Wall clock time and date at job start Tue Mar 31 2020 18:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34225 * 117.00248 * 2 1 4 4 O 1.20822 * 119.99711 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99815 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.47393 * 299.99420 * 5 3 2 7 7 C 1.52998 * 109.47267 * 60.00044 * 5 3 2 8 8 N 1.46508 * 109.47005 * 180.02562 * 5 3 2 9 9 C 1.46494 * 119.99723 * 300.00013 * 8 5 3 10 10 C 1.34776 * 119.99844 * 119.99569 * 8 5 3 11 11 O 1.21718 * 120.00237 * 0.02562 * 10 8 5 12 12 C 1.46256 * 119.99452 * 180.02562 * 10 8 5 13 13 C 1.35023 * 119.99725 * 173.05080 * 12 10 8 14 14 C 1.46965 * 119.99862 * 346.78822 * 13 12 10 15 15 C 1.40027 * 120.09767 * 135.37045 * 14 13 12 16 16 C 1.37597 * 119.89473 * 179.97438 * 15 14 13 17 17 C 1.39175 * 120.10303 * 0.24887 * 16 15 14 18 18 O 1.35569 * 119.89837 * 179.74408 * 17 16 15 19 19 C 1.34784 * 117.00161 * 7.21370 * 18 17 16 20 20 H 1.07994 * 119.99689 * 6.20467 * 19 18 17 21 21 C 1.38718 * 119.99753 * 186.20471 * 19 18 17 22 22 N 1.31504 * 120.00081 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99504 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47177 * 60.00094 * 23 21 19 25 25 H 1.48505 * 109.46834 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.46890 * 300.00118 * 23 21 19 27 27 C 1.39182 * 120.19900 * 359.49901 * 17 16 15 28 28 C 1.37593 * 120.10230 * 0.50237 * 27 17 16 29 29 H 1.09001 * 109.47163 * 60.00055 * 1 2 3 30 30 H 1.09000 * 109.47519 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47334 * 299.99740 * 1 2 3 32 32 H 1.08992 * 109.46967 * 299.99878 * 7 5 3 33 33 H 1.09000 * 109.47125 * 60.00116 * 7 5 3 34 34 H 1.09001 * 109.46997 * 179.97438 * 7 5 3 35 35 H 1.08999 * 109.47385 * 269.99817 * 9 8 5 36 36 H 1.09009 * 109.47528 * 30.00131 * 9 8 5 37 37 H 1.09001 * 109.47405 * 149.99618 * 9 8 5 38 38 H 1.08001 * 120.00357 * 353.04495 * 12 10 8 39 39 H 1.08000 * 120.00224 * 166.78637 * 13 12 10 40 40 H 1.07998 * 120.05429 * 359.95718 * 15 14 13 41 41 H 1.08001 * 119.94617 * 179.97438 * 16 15 14 42 42 H 0.97007 * 119.99488 * 179.97438 * 22 21 19 43 43 H 1.08001 * 119.94331 * 180.24892 * 27 17 16 44 44 H 1.07997 * 120.04853 * 179.76909 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2092 0.0005 5 6 3.5663 1.2747 -0.0006 6 1 3.9564 0.7805 0.8892 7 6 4.1129 0.5814 -1.2502 8 7 3.9818 2.6796 0.0002 9 6 3.5807 3.5626 -1.0978 10 6 4.7329 3.1597 1.0110 11 8 5.0664 2.4259 1.9231 12 6 5.1471 4.5623 1.0120 13 6 5.7780 5.0792 2.0881 14 6 5.7937 4.3378 3.3569 15 6 6.9809 4.2277 4.0912 16 6 6.9907 3.5331 5.2790 17 6 5.8243 2.9361 5.7481 18 8 5.8399 2.2483 6.9163 19 6 6.9720 2.3061 7.6454 20 1 7.7762 2.9604 7.3429 21 6 7.1041 1.5251 8.7842 22 7 6.1246 0.7288 9.1527 23 14 8.6736 1.6047 9.7942 24 1 8.8768 2.9915 10.2847 25 1 8.5641 0.6816 10.9524 26 1 9.8270 1.2046 8.9489 27 6 4.6408 3.0474 5.0242 28 6 4.6215 3.7400 3.8355 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 3.8038 -0.4638 -1.2502 33 1 3.7228 1.0757 -2.1399 34 1 5.2013 0.6387 -1.2508 35 1 4.3345 3.5296 -1.8845 36 1 2.6225 3.2318 -1.4986 37 1 3.4866 4.5834 -0.7274 38 1 4.9485 5.1847 0.1519 39 1 6.2711 6.0374 2.0164 40 1 7.8875 4.6870 3.7258 41 1 7.9060 3.4472 5.8458 42 1 6.2173 0.1824 9.9489 43 1 3.7371 2.5859 5.3942 44 1 3.7035 3.8227 3.2726 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492021293.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:17 Heat of formation + Delta-G solvation = -102.142903 kcal Electronic energy + Delta-G solvation = -28375.976611 eV Core-core repulsion = 24260.112356 eV Total energy + Delta-G solvation = -4115.864255 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.00427 -41.03586 -40.42852 -38.44605 -37.72022 -36.65066 -34.68901 -34.06526 -32.74679 -31.84625 -29.59049 -28.69814 -27.85922 -27.43751 -25.83027 -24.37533 -23.51324 -22.66157 -21.32180 -20.00273 -19.57200 -19.05701 -18.61729 -18.25852 -18.03365 -17.45512 -16.78200 -16.40484 -16.38072 -16.00230 -15.62621 -15.54477 -15.17466 -14.86716 -14.64331 -14.47312 -14.41276 -14.29817 -14.00684 -13.77767 -13.56113 -13.41043 -13.28925 -13.20920 -12.98408 -12.92774 -12.66214 -12.55615 -12.35182 -12.21968 -12.11287 -11.86538 -11.58558 -11.29602 -10.93792 -10.70846 -10.39558 -9.87462 -9.58898 -8.59881 -8.48875 -6.16117 -0.05573 0.68039 0.98180 1.04385 1.33939 1.41167 1.47901 1.51244 2.09487 2.17492 2.42771 2.85900 3.20383 3.48282 3.51945 3.78427 3.90271 3.98364 4.06834 4.12708 4.14530 4.23335 4.26454 4.27893 4.52859 4.55725 4.63236 4.67517 4.70606 4.74301 4.77220 4.92176 5.02394 5.08082 5.11009 5.20145 5.23638 5.24555 5.35274 5.46044 5.65025 5.70955 5.80310 6.01111 6.22136 6.35335 6.55594 6.95078 7.22541 7.76994 8.74568 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014728 B = 0.002805 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.681915 B = 9978.328601 C =11157.232061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.361 6.361 3 C 0.455 3.545 4 O -0.522 6.522 5 C 0.141 3.859 6 H 0.114 0.886 7 C -0.142 4.142 8 N -0.601 5.601 9 C 0.075 3.925 10 C 0.533 3.467 11 O -0.562 6.562 12 C -0.234 4.234 13 C 0.013 3.987 14 C -0.156 4.156 15 C -0.045 4.045 16 C -0.253 4.253 17 C 0.128 3.872 18 O -0.231 6.231 19 C -0.416 4.416 20 H 0.103 0.897 21 C -0.024 4.024 22 N -0.921 5.921 23 Si 1.022 2.978 24 H -0.255 1.255 25 H -0.271 1.271 26 H -0.256 1.256 27 C -0.219 4.219 28 C 0.002 3.998 29 H 0.071 0.929 30 H 0.132 0.868 31 H 0.053 0.947 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.175 0.825 39 H 0.175 0.825 40 H 0.152 0.848 41 H 0.122 0.878 42 H 0.274 0.726 43 H 0.098 0.902 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.420 5.567 -26.354 27.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.276 6.276 3 C 0.297 3.703 4 O -0.411 6.411 5 C 0.035 3.965 6 H 0.132 0.868 7 C -0.200 4.200 8 N -0.335 5.335 9 C -0.066 4.066 10 C 0.326 3.674 11 O -0.442 6.442 12 C -0.254 4.254 13 C -0.006 4.006 14 C -0.157 4.157 15 C -0.063 4.063 16 C -0.272 4.272 17 C 0.077 3.923 18 O -0.137 6.137 19 C -0.492 4.492 20 H 0.121 0.879 21 C -0.221 4.221 22 N -0.559 5.559 23 Si 0.840 3.160 24 H -0.179 1.179 25 H -0.195 1.195 26 H -0.180 1.180 27 C -0.239 4.239 28 C -0.016 4.016 29 H 0.090 0.910 30 H 0.150 0.850 31 H 0.071 0.929 32 H 0.109 0.891 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.193 0.807 39 H 0.192 0.808 40 H 0.169 0.831 41 H 0.140 0.860 42 H 0.083 0.917 43 H 0.117 0.883 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.731 5.175 -25.629 26.571 hybrid contribution -0.210 -0.519 1.001 1.147 sum -4.941 4.656 -24.629 25.547 Atomic orbital electron populations 1.23564 0.74562 1.05817 1.02498 1.86505 1.25154 1.32490 1.83467 1.24433 0.92621 0.81658 0.71584 1.90629 1.67511 1.36934 1.46040 1.20568 0.86130 0.85191 1.04587 0.86844 1.22017 1.02593 1.01378 0.94026 1.47695 1.51626 1.09476 1.24668 1.22070 1.01119 0.94633 0.88760 1.19222 0.77568 0.90248 0.80378 1.90995 1.56483 1.60848 1.35868 1.23083 1.06868 0.93103 1.02390 1.22654 0.90824 0.98243 0.88920 1.18869 0.93437 1.05693 0.97689 1.21196 0.97884 0.95420 0.91756 1.21122 0.97707 1.07512 1.00863 1.19984 0.94898 0.91196 0.86218 1.83893 1.39090 1.62671 1.28095 1.21848 0.94483 1.26404 1.06429 0.87930 1.26695 1.03103 0.94371 0.97965 1.70176 1.34302 1.25771 1.25658 0.84612 0.75053 0.79338 0.76955 1.17887 1.19531 1.18040 1.20157 0.95783 1.08847 0.99073 1.20613 0.97554 0.91859 0.91576 0.90986 0.84996 0.92861 0.89055 0.90086 0.90190 0.89830 0.91163 0.89225 0.80749 0.80824 0.83074 0.86001 0.91746 0.88344 0.87122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 113.37 1.20 1.63 16 2 O -0.36 -7.67 10.47 -51.37 -0.54 -8.21 16 3 C 0.45 10.95 6.99 71.24 0.50 11.45 16 4 O -0.52 -14.52 14.25 21.98 0.31 -14.20 16 5 C 0.14 3.20 3.16 44.24 0.14 3.34 16 6 H 0.11 3.24 6.89 -2.39 -0.02 3.22 16 7 C -0.14 -2.06 9.13 71.98 0.66 -1.40 16 8 N -0.60 -13.42 2.54 -832.00 -2.11 -15.53 16 9 C 0.08 1.06 8.71 127.77 1.11 2.17 16 10 C 0.53 15.02 6.68 86.33 0.58 15.60 16 11 O -0.56 -21.75 11.81 -4.41 -0.05 -21.80 16 12 C -0.23 -4.89 9.00 23.62 0.21 -4.67 16 13 C 0.01 0.29 9.79 23.82 0.23 0.53 16 14 C -0.16 -5.47 4.43 -20.13 -0.09 -5.56 16 15 C -0.04 -1.66 9.78 22.55 0.22 -1.44 16 16 C -0.25 -11.89 9.10 22.34 0.20 -11.69 16 17 C 0.13 7.02 6.65 22.72 0.15 7.17 16 18 O -0.23 -14.90 9.74 -20.28 -0.20 -15.10 16 19 C -0.42 -25.34 9.41 67.93 0.64 -24.70 16 20 H 0.10 5.70 5.33 -2.91 -0.02 5.69 16 21 C -0.02 -1.41 5.49 84.86 0.47 -0.94 16 22 N -0.92 -58.65 13.67 21.62 0.30 -58.35 16 23 Si 1.02 44.05 29.55 68.60 2.03 46.07 16 24 H -0.25 -10.23 7.11 99.48 0.71 -9.52 16 25 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 26 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 27 C -0.22 -10.93 9.97 22.34 0.22 -10.71 16 28 C 0.00 0.10 6.75 22.55 0.15 0.25 16 29 H 0.07 0.95 8.13 -2.39 -0.02 0.94 16 30 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.05 0.93 8.13 -2.39 -0.02 0.91 16 32 H 0.09 1.16 8.11 -2.39 -0.02 1.14 16 33 H 0.08 0.88 7.67 -2.39 -0.02 0.86 16 34 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.07 1.08 6.28 -2.38 -0.01 1.07 16 37 H 0.09 1.04 6.19 -2.39 -0.01 1.02 16 38 H 0.18 2.01 6.34 -2.91 -0.02 1.99 16 39 H 0.17 2.45 8.06 -2.91 -0.02 2.42 16 40 H 0.15 4.24 8.06 -2.91 -0.02 4.22 16 41 H 0.12 5.70 5.74 -2.91 -0.02 5.68 16 42 H 0.27 15.90 8.31 -92.70 -0.77 15.13 16 43 H 0.10 5.00 8.06 -2.91 -0.02 4.97 16 44 H 0.11 4.24 7.24 -2.91 -0.02 4.22 16 Total: -1.00 -86.60 371.92 7.36 -79.24 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: 1.03 Total: 26.86 kcal Atomic # 6 Polarization: -25.57 SS G_CDS: 6.59 Total: -18.98 kcal Atomic # 7 Polarization: -72.07 SS G_CDS: -1.81 Total: -73.88 kcal Atomic # 8 Polarization: -58.84 SS G_CDS: -0.47 Total: -59.31 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -86.60 7.36 -79.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492021293.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.904 kcal (2) G-P(sol) polarization free energy of solvation -86.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds