Wall clock time and date at job start Tue Mar 31 2020 18:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34225 * 117.00248 * 2 1 4 4 O 1.20822 * 119.99711 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99815 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.47393 * 299.99420 * 5 3 2 7 7 C 1.52998 * 109.47267 * 60.00044 * 5 3 2 8 8 N 1.46508 * 109.47005 * 180.02562 * 5 3 2 9 9 C 1.46494 * 119.99723 * 300.00013 * 8 5 3 10 10 C 1.34776 * 119.99844 * 119.99569 * 8 5 3 11 11 O 1.21718 * 120.00237 * 0.02562 * 10 8 5 12 12 C 1.46256 * 119.99452 * 180.02562 * 10 8 5 13 13 C 1.35023 * 119.99725 * 173.05080 * 12 10 8 14 14 C 1.46965 * 119.99862 * 346.78822 * 13 12 10 15 15 C 1.40027 * 120.09767 * 135.37045 * 14 13 12 16 16 C 1.37597 * 119.89473 * 179.97438 * 15 14 13 17 17 C 1.39175 * 120.10303 * 0.24887 * 16 15 14 18 18 O 1.35569 * 119.89837 * 179.74408 * 17 16 15 19 19 C 1.34784 * 117.00161 * 7.21370 * 18 17 16 20 20 H 1.07994 * 119.99689 * 6.20467 * 19 18 17 21 21 C 1.38718 * 119.99753 * 186.20471 * 19 18 17 22 22 N 1.31504 * 120.00081 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99504 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47177 * 60.00094 * 23 21 19 25 25 H 1.48505 * 109.46834 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.46890 * 300.00118 * 23 21 19 27 27 C 1.39182 * 120.19900 * 359.49901 * 17 16 15 28 28 C 1.37593 * 120.10230 * 0.50237 * 27 17 16 29 29 H 1.09001 * 109.47163 * 60.00055 * 1 2 3 30 30 H 1.09000 * 109.47519 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47334 * 299.99740 * 1 2 3 32 32 H 1.08992 * 109.46967 * 299.99878 * 7 5 3 33 33 H 1.09000 * 109.47125 * 60.00116 * 7 5 3 34 34 H 1.09001 * 109.46997 * 179.97438 * 7 5 3 35 35 H 1.08999 * 109.47385 * 269.99817 * 9 8 5 36 36 H 1.09009 * 109.47528 * 30.00131 * 9 8 5 37 37 H 1.09001 * 109.47405 * 149.99618 * 9 8 5 38 38 H 1.08001 * 120.00357 * 353.04495 * 12 10 8 39 39 H 1.08000 * 120.00224 * 166.78637 * 13 12 10 40 40 H 1.07998 * 120.05429 * 359.95718 * 15 14 13 41 41 H 1.08001 * 119.94617 * 179.97438 * 16 15 14 42 42 H 0.97007 * 119.99488 * 179.97438 * 22 21 19 43 43 H 1.08001 * 119.94331 * 180.24892 * 27 17 16 44 44 H 1.07997 * 120.04853 * 179.76909 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2092 0.0005 5 6 3.5663 1.2747 -0.0006 6 1 3.9564 0.7805 0.8892 7 6 4.1129 0.5814 -1.2502 8 7 3.9818 2.6796 0.0002 9 6 3.5807 3.5626 -1.0978 10 6 4.7329 3.1597 1.0110 11 8 5.0664 2.4259 1.9231 12 6 5.1471 4.5623 1.0120 13 6 5.7780 5.0792 2.0881 14 6 5.7937 4.3378 3.3569 15 6 6.9809 4.2277 4.0912 16 6 6.9907 3.5331 5.2790 17 6 5.8243 2.9361 5.7481 18 8 5.8399 2.2483 6.9163 19 6 6.9720 2.3061 7.6454 20 1 7.7762 2.9604 7.3429 21 6 7.1041 1.5251 8.7842 22 7 6.1246 0.7288 9.1527 23 14 8.6736 1.6047 9.7942 24 1 8.8768 2.9915 10.2847 25 1 8.5641 0.6816 10.9524 26 1 9.8270 1.2046 8.9489 27 6 4.6408 3.0474 5.0242 28 6 4.6215 3.7400 3.8355 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 3.8038 -0.4638 -1.2502 33 1 3.7228 1.0757 -2.1399 34 1 5.2013 0.6387 -1.2508 35 1 4.3345 3.5296 -1.8845 36 1 2.6225 3.2318 -1.4986 37 1 3.4866 4.5834 -0.7274 38 1 4.9485 5.1847 0.1519 39 1 6.2711 6.0374 2.0164 40 1 7.8875 4.6870 3.7258 41 1 7.9060 3.4472 5.8458 42 1 6.2173 0.1824 9.9489 43 1 3.7371 2.5859 5.3942 44 1 3.7035 3.8227 3.2726 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492021293.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:18 Heat of formation + Delta-G solvation = -79.357135 kcal Electronic energy + Delta-G solvation = -28374.988546 eV Core-core repulsion = 24260.112356 eV Total energy + Delta-G solvation = -4114.876190 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.00642 -39.74157 -38.76773 -37.07042 -36.44626 -35.50064 -33.24893 -32.27634 -31.68793 -30.11957 -28.10974 -27.89232 -27.02392 -25.49724 -24.79887 -23.14211 -21.79604 -21.25721 -20.17286 -18.62085 -17.94436 -17.86053 -17.23688 -17.12639 -16.77556 -16.47425 -15.60840 -15.13106 -14.60411 -14.53579 -14.22026 -14.09065 -13.67231 -13.63951 -13.52677 -13.41623 -13.13520 -12.91588 -12.65634 -12.57560 -12.49762 -12.35396 -12.20253 -12.11515 -11.76232 -11.67928 -11.33645 -11.01288 -10.98521 -10.69442 -10.62039 -10.58690 -10.38801 -9.55176 -9.44245 -9.15981 -8.80627 -8.69620 -7.96299 -6.88118 -6.45298 -4.01165 1.20724 1.97063 2.25549 2.43701 2.68059 3.03082 3.14084 3.16259 3.17958 3.57831 3.97672 4.40504 4.68056 4.69198 4.79214 4.86119 4.93514 4.95154 5.07576 5.13196 5.20647 5.25990 5.33156 5.34139 5.36104 5.49235 5.60472 5.64064 5.74352 5.78308 5.85703 6.11699 6.20914 6.27569 6.35664 6.46726 6.59128 6.78949 7.03218 7.12322 7.32825 7.38423 7.46330 7.50331 7.51627 7.92152 8.00942 8.38043 9.00149 9.72370 10.72491 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014728 B = 0.002805 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.681915 B = 9978.328601 C =11157.232061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.356 6.356 3 C 0.453 3.547 4 O -0.499 6.499 5 C 0.148 3.852 6 H 0.141 0.859 7 C -0.153 4.153 8 N -0.606 5.606 9 C 0.082 3.918 10 C 0.548 3.452 11 O -0.508 6.508 12 C -0.266 4.266 13 C 0.031 3.969 14 C -0.186 4.186 15 C -0.041 4.041 16 C -0.247 4.247 17 C 0.171 3.829 18 O -0.172 6.172 19 C -0.390 4.390 20 H 0.093 0.907 21 C 0.039 3.961 22 N -0.859 5.859 23 Si 0.942 3.058 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.269 1.269 27 C -0.200 4.200 28 C 0.002 3.998 29 H 0.061 0.939 30 H 0.102 0.898 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.107 0.893 41 H 0.126 0.874 42 H 0.271 0.729 43 H 0.113 0.887 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.669 3.172 -22.201 23.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.272 6.272 3 C 0.294 3.706 4 O -0.386 6.386 5 C 0.042 3.958 6 H 0.159 0.841 7 C -0.211 4.211 8 N -0.342 5.342 9 C -0.060 4.060 10 C 0.340 3.660 11 O -0.383 6.383 12 C -0.287 4.287 13 C 0.012 3.988 14 C -0.187 4.187 15 C -0.060 4.060 16 C -0.266 4.266 17 C 0.116 3.884 18 O -0.075 6.075 19 C -0.466 4.466 20 H 0.110 0.890 21 C -0.165 4.165 22 N -0.494 5.494 23 Si 0.766 3.234 24 H -0.194 1.194 25 H -0.203 1.203 26 H -0.194 1.194 27 C -0.220 4.220 28 C -0.016 4.016 29 H 0.080 0.920 30 H 0.120 0.880 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.125 0.875 41 H 0.144 0.856 42 H 0.081 0.919 43 H 0.131 0.869 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.946 2.748 -21.368 22.349 hybrid contribution 0.425 0.120 0.256 0.511 sum -5.521 2.868 -21.111 22.009 Atomic orbital electron populations 1.23277 0.76224 1.03784 1.02542 1.86514 1.23501 1.33241 1.83951 1.24342 0.92420 0.81600 0.72233 1.90647 1.66959 1.36248 1.44729 1.20453 0.86323 0.85080 1.03948 0.84133 1.22059 1.02683 1.01025 0.95320 1.47590 1.53000 1.08859 1.24704 1.21795 1.00221 0.94864 0.89166 1.18593 0.77519 0.89297 0.80544 1.90992 1.54165 1.59416 1.33772 1.22615 1.10613 0.94288 1.01146 1.22381 0.88946 0.96417 0.91090 1.18302 0.94945 1.08976 0.96497 1.20741 0.95806 0.96309 0.93126 1.20967 0.98871 1.07319 0.99426 1.19539 0.93086 0.89800 0.86010 1.83930 1.37961 1.59685 1.25890 1.21334 0.94240 1.25509 1.05543 0.88992 1.25328 0.99062 0.95171 0.96976 1.70015 1.31343 1.23624 1.24378 0.85773 0.80106 0.78627 0.78895 1.19439 1.20254 1.19436 1.20009 0.96603 1.07619 0.97728 1.20457 0.96006 0.92295 0.92873 0.92012 0.87967 0.91747 0.90018 0.91947 0.90352 0.92917 0.90910 0.90498 0.85652 0.85864 0.87532 0.85617 0.91886 0.86855 0.88172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.56 101.05 1.07 1.36 16 2 O -0.36 -3.92 10.47 -39.25 -0.41 -4.34 16 3 C 0.45 5.63 6.99 36.01 0.25 5.89 16 4 O -0.50 -7.20 14.25 -18.75 -0.27 -7.46 16 5 C 0.15 1.75 3.16 -69.08 -0.22 1.53 16 6 H 0.14 1.93 6.89 -51.93 -0.36 1.57 16 7 C -0.15 -1.27 9.13 37.16 0.34 -0.93 16 8 N -0.61 -7.55 2.54 -176.96 -0.45 -8.00 16 9 C 0.08 0.76 8.71 59.84 0.52 1.28 16 10 C 0.55 8.42 6.68 -13.04 -0.09 8.34 16 11 O -0.51 -9.91 11.81 5.17 0.06 -9.85 16 12 C -0.27 -3.47 9.00 -37.50 -0.34 -3.81 16 13 C 0.03 0.44 9.79 -37.19 -0.36 0.08 16 14 C -0.19 -3.48 4.43 -105.03 -0.47 -3.94 16 15 C -0.04 -0.81 9.78 -39.15 -0.38 -1.19 16 16 C -0.25 -5.64 9.10 -39.47 -0.36 -6.00 16 17 C 0.17 4.37 6.65 -38.88 -0.26 4.11 16 18 O -0.17 -5.10 9.74 0.74 0.01 -5.09 16 19 C -0.39 -11.14 9.41 30.91 0.29 -10.85 16 20 H 0.09 2.42 5.33 -52.49 -0.28 2.14 16 21 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 22 N -0.86 -25.56 13.67 55.48 0.76 -24.80 16 23 Si 0.94 20.73 29.55 -169.99 -5.02 15.71 16 24 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 25 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 26 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 27 C -0.20 -4.67 9.97 -39.47 -0.39 -5.06 16 28 C 0.00 0.05 6.75 -39.15 -0.26 -0.22 16 29 H 0.06 0.46 8.13 -51.93 -0.42 0.03 16 30 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 32 H 0.08 0.59 8.11 -51.93 -0.42 0.17 16 33 H 0.06 0.44 7.67 -51.93 -0.40 0.05 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.69 6.28 -51.92 -0.33 0.36 16 37 H 0.08 0.66 6.19 -51.93 -0.32 0.33 16 38 H 0.13 1.20 6.34 -52.49 -0.33 0.87 16 39 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 41 H 0.13 2.84 5.74 -52.49 -0.30 2.54 16 42 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.11 2.59 8.06 -52.49 -0.42 2.17 16 44 H 0.10 1.93 7.24 -52.49 -0.38 1.55 16 LS Contribution 371.92 15.07 5.60 5.60 Total: -1.00 -35.26 371.92 -6.11 -41.37 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -5.63 Total: 5.29 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -0.76 Total: -8.43 kcal Atomic # 7 Polarization: -33.11 SS G_CDS: 0.31 Total: -32.80 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.61 Total: -26.73 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.26 -6.11 -41.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492021293.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.990 kcal (2) G-P(sol) polarization free energy of solvation -35.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds