Wall clock time and date at job start Tue Mar 31 2020 17:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.47075 * 2 1 4 4 O 1.20760 * 120.00077 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99876 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.47002 * 180.02562 * 5 3 2 7 7 C 1.34778 * 119.99794 * 179.97438 * 6 5 3 8 8 O 1.21722 * 120.00106 * 0.02562 * 7 6 5 9 9 C 1.46259 * 119.99916 * 179.97438 * 7 6 5 10 10 C 1.35024 * 119.99993 * 173.21589 * 9 7 6 11 11 C 1.46973 * 119.99959 * 348.68215 * 10 9 7 12 12 C 1.40031 * 120.07648 * 136.64010 * 11 10 9 13 13 C 1.37646 * 119.99597 * 180.02562 * 12 11 10 14 14 C 1.39047 * 120.16562 * 359.97438 * 13 12 11 15 15 O 1.35613 * 119.92444 * 180.02562 * 14 13 12 16 16 C 1.34759 * 116.99719 * 354.29886 * 15 14 13 17 17 H 1.08005 * 120.00162 * 5.06470 * 16 15 14 18 18 C 1.38708 * 120.00261 * 185.06097 * 16 15 14 19 19 N 1.31526 * 119.99951 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00457 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47326 * 59.99937 * 20 18 16 22 22 H 1.48501 * 109.47454 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46761 * 300.00188 * 20 18 16 24 24 C 1.39623 * 120.16020 * 0.02562 * 14 13 12 25 25 O 1.35953 * 120.00244 * 179.97438 * 24 14 13 26 26 C 1.42899 * 116.99804 * 180.02562 * 25 24 14 27 27 C 1.38084 * 119.99122 * 359.72594 * 24 14 13 28 28 H 1.09000 * 109.46935 * 60.00115 * 1 2 3 29 29 H 1.09004 * 109.47276 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47638 * 300.00106 * 1 2 3 31 31 H 1.09004 * 109.47227 * 239.99962 * 2 1 3 32 32 H 1.09007 * 109.46869 * 120.00261 * 2 1 3 33 33 H 1.08991 * 109.47420 * 59.99929 * 5 3 2 34 34 H 1.09003 * 109.46849 * 300.00099 * 5 3 2 35 35 H 0.97001 * 120.00009 * 359.97438 * 6 5 3 36 36 H 1.08001 * 119.99815 * 353.22268 * 9 7 6 37 37 H 1.07997 * 120.00206 * 168.68250 * 10 9 7 38 38 H 1.07997 * 119.99840 * 359.97438 * 12 11 10 39 39 H 1.08009 * 119.91604 * 179.97438 * 13 12 11 40 40 H 0.96992 * 120.00225 * 179.97438 * 19 18 16 41 41 H 1.09008 * 109.47375 * 300.00194 * 26 25 24 42 42 H 1.09007 * 109.47341 * 59.99835 * 26 25 24 43 43 H 1.08998 * 109.47315 * 180.02562 * 26 25 24 44 44 H 1.08008 * 120.07546 * 180.27472 * 27 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2476 2.3387 -0.0005 5 6 3.5139 1.6961 -0.0006 6 7 3.7416 3.1433 0.0002 7 6 4.9994 3.6276 0.0003 8 8 5.9461 2.8625 -0.0006 9 6 5.2268 5.0724 0.0005 10 6 6.4788 5.5588 0.1388 11 6 7.5751 4.6640 0.5358 12 6 8.8158 4.7457 -0.1083 13 6 9.8412 3.9065 0.2644 14 6 9.6490 2.9768 1.2804 15 8 10.6628 2.1528 1.6440 16 6 11.7884 2.2046 0.9049 17 1 11.8842 2.9378 0.1176 18 6 12.8240 1.3165 1.1551 19 7 12.7077 0.4240 2.1142 20 14 14.3846 1.3888 0.1310 21 1 15.0140 2.7253 0.2816 22 1 15.3296 0.3411 0.5941 23 1 14.0505 1.1571 -1.2972 24 6 8.4147 2.8896 1.9271 25 8 8.2301 1.9790 2.9197 26 6 6.9419 1.9447 3.5371 27 6 7.3830 3.7317 1.5619 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.9647 1.2575 -0.8907 34 1 3.9654 1.2572 0.8892 35 1 2.9872 3.7530 0.0005 36 1 4.3932 5.7502 -0.1099 37 1 6.6746 6.6053 -0.0422 38 1 8.9678 5.4665 -0.8980 39 1 10.7975 3.9703 -0.2335 40 1 13.4317 -0.1973 2.2890 41 1 6.7281 2.9148 3.9861 42 1 6.1850 1.7171 2.7864 43 1 6.9298 1.1764 4.3102 44 1 6.4290 3.6684 2.0643 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492270907.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:42 Heat of formation + Delta-G solvation = -104.535455 kcal Electronic energy + Delta-G solvation = -28202.677864 eV Core-core repulsion = 24086.709860 eV Total energy + Delta-G solvation = -4115.968004 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.49610 -41.01450 -40.14432 -39.20843 -37.78377 -35.47346 -34.51973 -33.91092 -33.81253 -31.03146 -30.48741 -29.24702 -27.96451 -27.34872 -25.32551 -23.91904 -23.08893 -22.39479 -21.13550 -20.32306 -19.82594 -19.26334 -18.28201 -17.55903 -17.35807 -17.06332 -16.77641 -16.68338 -16.51416 -16.33659 -15.89706 -15.55051 -15.40225 -15.21853 -15.02323 -14.69103 -14.40250 -14.36263 -14.10956 -13.69752 -13.47820 -13.46097 -13.24858 -13.11786 -12.81392 -12.63369 -12.62024 -12.52522 -12.19207 -12.05088 -12.02389 -11.86436 -11.32642 -10.98709 -10.81468 -10.68160 -10.40861 -10.09327 -9.08406 -8.47601 -8.42570 -6.08108 -0.07857 0.71385 0.82453 1.08000 1.35137 1.48348 1.52459 2.16406 2.19769 2.41700 2.61948 2.87980 2.96752 3.18208 3.47976 3.89723 3.93348 4.03010 4.13169 4.20336 4.27123 4.29219 4.32841 4.33829 4.38241 4.48150 4.56562 4.61112 4.65158 4.75998 4.77454 5.00436 5.04039 5.04952 5.13160 5.21307 5.27627 5.30124 5.38667 5.55696 5.64449 5.79338 5.99368 6.10489 6.35652 6.58803 6.67431 6.99810 7.34868 7.84472 8.79849 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.015114 B = 0.002739 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.115904 B =10221.678693 C =11003.158311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.170 4.170 3 C 0.363 3.637 4 O -0.479 6.479 5 C 0.062 3.938 6 N -0.720 5.720 7 C 0.528 3.472 8 O -0.559 6.559 9 C -0.232 4.232 10 C 0.008 3.992 11 C -0.128 4.128 12 C -0.076 4.076 13 C -0.230 4.230 14 C 0.097 3.903 15 O -0.220 6.220 16 C -0.415 4.415 17 H 0.103 0.897 18 C -0.025 4.025 19 N -0.920 5.920 20 Si 1.022 2.978 21 H -0.254 1.254 22 H -0.271 1.271 23 H -0.258 1.258 24 C 0.026 3.974 25 O -0.346 6.346 26 C 0.030 3.970 27 C -0.074 4.074 28 H 0.050 0.950 29 H 0.079 0.921 30 H 0.049 0.951 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.414 0.586 36 H 0.170 0.830 37 H 0.172 0.828 38 H 0.151 0.849 39 H 0.128 0.872 40 H 0.272 0.728 41 H 0.060 0.940 42 H 0.052 0.948 43 H 0.111 0.889 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.179 6.052 -5.337 24.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.207 4.207 3 C 0.240 3.760 4 O -0.354 6.354 5 C -0.063 4.063 6 N -0.375 5.375 7 C 0.318 3.682 8 O -0.439 6.439 9 C -0.253 4.253 10 C -0.011 4.011 11 C -0.129 4.129 12 C -0.094 4.094 13 C -0.249 4.249 14 C 0.046 3.954 15 O -0.127 6.127 16 C -0.491 4.491 17 H 0.121 0.879 18 C -0.223 4.223 19 N -0.558 5.558 20 Si 0.840 3.160 21 H -0.178 1.178 22 H -0.196 1.196 23 H -0.182 1.182 24 C -0.019 4.019 25 O -0.262 6.262 26 C -0.065 4.065 27 C -0.093 4.093 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.069 0.931 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.252 0.748 36 H 0.187 0.813 37 H 0.189 0.811 38 H 0.169 0.831 39 H 0.146 0.854 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.129 0.871 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -22.697 5.506 -4.977 23.880 hybrid contribution 0.369 -0.214 -0.151 0.452 sum -22.328 5.292 -5.128 23.513 Atomic orbital electron populations 1.21604 0.93782 1.02801 1.02042 1.22085 0.98121 0.93465 1.07058 1.25030 0.89481 0.92621 0.68839 1.90379 1.58983 1.48692 1.37325 1.21802 0.95992 0.83205 1.05308 1.45738 1.08385 1.07481 1.75850 1.19043 0.82222 0.90700 0.76194 1.91038 1.41963 1.60808 1.50091 1.23042 0.99020 0.92949 1.10275 1.22590 0.90160 0.99514 0.88868 1.18693 0.94834 1.00135 0.99237 1.21110 0.91021 0.98167 0.99096 1.20923 1.01796 1.00484 1.01701 1.19490 0.87573 0.93073 0.95305 1.83962 1.21838 1.55150 1.51734 1.21887 0.91726 1.19300 1.16172 0.87940 1.26679 1.02861 0.94192 0.98535 1.70211 1.34604 1.19424 1.31538 0.84618 0.74626 0.79121 0.77608 1.17820 1.19596 1.18199 1.18330 0.92990 0.95806 0.94728 1.86144 1.35632 1.55464 1.48928 1.23122 0.82790 1.03156 0.97440 1.20774 0.95256 0.94578 0.98708 0.93129 0.90192 0.93146 0.86046 0.86078 0.87897 0.87982 0.74827 0.81287 0.81055 0.83139 0.85419 0.91892 0.92173 0.92973 0.87083 0.85313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.20 71.98 0.66 -0.81 16 2 C -0.17 -1.48 6.36 29.85 0.19 -1.29 16 3 C 0.36 5.21 7.23 29.10 0.21 5.42 16 4 O -0.48 -9.39 15.29 -1.45 -0.02 -9.41 16 5 C 0.06 1.06 6.09 85.63 0.52 1.58 16 6 N -0.72 -14.18 5.52 -471.24 -2.60 -16.79 16 7 C 0.53 13.63 6.77 86.33 0.58 14.21 16 8 O -0.56 -20.13 12.18 -4.42 -0.05 -20.19 16 9 C -0.23 -4.62 9.90 23.62 0.23 -4.38 16 10 C 0.01 0.18 9.80 23.82 0.23 0.41 16 11 C -0.13 -4.39 4.54 -20.14 -0.09 -4.48 16 12 C -0.08 -2.79 9.78 22.56 0.22 -2.57 16 13 C -0.23 -10.77 9.14 22.32 0.20 -10.57 16 14 C 0.10 5.34 6.67 22.80 0.15 5.50 16 15 O -0.22 -14.42 9.52 -6.53 -0.06 -14.48 16 16 C -0.41 -25.55 9.48 67.93 0.64 -24.91 16 17 H 0.10 5.73 5.18 -2.91 -0.02 5.71 16 18 C -0.03 -1.51 5.49 84.85 0.47 -1.04 16 19 N -0.92 -59.32 13.67 21.62 0.30 -59.02 16 20 Si 1.02 44.52 29.55 68.60 2.03 46.55 16 21 H -0.25 -10.27 7.11 99.48 0.71 -9.57 16 22 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 23 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 24 C 0.03 1.28 6.70 22.57 0.15 1.43 16 25 O -0.35 -17.08 10.28 -79.04 -0.81 -17.89 16 26 C 0.03 0.98 9.81 113.37 1.11 2.10 16 27 C -0.07 -2.90 5.58 22.65 0.13 -2.78 16 28 H 0.05 0.61 8.10 -2.39 -0.02 0.59 16 29 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 30 H 0.05 0.61 8.10 -2.39 -0.02 0.59 16 31 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.12 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.41 6.77 7.42 -92.71 -0.69 6.08 16 36 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 37 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 38 H 0.15 4.22 8.06 -2.91 -0.02 4.20 16 39 H 0.13 5.93 5.62 -2.91 -0.02 5.91 16 40 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 41 H 0.06 1.73 7.65 -2.38 -0.02 1.71 16 42 H 0.05 1.61 7.67 -2.38 -0.02 1.60 16 43 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 44 H 0.13 4.42 5.25 -2.91 -0.02 4.41 16 Total: -1.00 -89.38 376.21 4.75 -84.63 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: 0.35 Total: 28.76 kcal Atomic # 6 Polarization: -27.78 SS G_CDS: 5.62 Total: -22.16 kcal Atomic # 7 Polarization: -73.50 SS G_CDS: -2.31 Total: -75.81 kcal Atomic # 8 Polarization: -61.02 SS G_CDS: -0.95 Total: -61.97 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -89.38 4.75 -84.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492270907.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.903 kcal (2) G-P(sol) polarization free energy of solvation -89.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds