13 -2.39 -0.02 0.77 16 31 H 0.06 0.79 8.13 -2.39 -0.02 0.77 16 32 H 0.09 0.49 8.11 -2.39 -0.02 0.47 16 33 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.10 0.37 7.18 -2.39 -0.02 0.35 16 35 H 0.05 1.35 7.96 -2.39 -0.02 1.33 16 36 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.42 2.90 7.63 -92.71 -0.71 2.19 16 38 H 0.18 1.18 8.06 -2.91 -0.02 1.15 16 39 H 0.17 2.23 8.06 -2.91 -0.02 2.20 16 40 H 0.12 4.31 7.02 -2.91 -0.02 4.29 16 41 H 0.10 5.03 8.06 -2.91 -0.02 5.01 16 42 H 0.27 16.20 8.31 -92.70 -0.77 15.43 16 43 H 0.12 5.76 5.62 -2.91 -0.02 5.74 16 44 H 0.15 4.30 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -94.81 378.19 5.46 -89.35 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: 0.32 Total: 22.85 kcal Atomic # 6 Polarization: -31.28 SS G_CDS: 5.73 Total: -25.56 kcal Atomic # 7 Polarization: -71.93 SS G_CDS: -2.17 Total: -74.11 kcal Atomic # 8 Polarization: -59.32 SS G_CDS: -0.45 Total: -59.77 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -94.81 5.46 -89.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491402051.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.490 kcal (2) G-P(sol) polarization free energy of solvation -94.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds